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Plants
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Plant RNA Biology
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Plant RNA Biology

A special issue of Plants (ISSN 2223-7747). This special issue belongs to the section "Plant Molecular Biology".

Deadline for manuscript submissions: closed (31 October 2020) | Viewed by 3211

Special Issue Editor

Prof. Dr. Polydefkis Hatzopoulos

E-Mail Website
Guest Editor
Department of Biotechnology, Agricultural University of Athens, 11855 Athens, Greece
Interests: plant biotechnology; plant molecular biology
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

Technological advancements in the recent years have produced a number of critical scientific achievements about RNA Biology. The intermediate role of the RNA in the molecular biology dogma is just a narrow activity of the RNA. Traditional issues of protein regulatory components have been replaced by RNA molecules. Dynamic, developmental and functional activities of a cell could be extrapolated by single-cell RNA sequencing. Moreover, RNA is usually a target of biotechnological approaches. The perplexed activities of an RNA could be appreciated in a wide range of endeavors from chromatin architecture to RNA transport in neighboring cell. 

A demand for interdisciplinary discussion to solve the complex issues associated with Plant RNA Biology has encouraged of a novel discussion platform and why not to prepare a conventional conference. Open-access journals bring the latest research outcomes to a broad range of readers. This special issue can be a collection of otherwise dispersed information and enhance intensive discussion on Plant RNA Biology. This Special Issue will accept papers from a broad scope of interdisciplinary research on plant RNA Biology, ranging from basic molecular biology to biotechnology. Structural and posttrancriptional studies in this area fall within the scope. Original research papers, reviews and perspectives are also welcome. 

Prof. Dr. Polydefkis Hatzopoulos
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Plants is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • Chloroplast group-ii intron splicing
  • Mito group-ii intron splicing
  • Chloroplast RNA editing
  • Mito RNA editing
  • RNA transcription/RNA polymerases
  • RNA splicing
  • RNA alternative splicing
  • RNA maturation
  • RNA translation
  • Retrograde/anterograde signaling from RNA processing
  • RNAi
  • Plant microRNAs
  • Plant lncRNA
  • splicing and development/flowering/light etc
  • nonsense mediated RNA decay (NMD)
  • RNA structure
  • Algae Chloroplast/mito RNA processes
  • Plant tRNAs

Published Papers (1 paper)

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Research

15 pages, 3029 KiB  
Article
Preferential Ribosome Loading on the Stress-Upregulated mRNA Pool Shapes the Selective Translation under Stress Conditions
by Yan Chen, Min Liu and Zhicheng Dong
Plants 2021, 10(2), 304; https://doi.org/10.3390/plants10020304 - 5 Feb 2021
Cited by 7 | Viewed by 2697
Abstract
The reprogramming of gene expression is one of the key responses to environmental stimuli, whereas changes in mRNA do not necessarily bring forth corresponding changes of the protein, which seems partially due to the stress-induced selective translation. To address this issue, we systematically [...] Read more.
The reprogramming of gene expression is one of the key responses to environmental stimuli, whereas changes in mRNA do not necessarily bring forth corresponding changes of the protein, which seems partially due to the stress-induced selective translation. To address this issue, we systematically compared the transcriptome and translatome using self-produced and publicly available datasets to decipher how and to what extent the coordination and discordance between transcription and translation came to be in response to wounding (self-produced), dark to light transition, heat, hypoxia, Pi starvation and the pathogen-associated molecular pattern (elf18) in Arabidopsis. We found that changes in total mRNAs (transcriptome) and ribosome-protected fragments (translatome) are highly correlated upon dark to light transition or heat stress. However, this close correlation was generally lost under other four stresses analyzed in this study, especially during immune response, which suggests that transcription and translation are differentially coordinated under distinct stress conditions. Moreover, Gene Ontology (GO) enrichment analysis showed that typical stress responsive genes were upregulated at both transcriptional and translational levels, while non-stress-specific responsive genes were changed solely at either level or downregulated at both levels. Taking wounding responsive genes for example, typical stress responsive genes are generally involved in functional categories related to dealing with the deleterious effects caused by the imposed wounding stress, such as response to wounding, response to water deprivation and response to jasmonic acid, whereas non-stress-specific responsive genes are often enriched in functional categories like S-glycoside biosynthetic process, photosynthesis and DNA-templated transcription. Collectively, our results revealed the differential as well as targeted coordination between transcriptome and translatome in response to diverse stresses, thus suggesting a potential model wherein preferential ribosome loading onto the stress-upregulated mRNA pool could be a pacing factor for selective translation. Full article
(This article belongs to the Special Issue Plant RNA Biology)
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