Metabolomics — Workflows, Methods and Applications

A special issue of Metabolites (ISSN 2218-1989). This special issue belongs to the section "Integrative Metabolomics".

Deadline for manuscript submissions: closed (1 February 2019) | Viewed by 4881

Special Issue Editors


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Guest Editor
Turku Centre for Biotechnology, University of Turku, Finland & School of Medical Sciences, Örebro University, 702 81 Örebro, Sweden
Interests: metabolomics; lipidomics; data processing; systems biology; computational biology

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Guest Editor
Department of Food Science, Aarhus University, 8000 Aarhus, Denmark
Interests: food science; foodomics; metabolomics; nuclear magnetic resonance; nutrition and health; muscle metabolism
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Guest Editor
Dept. Nutrition, Ecercise and Sports, University of Copenhagen, Copenhagen, Denmark
Interests: human studies; including dietary intervention studies; environmental studies and biobank-based cohort studies; life style disease

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Guest Editor
School of Science and Technology, Örebro University, 702 81 Örebro, Sweden
Interests: metabolomics; lipidomics; mass spectrometry; chromatography; analytical workflows for metabolomics; exposome analysis

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Guest Editor
Biology and Biological Engineering, Food and Nutrition Science, Chalmers University of Technology, Gothenburg, Sweden
Interests: dietary fibre; Epidemiology; metabolomics; Health; appetite; weight loss; whole grains; plant foods; RCTs; cardiometabolic outcomes; precision nutrition; molecular phenotyping

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Guest Editor
Department of Nutrition, Institute of Basic Medical Sciences, University of Oslo, Blindern, 0317 Oslo, Norway
Interests: nutrition; controlled dietary intervention studies; personalized nutrition; fatty acids and lipid metabolism; nordic, gene regulation

Special Issue Information

Dear Colleagues,

The 1st Nordic Metabolomics Conference is the inaugural annual meeting of the newly established Nordic Metabolomics Society. The conference aims to highlight and discuss the latest metabolomics research in the Nordic countries and abroad.

We welcome papers focused on metabolomics workflows, metabolite identification and quantification, metabolomics in nutrition, environmental and plant metabolomics, and particularly, but not exclusively, extended conference papers from the Nordic Metabolomics Conference 2018.

More information about the Nordic Metabolomics Conference 2018 can be found at: https://www.oru.se/NordicMetabolomicsConference

Prof. Dr. Matej Orešič
Prof. Dr. Hanne Christine Bertram
Prof. Dr. Lars Ove Dragsted
Prof. Dr. Tuulia Hyötyläinen
Prof. Dr. Rikard Landberg
Prof. Dr. Stine Marie Ulven
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Metabolites is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • metabolomics workflows
  • metabolite identification and quantification
  • modelling approaches
  • molecular physiology in health and disease
  • food and health
  • environmental and plant metabolomics

Published Papers (1 paper)

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11 pages, 210 KiB  
Concept Paper
A Tool to Encourage Minimum Reporting Guideline Uptake for Data Analysis in Metabolomics
by Elizabeth C. Considine and Reza M. Salek
Metabolites 2019, 9(3), 43; https://doi.org/10.3390/metabo9030043 - 05 Mar 2019
Cited by 20 | Viewed by 4239
Abstract
Despite the proposal of minimum reporting guidelines for metabolomics over a decade ago, reporting on the data analysis step in metabolomics studies has been shown to be unclear and incomplete. Major omissions and a lack of logical flow render the data analysis’ sections [...] Read more.
Despite the proposal of minimum reporting guidelines for metabolomics over a decade ago, reporting on the data analysis step in metabolomics studies has been shown to be unclear and incomplete. Major omissions and a lack of logical flow render the data analysis’ sections in metabolomics studies impossible to follow, and therefore replicate or even imitate. Here, we propose possible reasons why the original reporting guidelines have had poor adherence and present an approach to improve their uptake. We present in this paper an R markdown reporting template file that guides the production of text and generates workflow diagrams based on user input. This R Markdown template contains, as an example in this instance, a set of minimum information requirements specifically for the data pre-treatment and data analysis section of biomarker discovery metabolomics studies, (gleaned directly from the original proposed guidelines by Goodacre at al). These minimum requirements are presented in the format of a questionnaire checklist in an R markdown template file. The R Markdown reporting template proposed here can be presented as a starting point to encourage the data analysis section of a metabolomics manuscript to have a more logical presentation and to contain enough information to be understandable and reusable. The idea is that these guidelines would be open to user feedback, modification and updating by the metabolomics community via GitHub. Full article
(This article belongs to the Special Issue Metabolomics — Workflows, Methods and Applications)
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