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Effects of Probiotics on the Human Metabolome

A special issue of Nutrients (ISSN 2072-6643). This special issue belongs to the section "Prebiotics and Probiotics".

Deadline for manuscript submissions: closed (20 June 2023) | Viewed by 24670

Special Issue Editors


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Guest Editor
Internal Medicine, Sapienza University of Rome, 5, 00185 Roma, Italy
Interests: gut microbiota; pathophysiology; functional gastrointestinal disorders; antibiotics; probiotics
Special Issues, Collections and Topics in MDPI journals

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Guest Editor
1. Research and Training Center in Human Nutrition, Catholic University of Sacred Heart, 00168 Rome, Italy
2. Clinical Nutrition Unit, Fondazione Policlinico Universitario A. Gemelli, IRCCS, 00168 Rome, Italy
Interests: clinical nutrition; perioperative nutrition; body composition; gut microbiota dietary modulation; digestive cancer
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

In the last 40 years, gut microbiota composition, primarily, and therefore functioning are subjects upon which the energies and attention of scientists from different specializations have been focused. Metabolites produced from human gut microbiota strictly interact and meld with those of the host. This metabolic “jam session” has been implicated in the pathogenesis of metabolic and nonmetabolic conditions affecting the human host. Eminent examples include obesity, microinflammation, diabetes, cardiovascular disorders, nonalcoholic liver disease, liver cirrhosis and cancers.

We aim to involve authors via their contributions in the field of gut microbiota composition and the concept, physiology, pathophysiology and clinical manifestations of the human metabolome.

Newer data on gut microbiota composition and functions, the concept of human gut metabolome, and their interactions in health and disease will enrich the research panorama, giving vital fuel to researchers from medical, biomedical and bio-engineering fields of interest. We are soliciting original contributions in addition to narratives and/or systematic reviews and metanalyses of the literature.

Dr. Emidio Scarpellini
Dr. Emanuele Rinninella
Guest Editors

Manuscript Submission Information

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Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2900 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • gut microbiota
  • metabolism
  • metabolomics
  • metabolism dysfunction
  • obesity

Published Papers (9 papers)

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Editorial

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2 pages, 201 KiB  
Editorial
Gut Microbiota According to the Metabolome
by Emidio Scarpellini and Emanuele Rinninella
Nutrients 2023, 15(22), 4768; https://doi.org/10.3390/nu15224768 - 13 Nov 2023
Viewed by 856
Abstract
The human gut microbiota is an ecosystem harboring trillions of microorganisms, encompassing bacteria, viruses, archaea, fungi, and protozoa [...] Full article
(This article belongs to the Special Issue Effects of Probiotics on the Human Metabolome)

Research

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13 pages, 1121 KiB  
Article
Body Fat Reduction Effect of Bifidobacterium breve B-3: A Randomized, Double-Blind, Placebo Comparative Clinical Trial
by Hyun Kyung Sung, Sang Jun Youn, Yong Choi, Sang Won Eun and Seon Mi Shin
Nutrients 2023, 15(1), 28; https://doi.org/10.3390/nu15010028 - 21 Dec 2022
Cited by 6 | Viewed by 4729
Abstract
This double-blind, randomized clinical trial aimed to evaluate the efficacy and safety of Bifidobacterium breve B-3 (BB-3) for reducing body fat. Healthy individuals were randomized into the BB-3 or placebo group (1:1). Dual-energy X-ray absorptiometry was used to evaluate body fat reduction objectively. [...] Read more.
This double-blind, randomized clinical trial aimed to evaluate the efficacy and safety of Bifidobacterium breve B-3 (BB-3) for reducing body fat. Healthy individuals were randomized into the BB-3 or placebo group (1:1). Dual-energy X-ray absorptiometry was used to evaluate body fat reduction objectively. In the BB-3 group, body weight was lower than before BB-3 ingestion. Regarding waist circumference, hip circumference, and waist/hip circumference ratio, waist circumference and hip circumference were lower in the BB-3 group than in the placebo group at 12 weeks; the waist/hip circumference ratio was found to decrease at each visit in the BB-3 group, although there was no significant difference in the amount of change after 12 weeks. BB-3 did not cause any severe adverse reactions. Body fat was significantly lower in the BB-3 group than in the placebo group. In conclusion, ingesting BB-3 significantly reduces body weight, waist circumference, and hip circumference. Thus, BB-3 is safe and effective for reducing body fat. Full article
(This article belongs to the Special Issue Effects of Probiotics on the Human Metabolome)
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16 pages, 2498 KiB  
Article
Clostridium butyricum Potentially Improves Immunity and Nutrition through Alteration of the Microbiota and Metabolism of Elderly People with Malnutrition in Long-Term Care
by Lin Liu, Xiang Chen, Lu Liu and Huanlong Qin
Nutrients 2022, 14(17), 3546; https://doi.org/10.3390/nu14173546 - 28 Aug 2022
Cited by 8 | Viewed by 3347
Abstract
Recent research advances examining the gut microbiome and its association with human health have indicated that microbiota-targeted intervention is a promising means for health modulation. In this study, elderly people in long-term care (aged 83.2 ± 5.3 year) with malnutrition (MNA-SF score ≤ [...] Read more.
Recent research advances examining the gut microbiome and its association with human health have indicated that microbiota-targeted intervention is a promising means for health modulation. In this study, elderly people in long-term care (aged 83.2 ± 5.3 year) with malnutrition (MNA-SF score ≤ 7) were recruited in a community hospital for a 12-week randomized, single-blind clinical trial with Clostridium butyricum. Compared with the basal fluctuations of the control group, an altered gut microbiome was observed in the intervention group, with increased (p < 0.05) Coprobacillus species, Carnobacterium divergens, and Corynebacterium_massiliense, and the promoted growth of the beneficial organisms Akketmanse muciniphila and Alistipes putredinis. A concentrated profile of 14 increased Kyoto Encyclopedia of Genes and Genomes (KEGG) orthologs (KOs) that were enriched in cofactor/vitamin production and carbohydrate metabolism pathways were discovered; the genes were found to be correlated (p < 0.05) with an elevated abundance of plasma metabolites and short-chain fatty acids (SCFAs), unsaturated medium- to long-chain fatty acids (MFA, LFA), carnitines, and amino acids, thus suggesting a coordinated ameliorated metabolism. Proinflammatory factor interferon-gamma (IFN-γ) levels decreased (p < 0.05) throughout the intervention, while the gut barrier tight junction protein, occludin, rose in abundance (p = 0.059), and the sensitive nutrition biomarker prealbumin improved, in contrast to the opposite changes in control. Based on our results obtained during a relatively short intervention time, C. butyricum might have great potential for improving nutrition and immunity in elderly people in long-term care with malnutrition through the alteration of gut microbiota, increasing the abundance of beneficial bacteria and activating the metabolism in SCFA and cofactor/vitamin production, bile acid metabolism, along with efficient energy generation. Full article
(This article belongs to the Special Issue Effects of Probiotics on the Human Metabolome)
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Review

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14 pages, 754 KiB  
Review
Gut Microbiota and Critically Ill Patients: Immunity and Its Modulation via Probiotics and Immunonutrition
by Ludovico Abenavoli, Emidio Scarpellini, Maria Rosaria Paravati, Giuseppe Guido Maria Scarlata, Luigi Boccuto, Bruno Tilocca, Paola Roncada and Francesco Luzza
Nutrients 2023, 15(16), 3569; https://doi.org/10.3390/nu15163569 - 13 Aug 2023
Cited by 1 | Viewed by 1758
Abstract
Critically ill patients have a hyper-inflammatory response against various offending injuries that can result in tissue damage, organ failure, and fatal prognosis. The origin of this detrimental, uncontrolled inflammatory cascade can be found also within our gut. In detail, one of the main [...] Read more.
Critically ill patients have a hyper-inflammatory response against various offending injuries that can result in tissue damage, organ failure, and fatal prognosis. The origin of this detrimental, uncontrolled inflammatory cascade can be found also within our gut. In detail, one of the main actors is our gut microbiota with its imbalance, namely gut dysbiosis: learning about the microbiota’s dysfunction and pathophysiology in the frame of critical patients is of crucial and emerging importance in the management of the systemic inflammatory response syndrome (SIRS) and the multiple organ dysfunction syndrome (MODS). Multiple pieces of evidence indicate that the bacteria that populate our gut efficiently modulate the immune response. Treatment and pretreatment with probiotics have shown promising preliminary results to attenuate systemic inflammation, especially in postoperative infections and ventilation performance. Finally, it is emerging how immunonutrition may exert a possible impact on the health status of patients in intensive care. Thus, this manuscript reviews evidence from the literature on gut microbiota composition, its derangement in critically ill patients, its pathophysiological role, and the described and emerging opportunities arising from its modulation. Full article
(This article belongs to the Special Issue Effects of Probiotics on the Human Metabolome)
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25 pages, 842 KiB  
Review
Role of Akkermansia in Human Diseases: From Causation to Therapeutic Properties
by Antonio Pellegrino, Gaetano Coppola, Francesco Santopaolo, Antonio Gasbarrini and Francesca Romana Ponziani
Nutrients 2023, 15(8), 1815; https://doi.org/10.3390/nu15081815 - 08 Apr 2023
Cited by 10 | Viewed by 4202
Abstract
The gut microbiota plays a critical role in the modulation of host metabolism and immune response, and its impairment has been implicated in many gastrointestinal and extraintestinal diseases. Current evidence shows the well-documented role of A. muciniphila in maintaining the integrity of the [...] Read more.
The gut microbiota plays a critical role in the modulation of host metabolism and immune response, and its impairment has been implicated in many gastrointestinal and extraintestinal diseases. Current evidence shows the well-documented role of A. muciniphila in maintaining the integrity of the intestinal barrier, modulating the host immune response, and improving several metabolic pathways, making it a key element in the pathogenesis of several human diseases. In this scenario, A. muciniphila is the most promising next-generation probiotic and one of the first microbial species suitable for specific clinical use when compared with traditional probiotics. Further studies are needed to provide more accurate insight into its mechanisms of action and to better elucidate its properties in several major areas, paving the way for a more integrated and personalized therapeutic approach that finally makes the most of our knowledge of the gut microbiota. Full article
(This article belongs to the Special Issue Effects of Probiotics on the Human Metabolome)
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10 pages, 610 KiB  
Review
Gut Microbiota in Non-Alcoholic Fatty Liver Disease Patients with Inflammatory Bowel Diseases: A Complex Interplay
by Ludovico Abenavoli, Lidia Giubilei, Anna Caterina Procopio, Rocco Spagnuolo, Francesco Luzza, Luigi Boccuto and Emidio Scarpellini
Nutrients 2022, 14(24), 5323; https://doi.org/10.3390/nu14245323 - 15 Dec 2022
Cited by 10 | Viewed by 2331
Abstract
The intestinal microbiota represents the microbial community that colonizes the gastrointestinal tract and constitutes the most complex ecosystem present in nature. The main intestinal microbial phyla are Firmicutes, Bacteroidetes, Actinobacteria, Proteobacteria, Fusobacteria, and Verrucromicrobia, with a clear [...] Read more.
The intestinal microbiota represents the microbial community that colonizes the gastrointestinal tract and constitutes the most complex ecosystem present in nature. The main intestinal microbial phyla are Firmicutes, Bacteroidetes, Actinobacteria, Proteobacteria, Fusobacteria, and Verrucromicrobia, with a clear predominance of the two phyla Firmicutes and Bacteroidetes which account for about 90% of the intestinal phyla. Intestinal microbiota alteration, or dysbiosis, has been proven to be involved in the development of various syndromes, such as non-alcoholic fatty liver disease, Crohn’s disease, and ulcerative colitis. The present review underlines the most recurrent changes in the intestinal microbiota of patients with NAFLD, Crohn’s disease, and ulcerative colitis. Full article
(This article belongs to the Special Issue Effects of Probiotics on the Human Metabolome)
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Other

12 pages, 456 KiB  
Systematic Review
Effect of Probiotic Supplementation on Gut Microbiota in Patients with Major Depressive Disorders: A Systematic Review
by Qin Xiang Ng, Yu Liang Lim, Clyve Yu Leon Yaow, Wee Khoon Ng, Julian Thumboo and Tau Ming Liew
Nutrients 2023, 15(6), 1351; https://doi.org/10.3390/nu15061351 - 10 Mar 2023
Cited by 23 | Viewed by 4732
Abstract
There is accumulating evidence on the beneficial effects of probiotic supplementation for patients with depressive disorders. However, prior reviews on the topic have largely focused on clinical effectiveness with limited emphasis on the underlying mechanisms of action and effects of probiotics on gut [...] Read more.
There is accumulating evidence on the beneficial effects of probiotic supplementation for patients with depressive disorders. However, prior reviews on the topic have largely focused on clinical effectiveness with limited emphasis on the underlying mechanisms of action and effects of probiotics on gut microbiota. In accordance with PRISMA guidelines, a systematic literature search of Medline, EMBASE and the Cochrane Library using combinations of the key words, (“depress*” OR “MDD” OR “suicide”), (“probiotic” OR “Lactobacillus” OR “Bifidobacterium”) AND (“gut” OR “gut micr*” OR “microbiota”), as well as grey literature was performed. We found seven clinical trials involving patients with major depressive disorder (MDD). The small number of studies and heterogeneous sources of data precluded meta-analysis. Most trials (other than one open-label trial) had a low-to-moderate risk of bias, which was largely due to a lack of control for the effects of diet on gut microbiota. Probiotic supplementation yielded only modest effects on depressive symptoms and there were no consistent effects on gut microbiota diversity, and in most instances, no significant alterations in gut microbiota composition were observed after four to eight weeks of probiotic intervention. There is also a lack of systematic reporting on adverse events and no good longer-term data. Patients with MDD may require a longer time to show clinical improvement and the microbial host environment may also need longer than eight weeks to produce significant microbiota alterations. To advance this field, further larger-scale and longer-term studies are required. Full article
(This article belongs to the Special Issue Effects of Probiotics on the Human Metabolome)
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3 pages, 218 KiB  
Reply
Reply to Lee, S.Y. Comment on “Sung et al. Body Fat Reduction Effect of Bifidobacterium breve B-3: A Randomized, Double-Blind, Placebo Comparative Clinical Trial. Nutrients 2023, 15, 28”
by Hyun Kyung Sung, Sang Jun Youn, Yong Choi, Sang Won Eun and Seon Mi Shin
Nutrients 2023, 15(5), 1094; https://doi.org/10.3390/nu15051094 - 22 Feb 2023
Cited by 1 | Viewed by 851
Abstract
Thank you kindly for your interest in and opinion [...] Full article
(This article belongs to the Special Issue Effects of Probiotics on the Human Metabolome)
2 pages, 186 KiB  
Comment
Comment on Sung et al. Body Fat Reduction Effect of Bifidobacterium breve B-3: A Randomized, Double-Blind, Placebo Comparative Clinical Trial. Nutrients 2023, 15, 28
by Sang Yeoup Lee
Nutrients 2023, 15(5), 1093; https://doi.org/10.3390/nu15051093 - 22 Feb 2023
Cited by 1 | Viewed by 1031
Abstract
I read with interest the paper by Sung et al. entitled “Body Fat Reduction Effect of Bifidobacterium breve B-3: A Randomized, Double-Blind, Placebo Comparative Clinical Trial” where a reduction in body fat mass after Bifidobacterium breve B-3 (BB-3) ingestion for 12 weeks was [...] Read more.
I read with interest the paper by Sung et al. entitled “Body Fat Reduction Effect of Bifidobacterium breve B-3: A Randomized, Double-Blind, Placebo Comparative Clinical Trial” where a reduction in body fat mass after Bifidobacterium breve B-3 (BB-3) ingestion for 12 weeks was reported [...] Full article
(This article belongs to the Special Issue Effects of Probiotics on the Human Metabolome)
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