Poultry Pathogens and Poultry Diseases

A special issue of Microorganisms (ISSN 2076-2607). This special issue belongs to the section "Veterinary Microbiology".

Deadline for manuscript submissions: closed (31 March 2024) | Viewed by 10079

Special Issue Editors


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Guest Editor
Key Laboratory of Zoonosis Research, Ministry of Education, College of Veterinary Medicine, Jilin University, Xi’an Road 5333, Changchun 130062, China
Interests: poultry diseases; avian viruses; newcastle disease virus; avian influenza virus; emerging avian pathogens

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Guest Editor
Department for Avian Diseases, Faculty of Veterinary Medicine—Skopje, Ss. Cyril and Methodius University in Skopje, Lazar Pop Trajkov 5–7, 1000 Skopje, North Macedonia
Interests: avian viruses and diseases; molecular epidemiology; host-pathogen interaction

Special Issue Information

Dear Colleagues,

Based on the number of animals, poultry represents the largest domestic animal stock in the world, and poultry eggs and meat supply affordable high-quality protein. Poultry husbandry, especially on a small scale, is efficient and renewable and can provide a ready source of nutrition and income. However, poultry diseases caused by various strains of pathogens, such as avian influenza, Newcastle disease, Salmonellosis, and parasitic and fungal pathogens, can cause significant economic losses and even lead to life-threatening disease in animals and humans. Therefore, understanding poultry pathogens and effective strategies for preventing and controlling avian diseases are critical to protecting animals and people.

Poultry diseases, being very complex in nature, are a constant threat to poultry health and production. They can have transboundary characteristics, i.e., they can easily spread across borders by different routes (wild birds, trade, fomites) and can have a high socio-economic impact affecting livelihoods in both poor and rich countries. Some pathogens are zoonotic and therefore have pandemic potential. Because of their importance, major poultry diseases are listed by the World Organization for Animal Health. The detection of these diseases in a country, region, or continent will require the implementation of compulsory control measures, which highly affect the poultry industry. Due to high mortality and decreases in production (eggs and meat), they cause huge economic losses for poultry producers, thus impeding the trade and market of food of animal origin. To alleviate the detrimental effects, highly focused research is needed.

The Special Issue, entitled "Poultry Pathogens and Poultry Diseases", aims to increase our knowledge by sharing the latest research in these areas. Its focal points include, but are not limited to, the following:

  • Works on avian diseases relevant to etiology, pathogenesis, diagnosis, treatment, and control; 
  • Basic or clinical research on poultry pathogens and avian diseases from various disciplines including microbiology, immunology, pathology, and epidemiology including molecular epidemiology and phylogenetic relationships as well as host–pathogen interaction;
  • Zoonotic pathogen and disease spread between poultry and people;
  • Reemerging and emerging infectious poultry pathogens and diseases.

Reviews, original research articles, and short communications are welcome for submission.

Prof. Dr. Renfu Yin
Dr. Aleksandar Dodovski
Guest Editors

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Published Papers (8 papers)

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Research

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15 pages, 9002 KiB  
Article
Synergy of Subgroup J Avian Leukosis Virus and Chicken Infectious Anemia Virus Enhances the Pathogenicity in Chickens
by Huijuan Xu, Wenxue Li, Yu Nie, Sheng Chen, Hongxin Li, Xinheng Zhang, Qingmei Xie and Weiguo Chen
Microorganisms 2024, 12(4), 740; https://doi.org/10.3390/microorganisms12040740 - 05 Apr 2024
Viewed by 464
Abstract
Subgroup J avian leukemia virus (ALV-J) and chicken infectious anemia virus (CIAV) are widely acknowledged as significant immunosuppressive pathogens that commonly co-infect chickens, causing substantial economic losses in the poultry industry. However, whether co-infection of ALV-J and CIAV have synergistic pathogenicity remains uncertain. [...] Read more.
Subgroup J avian leukemia virus (ALV-J) and chicken infectious anemia virus (CIAV) are widely acknowledged as significant immunosuppressive pathogens that commonly co-infect chickens, causing substantial economic losses in the poultry industry. However, whether co-infection of ALV-J and CIAV have synergistic pathogenicity remains uncertain. To explore their synergistic pathogenesis, we established a co-infection model of ALV-J and CIAV in HD11 cells and specific-pathogen-free (SPF) chickens. We discovered that ALV-J and CIAV can synergistically promote the secretion of IL-6, IL-10, IFN-α, and IFN-γ and apoptosis in HD11 cells. In vivo, compared to the ALV-J and CIAV mono-infected group, the mortality increased significantly by 27% (20 to 47%) and 14% (33 to 47%) in the co-infected group, respectively. We also discovered that ALV-J and CIAV synergistically inhibited weight gain and exhibited more severe organ damage in co-infected chickens. Furthermore, we found that CIAV can promote the replication of ALV-J in HD11 cells and significantly enhance ALV-J viral load in blood and tissues of co-infected chickens, but ALV-J cannot promote the replication of CIAV. Moreover, by measuring the immune organ indexes and proportions of blood CD3+CD4+ and CD3+CD8+ lymphocytes, more serious instances of immunosuppression were observed in ALV-J and CIAV co-infected chickens than in mono-infected chickens. Taken together, our findings demonstrate that ALV-J and CIAV synergistically enhance pathogenicity and immunosuppression. Full article
(This article belongs to the Special Issue Poultry Pathogens and Poultry Diseases)
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13 pages, 8585 KiB  
Article
Genetic Characterization, Pathogenicity, and Epidemiology Analysis of Three Sub-Genotype Pigeon Newcastle Disease Virus Strains in China
by Zeren Wang, Zhengyang Geng, Hongbo Zhou, Pengju Chen, Jing Qian and Aizhen Guo
Microorganisms 2024, 12(4), 738; https://doi.org/10.3390/microorganisms12040738 - 04 Apr 2024
Viewed by 548
Abstract
Pigeon Newcastle disease (ND) is a serious infectious illness caused by the pigeon Newcastle disease virus (NDV) or Paramyxovirus type 1 (PPMV-1). Genotype VI NDV is a primary factor in ND among Columbiformes (such as pigeons and doves). In a recent study, eight [...] Read more.
Pigeon Newcastle disease (ND) is a serious infectious illness caused by the pigeon Newcastle disease virus (NDV) or Paramyxovirus type 1 (PPMV-1). Genotype VI NDV is a primary factor in ND among Columbiformes (such as pigeons and doves). In a recent study, eight pigeon NDV strains were discovered in various provinces in China. These viruses exhibited mesogenic characteristics based on their MDT and ICPI values. The complete genome sequences of these eight strains showed a 90.40% to 99.19% identity match with reference strains of genotype VI, and a 77.86% to 80.45% identity match with the genotype II vaccine strain. Additionally, analysis of the F gene sequence revealed that these NDV strains were closely associated with sub-genotypes VI.2.2.2, VI.2.1.1.2.1, and VI.2.1.1.2.2. The amino acid sequence at the cleavage site of the F protein indicated virulent characteristics, with the sequences 112KRQKRF117 and 112RRQKRF117 observed. Pigeons infected with these sub-genotype strains had a low survival rate of only 20% to 30%, along with lesions in multiple tissues, highlighting the strong spread and high pathogenicity of these pigeon NDV strains. Molecular epidemiology data from the GenBank database revealed that sub-genotype VI.2.1.1.2.2 strains have been prevalent since 2011. In summary, the findings demonstrate that the prevalence of genotype VI NDV is due to strains from diverse sub-genotypes, with the sub-genotype VI.2.1.1.2.2 strain emerging as the current epidemic strain, highlighting the significance of monitoring pigeon NDV in China. Full article
(This article belongs to the Special Issue Poultry Pathogens and Poultry Diseases)
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10 pages, 1085 KiB  
Article
Surveillance of Avian Metapneumovirus in Non-Vaccinated Chickens and Co-Infection with Avian Pathogenic Escherichia coli
by Gleidson Biasi Carvalho Salles, Giulia Von Tönnemann Pilati, Beatriz Pereira Savi, Eduardo Correa Muniz, Mariane Dahmer, Josias Rodrigo Vogt, Antonio José de Lima Neto and Gislaine Fongaro
Microorganisms 2024, 12(1), 56; https://doi.org/10.3390/microorganisms12010056 - 28 Dec 2023
Viewed by 735
Abstract
Brazil is the second largest producer of broiler chicken in the world, and the surveillance of avian pathogens is of great importance for the global economy and nutrition. Avian metapneumovirus (aMPV) infection results in high rates of animal carcass losses due to aerosacculitis [...] Read more.
Brazil is the second largest producer of broiler chicken in the world, and the surveillance of avian pathogens is of great importance for the global economy and nutrition. Avian metapneumovirus (aMPV) infection results in high rates of animal carcass losses due to aerosacculitis and these impacts can be worsened through co-infection with pathogenic bacteria, particularly Escherichia coli (APEC). The present study evaluated the seroprevalence of the main aMPV subtypes in unvaccinated broiler chickens from poultry farms in Brazil, as well as the clinical effects of co-infection with APEC. Blood samples, respiratory swabs, femurs, liver, and spleen of post-mortem broiler chickens were collected from 100 poultry production batches, totaling 1000 samples. The selection of the production batch was based on the history of systemic and respiratory clinical signs. The results indicated that 20% of the lots showed serological evidence of the presence of aMPV, with two lots being positive for aMPV-B. A total of 45% of batches demonstrated co-infection between aMPV and APEC. The results point to the need for viral surveillance, targeted vaccination, and vaccination programs, which could reduce clinical problems and consequently reduce the use of antibiotics to treat bacterial co-infections. Full article
(This article belongs to the Special Issue Poultry Pathogens and Poultry Diseases)
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13 pages, 1798 KiB  
Article
The Genomic Characteristics of an Arthritis-Causing Salmonella pullorum
by Zhiyuan Lu, Jiaqi Huang, Peiyong Li, Mengze Song, Ben Liu, Wenli Tang and Shuhong Sun
Microorganisms 2023, 11(12), 2986; https://doi.org/10.3390/microorganisms11122986 - 14 Dec 2023
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Abstract
Salmonella enterica subsp. enterica serovar Gallinarum biovar pullorum (Salmonella pullorum) is an avian-specific pathogen that has caused considerable economic losses to the poultry industry. High endemicity, poor implementation of hygiene measures, and lack of effective vaccines hinder the prevention and control of [...] Read more.
Salmonella enterica subsp. enterica serovar Gallinarum biovar pullorum (Salmonella pullorum) is an avian-specific pathogen that has caused considerable economic losses to the poultry industry. High endemicity, poor implementation of hygiene measures, and lack of effective vaccines hinder the prevention and control of this disease in intensively maintained poultry flocks. In recent years, the incidence of arthritis in chicks caused by Salmonella pullorum infection has increased. In this study, four Salmonella pullorum strains were identified from the livers, spleens, and joint fluids of Qingjiaoma chicken breeders with arthritis clinical signs, and an arthritis model of chicks was successfully established using SP206-2. Whole genome sequencing of the SP206-2 strain showed that the genome was 4,730,579 bp, 52.16% GC content, and contained 5007 genes, including 4729 protein-coding regions. The genomic analysis of four arthritis-causing isolates and three diarrhea-causing isolates showed that the genome of arthritis-causing isolates was subject to nonsynonymous mutations, shift mutations, and gene copy deletions. An SNP phylogenetic tree analysis showed that arthritis-causing isolates are located in a different evolutionary branch from diarrhea-causing isolates. Further differential genes analysis showed that the genome of arthritis-causing isolates had missense mutations in genes related to substance metabolism and substance transport, as a result of adaptive evolution. Full article
(This article belongs to the Special Issue Poultry Pathogens and Poultry Diseases)
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14 pages, 2263 KiB  
Article
Prevalence and Molecular Characteristics of FAdV-4 from Indigenous Chicken Breeds in Yunnan Province, Southwestern China
by Jinyu Lai, Liangyu Yang, Fashun Chen, Xingchen He, Rongjie Zhang, Yong Zhao, Gan Gao, Weiwu Mu, Xi Chen, Shiyu Luo, Tao Ren and Bin Xiang
Microorganisms 2023, 11(11), 2631; https://doi.org/10.3390/microorganisms11112631 - 26 Oct 2023
Cited by 2 | Viewed by 903
Abstract
Fowl adenovirus-induced hepatitis–pericardial effusion syndrome outbreaks have been increasingly reported in China since 2015, resulting in substantial economic losses to the poultry industry. The genetic diversity of indigenous chicken results in different immune traits, affecting the evolution of these viruses. Although the molecular [...] Read more.
Fowl adenovirus-induced hepatitis–pericardial effusion syndrome outbreaks have been increasingly reported in China since 2015, resulting in substantial economic losses to the poultry industry. The genetic diversity of indigenous chicken results in different immune traits, affecting the evolution of these viruses. Although the molecular epidemiology of fowl adenovirus serotype 4 (FAdV-4) has been well studied in commercial broiler and layer chickens, the prevalence and genetic characteristics of FAdV-4 in indigenous chickens remain largely unknown. In this study, samples were collected from six indigenous chicken breeds in Yunnan province, China. FAdV-positive samples were identified in five of the six indigenous chicken populations via PCR and 10 isolates were obtained. All FAdVs belonged to serotype FAdV-4 and species FAdV-C. The hexon, fiber, and penton gene sequence comparison analysis demonstrated that the prevalence of FAdV-4 isolates in these chickens might have originated from other provinces that exported chicks and poultry products to Yunnan province. Moreover, several distinct amino acid mutations were firstly identified in the major structural proteins. Our findings highlighted the need to decrease inter-regional movements of live poultry to protect indigenous chicken genetic resources and that the immune traits of these indigenous chickens might result in new mutations of FAdV-4 strains. Full article
(This article belongs to the Special Issue Poultry Pathogens and Poultry Diseases)
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13 pages, 1810 KiB  
Article
Emergence and Persistent Circulation of Highly Pathogenic Avian Influenza Virus A (H5N8) in Kosovo, May 2021–May 2022
by Armend Cana, Bianca Zecchin, Xhavit Merovci, Alice Fusaro, Edoardo Giussani, Sadik Heta, Kiril Krstevski, Dafina Mehmetukaj, Izedin Goga, Beqe Hulaj, Bafti Murati, Calogero Terregino and Aleksandar Dodovski
Microorganisms 2023, 11(9), 2226; https://doi.org/10.3390/microorganisms11092226 - 02 Sep 2023
Cited by 1 | Viewed by 1608
Abstract
In this study, we report the first outbreak of highly pathogenic avian influenza (HPAI) A H5N8, clade 2.3.4.4b in Kosovo on 19 May 2021. The outbreak consisted of three phases: May–June 2021, September–November 2021, and January–May 2022. In total, 32 backyards and 10 [...] Read more.
In this study, we report the first outbreak of highly pathogenic avian influenza (HPAI) A H5N8, clade 2.3.4.4b in Kosovo on 19 May 2021. The outbreak consisted of three phases: May–June 2021, September–November 2021, and January–May 2022. In total, 32 backyards and 10 commercial holdings tested positive for the virus. Interestingly, the third and last phase of the outbreak coincided with the massive H5N1 clade 2.3.4.4b epidemic in Europe. Phylogenetic analyses of 28 viral strains from Kosovo revealed that they were closely related to the H5N8 clade 2.3.4.4.b viruses that had been circulating in Albania, Bulgaria, Croatia, Hungary, and Russia in early 2021. Whole genome sequencing of the 25 and partial sequencing of three H5N8 viruses from Kosovo showed high nucleotide identity, forming a distinctive cluster and suggesting a single introduction. The results of the network analysis were in accordance with the three epidemic waves and suggested that the viral diffusion could have been caused by secondary spreads among farms and/or different introductions of the same virus from wild birds. The persistent circulation of the same virus over a one-year period highlights the potential risk of the virus becoming endemic, especially in settings with non-adequate biosecurity. Full article
(This article belongs to the Special Issue Poultry Pathogens and Poultry Diseases)
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18 pages, 2437 KiB  
Article
Influenza A Virus in Pigs in Senegal and Risk Assessment of Avian Influenza Virus (AIV) Emergence and Transmission to Human
by Mamadou Malado Jallow, Mamadou Aliou Barry, Amary Fall, Ndiendé Koba Ndiaye, Davy Kiori, Sara Sy, Déborah Goudiaby, Mbayame Ndiaye Niang, Gamou Fall, Malick Fall and Ndongo Dia
Microorganisms 2023, 11(8), 1961; https://doi.org/10.3390/microorganisms11081961 - 31 Jul 2023
Cited by 1 | Viewed by 1742
Abstract
We conducted an active influenza surveillance in the single pig slaughterhouse in Dakar to investigate the epidemiology and genetic characteristics of influenza A viruses (IAVs) and to provide serologic evidence of avian influenza virus (AIV) infection in pigs at interfaces with human populations [...] Read more.
We conducted an active influenza surveillance in the single pig slaughterhouse in Dakar to investigate the epidemiology and genetic characteristics of influenza A viruses (IAVs) and to provide serologic evidence of avian influenza virus (AIV) infection in pigs at interfaces with human populations in Senegal. Nasal swab and blood samples were collected on a weekly basis from the same animal immediately after slaughter. Influenza A viruses were diagnosed using RT-qPCR and a subset of positive samples for H3 and H1 subtypes were selected for full genome amplification and NGS sequencing. Serum samples were tested by HI assay for the detection of antibodies recognizing four AIVs, including H9N2, H5N1, H7N7 and H5N2. Between September 2018 and December 2019, 1691 swine nasal swabs were collected and tested. Influenza A virus was detected in 30.7% (520/1691), and A/H1N1pdm09 virus was the most commonly identified subtype with 38.07% (198/520), followed by A/H1N2 (16.3%) and A/H3N2 (5.2%). Year-round influenza activity was noted in pigs, with the highest incidence between June and September. Phylogenetic analyses revealed that the IAVs were closely related to human IAV strains belonging to A/H1N1pdm09 and seasonal H3N2 lineages. Genetic analysis revealed that Senegalese strains possessed several key amino acid changes, including D204 and N241D in the receptor binding site, S31N in the M2 gene and P560S in the PA protein. Serological analyses revealed that 83.5% (95%CI = 81.6–85.3) of the 1636 sera tested were positive for the presence of antibodies against either H9N2, H5N1, H7N7 or H5N2. Influenza H7N7 (54.3%) and H9N2 (53.6%) were the dominant avian subtypes detected in Senegalese pigs. Given the co-circulation of multiple subtypes of influenza viruses among Senegalese pigs, the potential exists for the emergence of new hybrid viruses of unpredictable zoonotic and pandemic potential in the future. Full article
(This article belongs to the Special Issue Poultry Pathogens and Poultry Diseases)
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Review

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16 pages, 2148 KiB  
Review
Environmental Sampling Methods for Detection of Salmonella Infections in Laying Hens: A Systematic Review and Meta-Analysis
by Ewa Pacholewicz, Henk J. Wisselink, Miriam G. J. Koene, Marleen van der Most and Jose L. Gonzales
Microorganisms 2023, 11(8), 2100; https://doi.org/10.3390/microorganisms11082100 - 17 Aug 2023
Cited by 2 | Viewed by 1683
Abstract
Salmonellosis is the second most commonly reported foodborne gastrointestinal infection in humans in the European Union (EU). Most outbreaks are caused by Salmonella Enteritidis, present in contaminated food products, particularly in egg and egg products. In recent years, an increase in the prevalence [...] Read more.
Salmonellosis is the second most commonly reported foodborne gastrointestinal infection in humans in the European Union (EU). Most outbreaks are caused by Salmonella Enteritidis, present in contaminated food products, particularly in egg and egg products. In recent years, an increase in the prevalence of Salmonella in laying hen flocks in the EU has been observed. For the effective control of infection, adequate detection is key. In laying hen flocks, the occurrence of Salmonella in the EU is monitored by the culture of environmental samples (dust, faeces, and boot swabs). The performance of sampling procedures described in the literature for the detection of Salmonella in laying hens was reviewed. In total, 924 abstracts were screened, resulting in the selection of 87 abstracts and 18 publications for qualitative and quantitative analyses, respectively. Sample sizes and sampling locations of faecal material and dust were variable and poorly described. Microbiological culture methods used to detect Salmonella were variably described in the literature and were often incomplete. Overall, the available literature indicates higher sensitivity of environmental versus individual hen matrices and points to differences in sensitivity between environmental matrices. For non-cage housing systems, boot swabs are the preferred samples, while for cage housing systems dust might be a more reliable sample. Full article
(This article belongs to the Special Issue Poultry Pathogens and Poultry Diseases)
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