Diversity

16 pages, 2138 KiB

Open AccessEditor’s ChoiceArticle

A New Miniature Species of Arthroleptis (Anura: Arthroleptidae) from Nyungwe National Park, Rwanda

by J. Maximilian Dehling

Diversity 2023, 15(10), 1104; https://doi.org/10.3390/d15101104 - 23 Oct 2023

Viewed by 1882

A new, very small-sized species of Arthroleptis is described from western Rwanda. The new species occurs locally endemic in Nyungwe Forest and Cyamudongo Forest, where it inhabits the leaf litter of montane forests between 1800 and 2200 m a.s.l. It differs from all [...] Read more.

A new, very small-sized species of Arthroleptis is described from western Rwanda. The new species occurs locally endemic in Nyungwe Forest and Cyamudongo Forest, where it inhabits the leaf litter of montane forests between 1800 and 2200 m a.s.l. It differs from all other members of the genus by a unique combination of morphological characters, including size (SVL of adult males 16.0–16.5 mm), skin texture, length of hindlimbs, and ventral colour pattern; by characteristics of its advertisement call that consists of a single note lasting 17.4 ± 6.4 [11–32] ms and has a dominant frequency of 5861 ± 188 [5531–6029] Hz; and also in the sequence of the 16S rRNA gene that differs from available homologous sequences of other species of the genus by an uncorrected p-distance of at least 4.6%. Details of the natural history as well as two additional call types are described. Full article

(This article belongs to the Section Animal Diversity)

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21 pages, 1952 KiB

Open AccessArticle

Differences in the Composition of Akkermansia Species and Families of Christensenellaceae and Ruminococcaceae Bacteria in the Gut Microbiota of Healthy Polish Women following a Typical Western Diet

by Barbara Zapała, Justyna Pustelnik, Alicja Dudek and Tomasz Milewicz

Diversity 2023, 15(10), 1103; https://doi.org/10.3390/d15101103 - 23 Oct 2023

Viewed by 1116

Abstract

The gastrointestinal microbiota consists of trillions of microorganisms that live symbiotically in the human body. The main factor influencing the formation of the gastrointestinal microbiota is lifestyle, particularly the diet of people from different geographic regions. As described in several reports, the gut [...] Read more.

The gastrointestinal microbiota consists of trillions of microorganisms that live symbiotically in the human body. The main factor influencing the formation of the gastrointestinal microbiota is lifestyle, particularly the diet of people from different geographic regions. As described in several reports, the gut microbiota composition of healthy adults can be stable for years. However, the relative abundance of each microbe fluctuates over time, and it varies between individuals and within individuals over the course of their lives depending on many factors such as diet and gender. The study aimed to define the basic profile of the oral and gut microbiota in healthy people of Polish ethnicity under the Western diet, showing the stability under one type of diet and dependence on gender. The study group included 144 healthy adults. The research materials were swabs and stool samples. The KomPAN questionnaire was used to examine eating habits. Bacterial 16S rRNA genes were sequenced using the next-generation sequencing (NGS) technology. The respondents followed a typical Western diet. There were no statistically significant differences in alpha species diversity in the oral and gut microbiota between the female and male groups. Statistically significant differences were found in the beta diversity between gut microbiota composition in women and men (p < 0.048). The oral microbiota was dominated by Firmicutes and Proteobacteria, and Firmicutes dominated the gut microbiota. According to the received results, it was found that in healthy adults of Polish origin, there is a basic profile of the oral and gut microbiota ensuring good health condition. Full article

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14 pages, 2742 KiB

Open AccessArticle

Long-Term Stability of Harvest Mouse Population

by Linas Balčiauskas and Laima Balčiauskienė

Diversity 2023, 15(10), 1102; https://doi.org/10.3390/d15101102 - 23 Oct 2023

Viewed by 2863

Abstract

The Eurasian harvest mouse (Micromys minutus) is a tiny rodent of the Palearctic and Indomalayan regions, with a distinct regional species status in Europe and irregularly varying local numbers. We analysed the population of M. minutus in Lithuania (Northern Europe) based [...] Read more.

The Eurasian harvest mouse (Micromys minutus) is a tiny rodent of the Palearctic and Indomalayan regions, with a distinct regional species status in Europe and irregularly varying local numbers. We analysed the population of M. minutus in Lithuania (Northern Europe) based on trapping data from 1975 to 2022 and owl pellet data from 1986 to 2009. Based on both datasets, the proportion of this species in the small mammal community was similar, 1.13% and 0.62%, respectively. The proportions have remained stable across all decades. Relative abundance was 1.19 ± 0.19 individuals per 1000 trap days, stable over the long term and across the country. Irregular fluctuations in abundance were observed in some of the sites surveyed. The highest average RA was recorded in open sedge habitats, meadows and marshes. The absolute highest RA was 88 individuals per 1000 trap days in floodplain meadows after a major flood. Although the negative impact of habitat anthropogenisation has been confirmed, M. minutus does not require special conservation measures in Lithuania. Full article

(This article belongs to the Special Issue Advances in Diversity and Conservation of Terrestrial Small Mammals—2nd Edition)

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14 pages, 946 KiB

Open AccessArticle

Bacterial Products and Their Effect on the Shrubby Legume Calicotome villosa (Poir.) Link

by María A. Pérez-Fernández, Irene Ariadna De-Lara-Del-Rey and Anathi Magadlela

Diversity 2023, 15(10), 1101; https://doi.org/10.3390/d15101101 - 23 Oct 2023

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Abstract

Calicotome villosa is a eurioic legume with broad distribution in the south of Europe. It can grow in almost any type of soil as well as in humid and dry and nutrient-deficient ecosystems. The broad distribution and eurioic nature of C. villosa may [...] Read more.

Calicotome villosa is a eurioic legume with broad distribution in the south of Europe. It can grow in almost any type of soil as well as in humid and dry and nutrient-deficient ecosystems. The broad distribution and eurioic nature of C. villosa may be attributed to its ability to establish endophytic associations with plant-growth-promoting (PGP) bacteria housed in the nodules and rootlets. This study examined the legume–microbe interaction of C. villosa growing in two contrasting locations: a hilltop with high sun irradiance and drought, and a valley bottom with a low level of radiation and sufficient soil humidity for plant growth. Calicotome villosa adult plants established endophytic interactions with bacteria in six genera: Pseudomonas, Stenotrophomonas, Bacillus, Paenibacillus, Brevicacterium, and Rhizobium. Plants growing on the hilltop had associated lower bacterial richness than those grown on the valley bottom. All strains were drought-tolerant and produced siderophores, IAA, HCN, and NH₃ that stimulated plant performance in C. villosa plants and the other four legumes commonly present in the understory of the shrub communities. The legumes’ capacity to selectively host symbiotic bacteria that enhance plant survival in harsh conditions partly accounts for the diverse partnerships between C. villosa plants and their symbionts, ultimately explaining the wide distribution of this plant species. Full article

(This article belongs to the Topic Plant-Associated Microbiota: From the Assembly to the Function)

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15 pages, 5209 KiB

Open AccessArticle

Species Diversity and Soil Interconstraints Exert Significant Influences on Plant Survival during Ecological Restoration in Semi-Arid Mining Areas

by Zeyu Shi, Zhongke Bai, Donggang Guo, Shuai Li and Meijing Chen

Diversity 2023, 15(10), 1100; https://doi.org/10.3390/d15101100 - 22 Oct 2023

Viewed by 956

Abstract

The extensive vegetation destruction in opencast mining regions has led to various environmental problems, including the loss of biodiversity. However, our understanding of biodiversity’s response to survival, as well as its interactions with soil characteristics and climate change, remains limited. To address this [...] Read more.

The extensive vegetation destruction in opencast mining regions has led to various environmental problems, including the loss of biodiversity. However, our understanding of biodiversity’s response to survival, as well as its interactions with soil characteristics and climate change, remains limited. To address this gap, we analyzed data from a long-term monitoring site in an opencast coal mine reclamation region, focusing on the effects of species diversity, soil properties, and climate factors on the survival of four key restored species at 17, 22, and 27 years after planting. Our findings indicate that increased plot diversity is associated with decreased overall survival, and significant variations in diversity levels were observed among different plots. We also found that soil properties influenced species’ survival response to diversity, and these responses varied with stand age. In the early stages of succession, soil and diversity primarily affect species survival, with diversity playing a more dominant role as stand age increases. Overall, our findings suggest that the interaction between species diversity and soil composition significantly influences the survival of species. Continuous monitoring is necessary to validate these conclusions, particularly considering the diverse planting patterns in mine reclamation areas that can result in varying feedbacks of biodiversity on species survival. Full article

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14 pages, 3195 KiB

Open AccessArticle

Seasonal Variations in Invertebrates Sheltered among Corallina officinalis (Plantae, Rodophyta) Turfs along the Southern Istrian Coast (Croatia, Adriatic Sea)

by Moira Buršić, Andrej Jaklin, Milvana Arko Pijevac, Branka Bruvo Mađarić, Lucija Neal, Emina Pustijanac, Petra Burić, Neven Iveša, Paolo Paliaga and Ljiljana Iveša

Diversity 2023, 15(10), 1099; https://doi.org/10.3390/d15101099 - 22 Oct 2023

Viewed by 949

Abstract

Available research on invertebrates in Corallina officinalis settlements shows a high level of biodiversity due to a complex habitat structure. Our aim was to examine seasonal changes in the invertebrate population, considering the algae’s growth patterns. Nine locations with over 90% algal coverage [...] Read more.

Available research on invertebrates in Corallina officinalis settlements shows a high level of biodiversity due to a complex habitat structure. Our aim was to examine seasonal changes in the invertebrate population, considering the algae’s growth patterns. Nine locations with over 90% algal coverage were selected in southern Istria, where quantitative sampling was performed using six replicates of 5 × 5 cm quadrats in each location. Results showed that 29,711 invertebrates were found during winter (maximum algae growth) and 22,292 during summer (minimum algae growth), with an extrapolated average density of 220,000 and 165,200 individuals per square meter, respectively. The total number of individuals showed a linear increase as the algae biomass increased. The highest density, 586,000 individuals, was recorded in the Premantura area during winter. Dominant groups such as amphipods, polychaetes, bivalves and gastropods made up over 80% of the invertebrates. Our study confirms high invertebrate richness in the C. officinalis settlements, with the maximum density being the highest when compared to previously published data. Full article

(This article belongs to the Special Issue Ecology and Biogeography of Marine Benthos)

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18 pages, 3415 KiB

Open AccessArticle

Characteristics of Grassland Plant Community Change with Elevation and Its Relationship with Environmental Factors in the Burqin Forest Region of the Altai Mountains

by Xi Zhang, Mao Ye, Xiaoting Pan, Qingzhi He, Weilong Chen, Guoyan Zeng and Miaomiao Li

Diversity 2023, 15(10), 1098; https://doi.org/10.3390/d15101098 - 22 Oct 2023

Viewed by 1374

Abstract

The change grassland plant communities demonstrate with elevation has been one of the hot issues in ecological research, and there remain many unsolved problems. In order to further elucidate the rules of grassland plant community change with elevation, this study took the Burqin [...] Read more.

The change grassland plant communities demonstrate with elevation has been one of the hot issues in ecological research, and there remain many unsolved problems. In order to further elucidate the rules of grassland plant community change with elevation, this study took the Burqin forest area as a research object, using field survey, redundancy analysis and grey correlation analysis to comprehensively assess the characteristics of change in grassland plant communities with elevation and the relationship of this evolution with environmental factors. The results showed that (1) the numbers of species, community biomass, community cover and community densities of grassland plant communities showed an “M” pattern with the increase in elevation. There were significant changes in the importance values and dominance of plants at different elevations; with increasing elevation, grassland plants became primarily dominated by cold-tolerant and well-adapted perennials. (2) The similarity coefficients of grassland plant communities at different elevations ranged from 0.06 to 0.62, i.e., from very dissimilar to moderately similar. (3) As the elevation increased, the Margalef species richness index, Shannon–Wiener diversity index, Simpson dominance index and Alatalo evenness index all showed an “M” pattern trend. (4) The degrees of correlation between temperature and precipitation and community biomass and species diversity were at a high level, and these were the most important environmental factors affecting the biomass and species diversity of grassland plant communities in the Burqin forest area. The results of this study can provide a theoretical basis for the rational utilization of grassland resources and for the sustainable development of grassland ecosystems in the Burqin forest area. Full article

(This article belongs to the Topic Plant Systematics and Taxonomy)

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16 pages, 5030 KiB

Open AccessArticle

Soil Biological Properties along a Topographic Gradient in Brazil’s Atlantic Forest Biome

by Diego Lang Burak, Thamyres Cardoso da Silveira, Luciana Ventura Machado and Eduardo de Sá Mendonça

Diversity 2023, 15(10), 1097; https://doi.org/10.3390/d15101097 - 21 Oct 2023

Viewed by 903

Abstract

The Atlantic Forest exhibits remarkable floristic diversity over short distances, and when combined with altitude, it results in variations in soil biological properties and hydrological dynamics. This study aimed to quantify the distribution pattern of soil biological properties along a small topographic gradient [...] Read more.

The Atlantic Forest exhibits remarkable floristic diversity over short distances, and when combined with altitude, it results in variations in soil biological properties and hydrological dynamics. This study aimed to quantify the distribution pattern of soil biological properties along a small topographic gradient and identify how these properties are related to soil chemical, physical, and topographical attributes in an Atlantic Forest fragment in Brazil. Plots were established along hillslope positions varying from 100 to 180 m of altitude. Soil biological characterization was performed at a depth of 0.0–0.10 m in both summer and winter seasons. The lowland showed higher microbial biomass nitrogen in summer (57.28 ± 5.57 μg g⁻¹ soil) and higher anaerobically mineralizable nitrogen in summer and winter (42.70 ± 2.14 mg kg⁻¹ and 41.06 ± 3.37 mg kg⁻¹, respectively). The midland showed lower microbial biomass carbon, enzymatic activity, and soil moisture in both seasons, and higher metabolic coefficients in summer. Soil chemical properties exerted a greater influence on the variability of biological properties in both seasons. The land slope conditioned lower microbial activity and organic cycling in the midland. Soil biological properties were affected by seasonality. Even a small altitudinal gradient (up to 100 m) in the Sea of Hills regions of the Atlantic Forest can lead to significant changes in soil biological and chemical attributes. Full article

(This article belongs to the Special Issue Conservation of Cultural and Biological Diversity in the Mesoamerican Region II)

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15 pages, 363 KiB

Open AccessReview

Flea (Insecta: Siphonaptera) Family Diversity

by Robert L. Bossard, Marcela Lareschi, Mara Urdapilleta, Cristina Cutillas and Antonio Zurita

Diversity 2023, 15(10), 1096; https://doi.org/10.3390/d15101096 - 21 Oct 2023

Viewed by 1518

Abstract

This overview of extant Siphonaptera lists 19 families with major hosts and their general distribution, estimated numbers of genera, species, and subspecies, with a brief taxonomic and phylogenetic review. With around 10 new species described annually, extant flea fauna comprises an estimated 249 [...] Read more.

This overview of extant Siphonaptera lists 19 families with major hosts and their general distribution, estimated numbers of genera, species, and subspecies, with a brief taxonomic and phylogenetic review. With around 10 new species described annually, extant flea fauna comprises an estimated 249 genera, 2215 species, and 714 subspecies globally, mostly mammal parasites, but 5% of species are on birds. Host specificity varies from euryxenous (i.e., infesting two or more host orders) (e.g., cat fleas, Ctenocephalides felis felis) to monoxenous (e.g., rabbit fleas, Spilopsyllus cuniculi). The largest family is the paraphyletic Hystrichopsyllidae, making up a third of all flea species. The largest monophyletic family, Ceratophyllidae (rodent and bird fleas), comprises another 20% and has dispersed to every continent, including Antarctica. Fleas descend from scorpionflies (Mecoptera), possibly snow scorpionflies (Boreidae) or Nannochoristidae, and even giant fossils found from the Mesozoic could be Siphonaptera. The diversification of fleas shows evidence of taxon cycles. “Relict” families, such as helmet fleas (Stephanocircidae), have a disjunct distribution reflecting the breakup of Gondwanaland 70 million years ago. “Niche specialists” include nest fleas (Anomiopsyllus), bat fleas (Ischnopsyllidae), and burrowing fleas, such as chigoes (Tungidae). By contrast, Ceratophyllidae fleas could be considered “great speciators”. Cat fleas and several other synanthropic flea species are invasive “supertramps”. Although those species are intensively studied, many flea species and their hosts require urgent surveys and conservation. Full article

(This article belongs to the Section Phylogeny and Evolution)

26 pages, 16436 KiB

Open AccessArticle

Reconstructing the Paleoenvironmental Evolution of Lake Kolon (Hungary) through Palaeoecological, Statistical and Historical Analyses

by Tamás Zsolt Vári, Elemér Pál-Molnár and Pál Sümegi

Diversity 2023, 15(10), 1095; https://doi.org/10.3390/d15101095 - 20 Oct 2023

Viewed by 971

Abstract

The research utilizes an interdisciplinary approach, combining geological, ecological, and historical methods. It delves into the environmental evolution of Lake Kolon over a span of 17,700 years, shedding light on the intricate interplay between geological processes and ecological changes. The historical, statistical (PCA, [...] Read more.

The research utilizes an interdisciplinary approach, combining geological, ecological, and historical methods. It delves into the environmental evolution of Lake Kolon over a span of 17,700 years, shedding light on the intricate interplay between geological processes and ecological changes. The historical, statistical (PCA, DCA), and palaeoecological analyses centers on a core sequence situated in the heart of the lake, building upon previous research endeavors (pollen, malacological, macrobotanical and sedimentological analyses with radiocarbon dating). Forest fires occurred at the end of the Last Glacial Maximum (LGM); the boreal forest–steppe environment changed into temperate deciduous forest at the Pleistocene–Holocene boundary; human-induced environmental change into open parkland occurred; and from medieval times, communities used the land as pasture. This type of reconstruction is crucial for understanding how ecosystems respond to climate change over time, which has broader implications for modern-day conservation efforts and managing ecosystems in the face of ongoing climate change. Full article

(This article belongs to the Special Issue Diversity Hotspots)

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13 pages, 3353 KiB

Open AccessArticle

Taxonomy and Phylogeny of Endophytic Fungi (Chaetomiaceae) Associated with Healthy Leaves of Mangifera indica in Yunnan, China

by Er-Fu Yang, Samantha C. Karunarathna, Dong-Qin Dai, Alviti Kankanamalage Hasith Priyashantha, Itthayakorn Promputtha, Abdallah Elgorban and Saowaluck Tibpromma

Diversity 2023, 15(10), 1094; https://doi.org/10.3390/d15101094 - 20 Oct 2023

Cited by 1 | Viewed by 1048

Abstract

Mangoes belong to Mangifera (Anacardiaceae), which contains 69 species, but only Mangifera indica is popularly cultivated and commercialized. Mango is one of the most important crops grown in China’s Yunnan Province and significantly contributes to the economic security of these locals. Endophytic fungi [...] Read more.

Mangoes belong to Mangifera (Anacardiaceae), which contains 69 species, but only Mangifera indica is popularly cultivated and commercialized. Mango is one of the most important crops grown in China’s Yunnan Province and significantly contributes to the economic security of these locals. Endophytic fungi have been recognized as beneficial microbes that improve plant growth, productivity, and survivability under environmental stress. Nevertheless, many host plant-related endophytic fungi are yet to be identified, including the mango-related species. During this study, we recognized three different fungal species in the family Chaetomiaceae derived from healthy mango (Mangifera indica) leaves based on morphological examinations coupled with multi-gene phylogenetic analysis (ITS, LSU, rpb2, and tub2). These species are Dichotomopilus funicola (KUNCC23-13347) and Humicola wallefii (KUNCC22-10759, 23-13348), derived from new hosts, and a new species of Arcopilus hongheensis (KUNCC22-10767, 23-13346). Full article

(This article belongs to the Special Issue The Hidden Fungal Diversity in Asia 2.0)

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13 pages, 2541 KiB

Open AccessArticle

Genetic Diversity and Structure of Quercus petraea (Matt.) Liebl. Populations in Central and Northern Romania Revealed by SRAP Markers

by Florin Alexandru Rebrean, Adrian Fustos, Katalin Szabo, Tabita-Teodora Lisandru, Mihaela Simona Rebrean, Mircea Ioan Varga and Doru Pamfil

Diversity 2023, 15(10), 1093; https://doi.org/10.3390/d15101093 - 19 Oct 2023

Viewed by 1171

Abstract

The genetic variability of five populations of Quercus petraea originating from the Transylvania and Maramureș regions of Romania was investigated in this study to provide insights into the species’ adaptability, population dynamics, and potential for preservation in the face of environmental challenges. To [...] Read more.

The genetic variability of five populations of Quercus petraea originating from the Transylvania and Maramureș regions of Romania was investigated in this study to provide insights into the species’ adaptability, population dynamics, and potential for preservation in the face of environmental challenges. To achieve this, sequence-related amplified polymorphism (SRAP) markers, in conjunction with a set of 18 primer combinations, were employed. The outcomes of the analysis revealed a range of polymorphisms spanning from 69.78% to 85.75%. Additionally, the assessment of genetic diversity using Shannon’s information index (I) yielded values ranging between 0.2887 and 0.3955, while Nei’s gene diversity (He) exhibited a spectrum from 0.1833 to 0.2582. The analysis of genetic variability, conducted via molecular variance (AMOVA), unveiled that 9% of the genetic variation was attributable to differences among the populations, while a substantial 91% resided within the populations. A further investigation of the population structure revealed that the construction of a UPGMA dendrogram based on Nei’s genetic distances elucidated the presence of two principal genetic clusters, a finding that was reinforced by a Principal Coordinate Analysis (PCoA). The genetic diversity revealed by Quercus petraea using SRAP molecular markers offers promising potential for upcoming breeding programs to identify optimal genitors, facilitating the development of well-adapted oak populations in the Transylvania and Maramureș regions. Full article

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11 pages, 3104 KiB

Open AccessArticle

Characterization of the Root Nodule Microbiome of the Exotic Tree Falcataria falcata (Fabaceae) in Guangdong, Southern China

by Siyu Xiang, Shu Yan, Qianxi Lin, Rong Huang, Runhui Wang, Ruping Wei, Guandi Wu and Huiquan Zheng

Diversity 2023, 15(10), 1092; https://doi.org/10.3390/d15101092 - 18 Oct 2023

Viewed by 994

Abstract

Falcataria falcata is an exotic tree species that was imported to southern China around 1940 and has been widely planted in the Guangdong province of China. Using the 16S rRNA amplicon sequencing approach, we investigated the composition of the bacterial endophytes in the [...] Read more.

Falcataria falcata is an exotic tree species that was imported to southern China around 1940 and has been widely planted in the Guangdong province of China. Using the 16S rRNA amplicon sequencing approach, we investigated the composition of the bacterial endophytes in the root nodules of naturally grown F. falcata and elucidated the core bacterial endophyte group. Across all samples, there were 575 bacterial genera and 29 bacterial phyla. Proteobacteria accounted for 42–90% relative abundance in all regions. Notably, Bradyrhizobium, Paucibacter, Rhizobium, and Mesorhizobium were consistently detected in all regions studied. Among these, Bradyrhizobium (13–37%) and Paucibacter (1–34%) were the dominant genera. Despite the differences in endophytic amplicon sequence variants (ASVs) across all regions, our results demonstrate that some ASVs, which have been termed herein as commonly shared core ASVs (c-ASVs), still inhabit F. falcata root nodules across multiple regions simultaneously. More importantly, some c-ASVs dominated in F. falcata root nodules across multiple regions. This study demonstrated the consistency of the bacterial endophyte communities of F. falcata root nodules. Full article

(This article belongs to the Special Issue Microbiota Diversity in Plants and Forest)

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21 pages, 6845 KiB

Open AccessArticle

Spatiotemporal Patterns in the Distribution of Albacore, Bigeye, Skipjack, and Yellowfin Tuna Species within the Exclusive Economic Zones of Tonga for the Years 2002 to 2018

by Siosaia Vaihola, Dawit Yemane and Stuart Kininmonth

Diversity 2023, 15(10), 1091; https://doi.org/10.3390/d15101091 - 18 Oct 2023

Cited by 1 | Viewed by 1166

Abstract

The Tongan fisheries targeting the species of albacore (Thunnus alalunga), bigeye (Thunnus obesus), skipjack (Katsuwonus pelamis), and yellowfin tuna (Thunnus albacares), comprising the main tuna catch landed, within the EEZ of Tonga is critical to [...] Read more.

The Tongan fisheries targeting the species of albacore (Thunnus alalunga), bigeye (Thunnus obesus), skipjack (Katsuwonus pelamis), and yellowfin tuna (Thunnus albacares), comprising the main tuna catch landed, within the EEZ of Tonga is critical to the economy of Tonga. Thus, it is crucial to study the spatiotemporal pattern of their catch and the influence of environmental and physical variables, in addition to the month and year of the catch. To this end, sets of eight generalized additive models were applied to model the distribution of these four species. Selection among competing models was carried out based on k-fold cross-validation, using RMSPE prediction error as a measure of model predictive performance. The following sets of predictors were considered; sea surface temperature, sea surface chlorophyll, bottom depth, month, and year. In addition, to assess the influence of fronts, gradients in SST and Chl-a were computed and used as predictors. Catch year was the most important variable for all, except Albacore tuna, for which month was the important variable. The third most important variable was SST for albacore and bigeye tuna, whereas bottom depth was the most important variable for skipjack and yellowfin tuna. A standardized index of CPUE indicates mostly inter-annual variation in CPUE for albacore and bigeye tuna, whereas a it indicates a general increase in CPUE for skipjack and yellowfin tuna. Hotspots of albacore tuna catches are around the northern and southern edges of the exclusive economic zone and typically during the months of June to August. The bigeye tuna hotspots were concentrated on the eastern side of the islands, in waters overlying trenches; this was most obvious during the months of January to June. Skipjack tuna hotspots were near the edges of the exclusive economic zone, although it is caught in smaller amounts to the three tuna species considered and higher catch rates were observed only after 2014. For yellowfin tuna, the highest catch rates were concentrated around the islands and descending towards the southern edge of the EEZ. As part of the initiative of this study to support national optimal resource management, this study generated standardized CPUE (indices of abundance), an important input in stock assessment, and also looked into the potential influence of environmental and physical variables on the CPUE of these valuable tuna stocks within the EEZ of Tonga. Full article

(This article belongs to the Special Issue Marine Biodiversity and Ecosystems Management—2nd Edition)

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22 pages, 3099 KiB

Open AccessEditor’s ChoiceArticle

Fusarium and Sarocladium Species Associated with Rice Sheath Rot Disease in Sub-Saharan Africa

by Oluwatoyin Oluwakemi Afolabi, Vincent de Paul Bigirimana, Gia Khuong Hoang Hua, Feyisara Eyiwumi Oni, Lien Bertier, John Onwughalu, Olumoye Ezekiel Oyetunji, Ayoni Ogunbayo, Mario Van De Velde, Obedi I. Nyamangyoku, Sarah De Saeger and Monica Höfte

Diversity 2023, 15(10), 1090; https://doi.org/10.3390/d15101090 - 17 Oct 2023

Cited by 2 | Viewed by 1460

Abstract

Sarocladium and Fusarium species are commonly identified as causal agents of rice sheath rot disease worldwide. However, limited knowledge exists about their genetic, pathogenic, and toxigenic diversity in sub-Saharan African (SSA) countries, where an increasing incidence of this disease has been observed. In [...] Read more.

Sarocladium and Fusarium species are commonly identified as causal agents of rice sheath rot disease worldwide. However, limited knowledge exists about their genetic, pathogenic, and toxigenic diversity in sub-Saharan African (SSA) countries, where an increasing incidence of this disease has been observed. In this study, seventy fungal isolates were obtained from rice plants displaying disease symptoms in rice research programs and farmer fields in Mali, Nigeria, and Rwanda. Thus, an extensive comparative analysis was conducted to assess their genetic, pathogenic, and toxigenic diversity. The Fusarium spp. were characterized using the translation elongation factor (EF-1α) region, while a concatenation of Internal Transcribed Spacer (ITS) and Actin-encoding regions were used to resolve Sarocladium species. Phylogenetic analysis revealed four Fusarium species complexes. The dominant complex in Nigeria was the Fusarium incarnatum-equiseti species complex (FIESC), comprising F. hainanense, F. sulawesiense, F. pernambucatum, and F. tanahbumbuense, while F. incarnatum was found in Rwanda. The Fusarium fujikuroi species complex (FFSC) was predominant in Rwanda and Mali, with species such as F. andiyazi, F. madaense, and F. casha in Rwanda and F. annulatum and F. nygamai in Mali. F. marum was found in Nigeria. Furthermore, Fusarium oxysporum species complex (FOSC) members, F. callistephi and F. triseptatum, were found in Rwanda and Mali, respectively. Two isolates of F. acasiae-mearnsii, belonging to the Fusarium sambucinum species complex (FSAMSC), were obtained in Rwanda. Isolates of Sarocladium, which were previously classified into three phylogenetic groups, were resolved into three species, which are attenuatum, oryzae, and sparsum. S. attenuatum was dominant in Rwanda, while S. oryzae and S. sparsum were found in Nigeria. Also, the susceptibility of FARO44, a rice cultivar released by Africa Rice Centre (AfricaRice), was tested against isolates from the four Fusarium species complexes and the three Sarocladium species. All isolates evaluated could induce typical sheath rot symptoms, albeit with varying disease development levels. In addition, liquid chromatography-tandem mass spectrometry (LC-MS/MS) was used to determine variation in the in vitro mycotoxins of the Fusarium species. Regional differences were observed in the in vitro mycotoxins profiling. Out of the forty-six isolates tested, nineteen were able to produce one to four mycotoxins. Notably, very high zearalenone (ZEN) production was specific to the two F. hainanense isolates from Ibadan, Nigeria, while Fusarium nygamai isolates from Mali produced high amounts of fumonisins. To the best of our knowledge, it seems that this study is the first to elucidate the genetic, pathogenic, and toxigenic diversity of Fusarium species associated with the rice sheath rot disease complex in selected countries in SSA. Full article

(This article belongs to the Section Microbial Diversity and Culture Collections)

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14 pages, 1532 KiB

Open AccessEditor’s ChoiceArticle

Non-Native Marine Macroalgae of the Azores: An Updated Inventory

by Daniela Gabriel, Ana Isabel Ferreira, Joana Micael and Suzanne Fredericq

Diversity 2023, 15(10), 1089; https://doi.org/10.3390/d15101089 - 17 Oct 2023

Cited by 2 | Viewed by 1171

Abstract

Non-native species (NNS) represent a threat to biodiversity, and their occurrence and distribution should be periodically updated and made easily available to researchers and policymakers. An updated inventory of macroalgal NNS currently present in the Azores was produced based on published reports. Data [...] Read more.

Non-native species (NNS) represent a threat to biodiversity, and their occurrence and distribution should be periodically updated and made easily available to researchers and policymakers. An updated inventory of macroalgal NNS currently present in the Azores was produced based on published reports. Data concerning the first report and the distribution in the archipelago are provided for each species, as well as their respective native ranges and possible vectors of introduction. The resulting list comprises 42 taxa, i.e., 8.05% of the marine flora presently reported in the Azores, with 16 new NNS recorded over the last decade. The most isolated islands of the Western Group presented lower numbers of NNS (4.25% and 6.25%). In contrast, the two islands with the most used marina for transatlantic recreational sailing presented higher numbers (12.90% and 16.87%). Shipping is the main introduction vector (68%), whereas most macroalgal NNS are originally from the Pacific Ocean (31%) and the Indo-Pacific (31%). The presence of 13 species is restricted to single islands, and no species is reported exclusively in the Western group. Asparagopsis armata is the only algal NNS reported from all islands of the Azores. Future work is proposed to support policymaking. Full article

(This article belongs to the Topic Biodiversity in the Azores: A Whole Biota Assessment)

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25 pages, 1590 KiB

Open AccessReview

Microbial Diversity in Bee Species and Bee Products: Pseudomonads Contribution to Bee Well-Being and the Biological Activity Exerted by Honey Bee Products: A Narrative Review

by Christina Tsadila, Chiara Amoroso and Dimitris Mossialos

Diversity 2023, 15(10), 1088; https://doi.org/10.3390/d15101088 - 16 Oct 2023

Cited by 2 | Viewed by 1875

Abstract

Bees are important pollinators worldwide, promoting sustainability in agriculture and natural ecosystems. Moreover, honey bees produce a variety of honey bee products (beehive products). Honey is the main edible bee product. The consumption of pollen, bee bread, royal jelly, and propolis is becoming [...] Read more.

Bees are important pollinators worldwide, promoting sustainability in agriculture and natural ecosystems. Moreover, honey bees produce a variety of honey bee products (beehive products). Honey is the main edible bee product. The consumption of pollen, bee bread, royal jelly, and propolis is becoming more popular nowadays. All these products are characterized by high nutritional value and/or bioactivity. A high microbial diversity has been reported in bees and beehive products, forming distinct microbial communities. The honey bee gut microbiome actively promotes good health and nutrient availability for the host. Furthermore, it prevents food spoilage and contributes to the maintenance of good hygiene conditions in the hive. Pseudomonads are often reported in investigations on bee and bee product microbiomes. Diverse Pseudomonas species demonstrate high metabolic adaptability, producing a wide range of bioactive enzymes and secondary metabolites. Several studies have provided evidence that Pseudomonads might play a role in bee well-being and the bioactivity exerted by honey bee products, though further research is warranted to fully understand the effects and mechanisms. The aim of this narrative review is to highlight the importance of Pseudomonads in the context of up-to-date knowledge regarding the bee and bee product microbiomes. Full article

(This article belongs to the Special Issue Pseudomonas Biology and Biodiversity)

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17 pages, 1961 KiB

Open AccessArticle

Climate Change Impacts on Species Composition and Floristic Regions in Thailand

by Yongyut Trisurat, Nantida Sutummawong, Patrick R. Roehrdanz and Auschada Chitechote

Diversity 2023, 15(10), 1087; https://doi.org/10.3390/d15101087 - 15 Oct 2023

Cited by 3 | Viewed by 1621

Abstract

Tropical forests are vulnerable to climate change including increased temperatures and changes to rainfall variation. Here, we use Thailand as a case study for assessing the impacts of the shared socio-economic pathway and climate scenarios on changes to the distribution and extent of [...] Read more.

Tropical forests are vulnerable to climate change including increased temperatures and changes to rainfall variation. Here, we use Thailand as a case study for assessing the impacts of the shared socio-economic pathway and climate scenarios on changes to the distribution and extent of floristic regions. To address this question, we assigned floristic regions based on a structured cluster analysis of modeled species ranges, and evaluated how those regions respond under scenarios of climate change. A total of 201 plant species with sufficient occurrence data obtained from the systematic forest inventory plots across the country and global datasets were chosen for distribution modeling. Environmental variables, including soils, topography and bioclimatic variables were compiled to model both current and 2050 distributions. Potential floristic regions were classified using a clustering algorithm on the pixel-wise species compositions—resulting in 12 floristic regions representative of both current climate species compositions and projected future species assemblages. Five floristic regions are projected to experience little change in their geographic distribution, while the remainder are projected to be substantially displaced spatially. Additionally, two of the identified floristic regions are not well represented in protected areas—with less than 50% of the current geographic distribution in each region in some form of protected status. Full article

(This article belongs to the Section Biogeography and Macroecology)

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16 pages, 2130 KiB

Open AccessArticle

First Report of Diseases and Compromised Health Conditions on Hard Corals around Rodrigues Island, Southwest Indian Ocean

by Shakeel Yavan Jogee, Shivam Gopalsing, Sruti Jeetun, Melanie Ricot, Nawsheen Taleb-Hossenkhan, Sushma Mattan-Moorgawa, Deepeeka Kaullysing, Diah Permata Wijayanti, Beatriz Estela Casareto, Yoshimi Suzuki and Ranjeet Bhagooli

Diversity 2023, 15(10), 1086; https://doi.org/10.3390/d15101086 - 15 Oct 2023

Viewed by 1318

Abstract

Coral diseases represent a prominent menace to coral reefs and to the associated ecological services they provide to the surrounding coastal communities. Studies on diseases and compromised health conditions (CHCs) on hard corals in the Southwest Indian Ocean (SWIO) are scarce, and their [...] Read more.

Coral diseases represent a prominent menace to coral reefs and to the associated ecological services they provide to the surrounding coastal communities. Studies on diseases and compromised health conditions (CHCs) on hard corals in the Southwest Indian Ocean (SWIO) are scarce, and their consequences are often overlooked. This study aimed to establish the baseline prevalence of diseases and CHC of hard corals around Rodrigues Island. Coral disease and CHC prevalence were visually assessed using 2 m × 50 m belt transects at eight sites around the island. This is the first report of four coral diseases, namely White Plague (WP), White Syndrome (WS), Black Band (BB), and Growth Anomalies (GA), and two CHCs, two forms of Pink Pigmentation Responses (PPR)—Pink Patches (PP) and Pink Line Syndrome (PLS)—observed on six genera of hard corals from the island of Rodrigues. PP on Fungia (15.92 ± 5.65%), followed by the WS on Montipora (4.67 ± 3.72%) and GA on Gardineroseris (4.16 ± 4.16%), so far unreported from the SWIO, were the most prevalent around the island. The least prevalent disease was BB on Montipora (0.13 ± 0.13%). Although the overall disease and CHC prevalence for Rodrigues Island (0.98 ± 0.30%) were much lower than the surrounding islands in the SWIO, the observations of these diseases and CHCs on hard corals and relevant environmental parameters warrant further in-depth characterization to better inform coral reefs management and conservation actions. Full article

(This article belongs to the Special Issue Indo-Pacific Coral Diseases: Diversity, Impacts and Solutions)

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9 pages, 2088 KiB

Open AccessCommunication

The Complete Mitochondrial Genome of Glischropus bucephalus (Vespertilionidae; Chiroptera) Provides New Evidence for Pipistrellus Paraphyly

by Svetlana S. Zhukova, Anna S. Speranskaya, Alexandra A. Lisenkova and Sergei V. Kruskop

Diversity 2023, 15(10), 1085; https://doi.org/10.3390/d15101085 - 14 Oct 2023

Cited by 2 | Viewed by 918

Abstract

The Indochinese thick-thumbed bat, Glischropus bucephalus, was described in 2011, but its molecular genetics (and the genetics of the whole genus Glischropus) are still poorly studied. We defined and annotated the complete mitogenome of Glischropus bucephalus (Chiroptera: Vespertilionidae) from Vietnam. The [...] Read more.

The Indochinese thick-thumbed bat, Glischropus bucephalus, was described in 2011, but its molecular genetics (and the genetics of the whole genus Glischropus) are still poorly studied. We defined and annotated the complete mitogenome of Glischropus bucephalus (Chiroptera: Vespertilionidae) from Vietnam. The complete mitogenome is 17,023 bp in total length, which includes 13 complete protein-coding genes, 22 tRNA genes, 2 rRNA, and one non-coding region (the origin of replication). The nucleotide composition is 33.2% A, 29.7% T, 13.6% G, and 23.5% C. The mitochondrial protein-coding genes use the standard start codon (ATN), one complete stop codon (TAA), and two incomplete stop codons (TA- and T-). The phylogenetic analysis confirmed that the genus Glischropus belongs to the Pipistrellini tribe and revealed that Glischropus bucephalus is clustered with the “eastern” clade of Pipistrellus, supporting the paraphyletic nature of the latter genus. Full article

(This article belongs to the Section Animal Diversity)

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24 pages, 2676 KiB

Open AccessArticle

The Molecular Evidence for Invasive Climber Echinocystis lobata (Michx.) Torr. & A. Gray in Eastern and Central Europe

by Lina Jocienė, Edvina Krokaitė, Tomas Rekašius, Erika Juškaitytė, Irina Ielciu, Olga Galanina and Eugenija Kupčinskienė

Diversity 2023, 15(10), 1084; https://doi.org/10.3390/d15101084 - 13 Oct 2023

Viewed by 821

Abstract

The climbing cucurbit Echinocystis lobata, native to North America and alien to many European countries, was assessed for its genetic diversity and differentiation across its introduced range of populations by applying markers of amplified fragment length polymorphism (AFLP). Various tests, including an [...] Read more.

The climbing cucurbit Echinocystis lobata, native to North America and alien to many European countries, was assessed for its genetic diversity and differentiation across its introduced range of populations by applying markers of amplified fragment length polymorphism (AFLP). Various tests, including an evaluation of the intrapopulation diversity, principal coordinate, and molecular variance analyses, showed that the Central and Eastern European populations differing in geography and arrival history are also distinct in the genetic parameters. Genetic diversity, defined as the percentage of polymorphic AFLP loci, ranged within 28–62% (on average 51%) at the regional scale (in Romanian, Baltic State, and Central Russian populations), and was very similar to this parameter at the local scale (on average 52% for Lithuanian populations). The differentiation was significant among the populations of the regions (Ф = 0.125, p = 0.001) and at the local scale (among the Lithuanian populations of the different river basins, Ф = 0.058, p = 0.010). The Bayesian results suggested the presence of three genetic clusters among the 29 sites, with populations from Romania, Latvia, Estonia, and the northern part of Lithuania comprising one prevailing cluster, populations from the Nemunas river basin of Lithuania comprising either the former mentioned cluster or the second cluster, and populations of Central Russia comprising the third genetic cluster. Overall, E. lobata in Europe has probably originated from multiple introductions. The intentional anthropogenic seed dispersal by marketing accompanied by hydrochory might have an impact on such a profile of genetic clusters. Full article

(This article belongs to the Section Plant Diversity)

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16 pages, 10335 KiB

Open AccessArticle

Effects of Stand Structure of Artificial Shelter Forest on Understory Herb Diversity in Desert-Oasis Ecotone

by Yan Yang, Zhengli Zhou, Liuji Shen, Yachong Zhao, Yuansheng Tang and Jiahe Tian

Diversity 2023, 15(10), 1083; https://doi.org/10.3390/d15101083 - 13 Oct 2023

Viewed by 932

Abstract

The relationship between the spatial structure of shelter forests and the diversity of understory herbaceous plants in desert–oasis ecotones is important for maintaining biodiversity indices and protecting the oasis ecosystem. In this paper, we explore the coupling relationship between tree layer structure (competition [...] Read more.

The relationship between the spatial structure of shelter forests and the diversity of understory herbaceous plants in desert–oasis ecotones is important for maintaining biodiversity indices and protecting the oasis ecosystem. In this paper, we explore the coupling relationship between tree layer structure (competition index, angle scale, neighborhood comparison, DBH, etc.) and understory herb diversity in the transition zone of shelter forest plots near oases and near deserts; in addition, we also aim to elucidate the dominant stand structure factors affecting herb biodiversity. The results indicated the following: A total of 13 herbaceous plant species were discovered in the transitional zone, with 11 species found near the oasis area and 4 species near the desert region. The Shannon, Simpson, and Pielou indices of understory herbaceous plants were significantly higher near the oasis area compared to the desert region. The Margalef index mean was higher in the oasis area compared to the desert region. Pearson and canonical correlation analyses revealed significant associations between specific stand structure indicators and diversity in the herbaceous layer. The results of the multiple linear regression analysis revealed that the competition index had a significant impact on the Shannon, Simpson, and Pielou diversity indices of the herbaceous layer in the understory of the shelterbelt forest near the oasis, with corresponding impact coefficients of 0.911, 0.936, and 0.831, respectively. The mingling degree was found to be the primary influencing factor for the Margalef index, with an impact coefficient of 0.825. However, in the understory of the shelterbelt forest near the desert, the neighborhood comparison ratio negatively affected the Shannon and Margalef indices, with impact coefficients of −0.634 and −0.736, respectively. Additionally, tree height negatively impacted the Simpson and Pielou indices, with impact coefficients of −0.645 and −0.677, respectively. In order to enhance the diversity of understory herbaceous species in the transitional zone and preserve the ecological system of the oasis, specific modifications to the forest structure and arrangement are essential. Pruning and thinning are necessary for shelterbelt forests located near desert regions, while shelterbelt forests near oases should use a suitable mix of tree species. These measures can help preserve or enhance the diversity of understory herbaceous plants. Full article

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21 pages, 1690 KiB

Open AccessEditor’s ChoiceArticle

Changing Trends in Cetacean Strandings in the East China Sea: Identifying Relevant Variables and Implications for Conservation and Management

by Shaobo Yang, Shengfa Li, Yan Jin and Zunlei Liu

Diversity 2023, 15(10), 1082; https://doi.org/10.3390/d15101082 - 13 Oct 2023

Cited by 1 | Viewed by 1433

Abstract

The frequency of cetacean strandings is increasing, with multiple causes identified. We examined temporal and spatial trends in stranding numbers along the coastal areas of the East China Sea from 1990 to 2021. Using structural equation models, we analyzed the relationships between strandings [...] Read more.

The frequency of cetacean strandings is increasing, with multiple causes identified. We examined temporal and spatial trends in stranding numbers along the coastal areas of the East China Sea from 1990 to 2021. Using structural equation models, we analyzed the relationships between strandings and climate, oceanic properties, and human activities. Our findings revealed time-dependent interannual variability in strandings but no linear trend, indicating relative stability in cetacean strandings. Seasonal patterns were observed only in narrow-ridged finless porpoises (Neophocaena asiaeorientalis), with significant spring increases (March to May). Clustering of strandings occurred in central Fujian and northern/southern Taiwan, according to spatial analysis. The impact of variables on cetacean strandings varied across time periods. Storm surges, coastal fishing, and the Pacific decadal oscillation were associated with stranding events from 1990 to 2006. However, from 2006 to 2021, the influence of storm surges weakened, while the climate index only indirectly affected strandings through sea surface temperature and salinity, with an increased intensity in the effects of winter sea surface temperature and salinity. Structural equation models unveiled the cascading effects of environmental changes on strandings. This study reports changing trends in cetacean strandings and identifies relevant variables. Although not exhaustive, understanding the reasons behind strandings enhances our comprehension of cetacean responses to environmental changes, supporting targeted conservation and management efforts. Full article

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18 pages, 4271 KiB

Open AccessArticle

Diversity of Indicator and Dominant Plant Species along Elevation Gradients in Prince Mohammad Bin Salman Nature Reserve, KSA

by Dhafer A. Al-Bakre

Diversity 2023, 15(10), 1081; https://doi.org/10.3390/d15101081 - 12 Oct 2023

Viewed by 1198

Abstract

It is essential to protect and preserve biodiversity, especially in habitats in which natural resources are scarce. The differing flora and vegetation distribution on the broad, arid landscape at the Crown Prince Mohammed Bin Salman Nature Reserve has yet to be investigated. Based [...] Read more.

It is essential to protect and preserve biodiversity, especially in habitats in which natural resources are scarce. The differing flora and vegetation distribution on the broad, arid landscape at the Crown Prince Mohammed Bin Salman Nature Reserve has yet to be investigated. Based on GPS coordination and the transitional zone of plant communities, 48 symmetric plots of 50 × 50 m² were distributed evenly over six elevations. In this study, we recorded 70 species in 33 families and elucidated floristic traits correlated with elevation. High species richness was recorded for the families Fabaceae, Poaceae, Asteraceae, and Chenopodiaceae. High numbers of chamaephyte and phanerophyte species were observed. In the chorotype, the mono-regional component contained 47% of the species, the bi-regional component 35.7%, and multi-regional and worldwide species comprised 10% and 7%, respectively. This study noted the growth habits of 23 herbs, 15 shrubs, 10 trees, and a single species of grass, vine, climber, and mistletoe. Diversity indices, indicator species, dominant plant communities, and soil profiles were compared for the defined zones of elevation. Alpha and beta diversity were high at elevations of ≥1000, 800, and ≤100 ma.s.l., compared to elevations of 600 m, 400 m, and 200 m. The highest species richness and species turnover were recorded at elevations of ≥1000, 800, and ≤100 m, while species evenness was greater at elevations of 600, 400, and 200 m. Vegetation analyses and indicator species (based on relative abundance) showed species variation with elevation. Species domination was influenced by physical soil structure and soil chemistry. Microclimates, including temperature and relative humidity variations, were found to be a significant driver in the ecosystem, resulting in varying plant diversity and species distribution at different elevations. Through canonical correspondence analysis (CCA), we used an autocorrelation of elevations, plant species, and soil properties to identify three phytogeographic categories that were presumed to be a proxy of microclimate change: Category I: elevations 1000 m and 800 m, including Retama raetam, Zilla Spinosa, and Vachellia gerrardii linked with sandy soil; Category II: elevations 600 m and 400 m, including species Haloxylon salicornicum, Rhazya stricta, and Leptadenia pyrotechnica linked with enriched soils containing CaCO₃ and HCO₃ and having a clay texture; and Category III: elevations 200 m and 100 m, including Zygophyllum coccineum, Tamarix nilotica, and Hyphaene thebaica, which thrived in salinity and silt soils. The spatial vegetation patterns of the xeric environment and its transition zones in Prince Mohammed Bin Salman Nature Reserve were also documented. It is recommended that microclimate effects on species nominated for vegetation restoration or afforestation be considered for the optimal management of this important nature reserve. Full article

(This article belongs to the Special Issue Climate Change: Vegetation Diversity Monitoring)

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21 pages, 6123 KiB

Open AccessArticle

Diversity of Cyanobacteria and Algae in Biological Soil Crusts of the Northern Ural Mountain Region Assessed through Morphological and Metabarcoding Approaches

by Elena Patova, Irina Novakovskaya, Evgeniy Gusev and Nikita Martynenko

Diversity 2023, 15(10), 1080; https://doi.org/10.3390/d15101080 - 12 Oct 2023

Cited by 2 | Viewed by 1348

Abstract

In mountain regions, biological soil crusts (BSCs) provide essential ecological services by being involved in primary production and nitrogen fixation. Eukaryotic algae and cyanobacteria are important photosynthetic components of these unique cryptogamic communities. Here, we present an overview of the eukaryotic and prokaryotic [...] Read more.

In mountain regions, biological soil crusts (BSCs) provide essential ecological services by being involved in primary production and nitrogen fixation. Eukaryotic algae and cyanobacteria are important photosynthetic components of these unique cryptogamic communities. Here, we present an overview of the eukaryotic and prokaryotic diversity of such phototrophs in BSCs in the mountain tundra of the northern Ural Mountains. Such assessment is based on morphological surveys and the first metabarcoding analysis in the region. In total, 166 taxa of Cyanobacteria and 256 eukaryotic algae (including Euglenophyta, Ochrophyta, Dinophyta, Bacillariophyta, Chlorophyta, and Charophyta) were identified. For the first time, 86 taxa new to the BSCs of the high-mountain belt of the region were discovered. Considering species composition, Cyanobacteria and Chlorophyta are the most abundant taxa in all the analyzed BSCs. The genera Nostoc, Coccomyxa, Chlamydomonas, Leptolyngbya, Stenomitos, Pycnacronema, Stigonema, and Eunotia had the highest number of taxonomic units. These groups shape the structure, function, and ecology of the BSC communities in the studied region. Our results show that BSCs in the tundras of the Ural Mountains have a high active and passive biodiversity of terrestrial cyanobacteria and algae. Both implemented methods resulted in similar results with a comparable number of algae and cyanobacteria species per sample. Metabarcoding could be implemented in future in the region to accurately screen photosynthetic organisms in BSCs. Full article

(This article belongs to the Special Issue Biodiversity and Biogeography of Terrestrial Algae and Cyanobacteria)

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6 pages, 212 KiB

Open AccessCommunication

Evaluating Formic Acid as a Behavioral Modifier in African Savanna Elephants

by Mark G. Wright, Irene Gatti, Michelle G. Au, Juliana Salehi, Craig R. Spencer, Paul Allin and Agenor Mafra-Neto

Diversity 2023, 15(10), 1079; https://doi.org/10.3390/d15101079 - 12 Oct 2023

Viewed by 1000

Abstract

Formic acid was investigated as a potential repellant for African savanna elephants (Loxodonta africana) as a semiochemical option for managing elephant movements and interactions with human infrastructure. Formic acid is a naturally occurring compound, used as an alarm pheromone and as [...] Read more.

Formic acid was investigated as a potential repellant for African savanna elephants (Loxodonta africana) as a semiochemical option for managing elephant movements and interactions with human infrastructure. Formic acid is a naturally occurring compound, used as an alarm pheromone and as a defensive chemical in Formicine ants, and thus a potentially desirable option compared to introducing exogenous deterrents that are foreign to the elephants’ natural habitats. Although most elephants observed (85%) did not interact with treatments containing formic acid, of the cohort of individuals (n = 38) that did respond, the majority showed a mild to moderate avoidance response, while a small proportion of elephants were distinctly repelled when experiencing formic acid cues, in some cases causing whole herds to evacuate an area. The potential for using formic acid as an elephant repellant to modulate elephant behavior in field situations is discussed. Full article

(This article belongs to the Special Issue Elephants: Moving from Conflict to Coexistence with People-2nd Edition)

7 pages, 1370 KiB

Open AccessEditorial

Forest Management and Biodiversity Conservation: Introduction to the Special Issue

by Lucian Dinca and Miglena Zhiyanski

Diversity 2023, 15(10), 1078; https://doi.org/10.3390/d15101078 - 11 Oct 2023

Viewed by 1284

Abstract

Forest ecosystems contribute to human wellbeing and the economy through the complex ecosystem services they provide [...] Full article

(This article belongs to the Special Issue Forest Management and Biodiversity Conservation)

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13 pages, 2133 KiB

Open AccessArticle

Diversity Phenomenon of the Danaceinae Malachite Beetle Subfamily (Coleoptera: Dasytidae) in Eocene Baltic Amber with a New Description of an Extinct Genus and Species

by Sergei E. Tshernyshev, Georgy Yu. Lyubarsky, Vitalii Alekseev and Andris Bukejs

Diversity 2023, 15(10), 1077; https://doi.org/10.3390/d15101077 - 11 Oct 2023

Viewed by 856

Abstract

A new malachite beetle, Baltamauroania mirabilicornis gen. et sp. nov., belonging to the tribe Amauroniodini (Coleoptera: Dasytidae) embedded in Eocene Baltic amber is described and illustrated. The new genus differs from the congeners of the tribe Amauroniodini in possessing a black, elongated, and subparallel [...] Read more.

A new malachite beetle, Baltamauroania mirabilicornis gen. et sp. nov., belonging to the tribe Amauroniodini (Coleoptera: Dasytidae) embedded in Eocene Baltic amber is described and illustrated. The new genus differs from the congeners of the tribe Amauroniodini in possessing a black, elongated, and subparallel body and a pronotum with scalloped lateral sides; long and 11-segmented antennae, with three apical antennomeres enlarged and forming a ‘club’ shape, with cylindrical antennomere 1; tarsi shortened and compressed, 5-segmented, with tarsomeres 1 and 2 equal in length, and tarsomere 5 the longest in all legs; pubescence of the dorsal surface consisting of short strong brown semi-erect and fine adpressed setae; punctation of dorsal surface irregular, elytra lacking grooves; pronotum almost equilateral, slightly elongated, with acute anterior and obtuse posterior angles, with wide margination of basal side and with scalloped and finely margined lateral sides; lateral edges of pronotum weakly rounded, with obtuse protuberance before middle. This is the second extinct genus and third record of the subfamily Danaceinae found in Eocene amber. The fossil records of the family Dasytidae are discussed. Three recent records of different Amauroniodini taxa from Eocene East European amber (Baltic and Rovno) show there to have been a high Danaceinae biodiversity in both the southern coast of the Subparatethys (documented by Rovno amber) and in its northern coast (documented by Baltic amber). The phenomenon of Danaceinae diversity in the Eocene Epoch is discussed. Full article

(This article belongs to the Special Issue Diversity of Fossil and Recent Insect Faunae)

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26 pages, 10263 KiB

Open AccessArticle

Tham Chiang Dao: A Hotspot of Subterranean Biodiversity in Northern Thailand

by Louis Deharveng, Martin Ellis, Anne Bedos and Sopark Jantarit

Diversity 2023, 15(10), 1076; https://doi.org/10.3390/d15101076 - 11 Oct 2023

Cited by 3 | Viewed by 1653

Abstract

The Doi Chiang Dao massif, which became a UNESCO Biosphere Reserve in 2021, is the highest karst mountain in Thailand. Tham Chiang Dao cave is located at the foot of this massif and is among the best-known caves in Thailand, having been visited [...] Read more.

The Doi Chiang Dao massif, which became a UNESCO Biosphere Reserve in 2021, is the highest karst mountain in Thailand. Tham Chiang Dao cave is located at the foot of this massif and is among the best-known caves in Thailand, having been visited since prehistoric times, and being a sacred place for the local Shan and Thai people. The cave consists of five main interconnected passages with a total length of 5342 m which ranks it as the 11th longest cave in Thailand. Tham Chiang Dao is the best studied cave in Thailand with a long series of explorations, investigations and zoological collecting. Here, we summarize the 110 years of biological exploration and investigation devoted to this cave. A total of 149 taxa have been recognized in Tham Chiang Dao, of which 61 have been identified to species level. The cave is the type locality for 14 species. The obligate subterranean fauna includes 37 species, of which 33 are troglobionts and 4 are stygobionts. Conservation issues are addressed in the discussion. This work is intended to provide a reference for the knowledge of cave fauna of the Chiang Dao Wildlife Sanctuary and a tool for its management by the local cave management committee, the National Cave Management Policy Committee, and the Department of Mineral Resources. It also documents the biological importance of Tham Chiang Dao in the Doi Chiang Dao UNESCO Biosphere Reserve. Full article

(This article belongs to the Special Issue Hotspots of Subterranean Biodiversity—2nd Volume)

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11 pages, 1174 KiB

Open AccessArticle

Population Structure of an African Cycad: Fire May Stimulate the Coning Phenology of Encephalartos lanatus (Zamiaceae) and Also Predispose Its Cones to Damage

by Memory N. Sigasa, Kowiyou Yessoufou, Anathi Magadlela, Wilfred Otang-Mbeng and Terence N. Suinyuy

Diversity 2023, 15(10), 1075; https://doi.org/10.3390/d15101075 - 10 Oct 2023

Viewed by 1118

Abstract

Cycads are the most threatened group in the plant kingdom. Fire is identified as one of the major factors heightening cycad extinction risk. However, compared to South American cycads, we know little about how fire negatively affects the demography of African cycads. Here, [...] Read more.

Cycads are the most threatened group in the plant kingdom. Fire is identified as one of the major factors heightening cycad extinction risk. However, compared to South American cycads, we know little about how fire negatively affects the demography of African cycads. Here, we collected a snapshot of demographic data on the largest known population of South Africa’s cycad species, Encephalartos lanatus, in unburnt and regularly burnt habitats. We fitted several statistical models to investigate the effects of fire on the population structure of E. lanatus. First, we found that the population follows a ‘J’ structure with more adults than any other life stage. Contrary to popular belief, this ‘J’ structure may not necessarily imply the future of the population is at risk, given that E. lanatus is a long-lived species. Second, we found that the abundance of adults explains 25% of the abundance of seedlings but does not predict the abundance of suckers, perhaps suggesting the adults ensure preferential seedling rather than clonal recruitment. Third, irrespective of life stages, the subpopulation in fire-prone habitats is, in term of size, proportionately lower than the subpopulation in unburnt areas, suggesting that fire may negatively affect the dynamic of the population. However, fire is not linked to differences in sex ratio across the population; not only do fire-prone subpopulations have more cones, but they also tend to have more damaged cones than unburnt populations. Overall, although we raised some limitations of the present study, we also inferred that fire may shape the observed ‘J’ structure of the population of E. lanatus, but, contrary to traditional belief, the ‘J’ structure is not enough to raise concern about the future of the population. A population dynamics study is required to determine if the future of the population is at risk. Full article

(This article belongs to the Topic Diversity and Conservation of Flora in Africa)

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