Clays and the Origin of Life

A special issue of Life (ISSN 2075-1729). This special issue belongs to the section "Origin of Life".

Deadline for manuscript submissions: closed (15 September 2020) | Viewed by 9682

Special Issue Editor


E-Mail Website
Guest Editor
Department of Earth Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA, USA
Interests: clay; the origin life; gene regulation; gene expression; genomics; bioinformatics and computational biology; molecular biology; evolution; DNA; biochemistry; proteins; RNA

Special Issue Information

Dear Colleagues,

We are going to explore the Clay world and the Origin of Life in this Special Issue.

Freeman Dyson in his book on the Origins of Life pointed out that there were three main theories of life, labelled by their most prominent advocates: Oparin (peptides), Eigen (RNA), and Cairns-Smith (Clays). The first two theories are dependent on a soup of monomers, e.g., amino acids and nucleotides. The Clay model did not; therefore, Clays evolved up to Metabolism.

In the modern debate between Metabolism first versus the RNA world, the origin and evolution of Metabolism is argued to clearly precede the appearance of the RNA world.

This means that no soup was necessary in the Clay world. It was on the surfaces of iron minerals (Clays) where the fixation of CO2 and N2 occurred. Resulting in carboxylic acids, amino acids, sugars and bases etc.

It is on the carbonaceous chondrites that the coupling between the synthesis of iron-rich clays and the synthesis of amino acids, monocarboxylic acids, and dicarboxylic acids took place. This coupling has been recently been tested experimentally, when dicarboxylic acids catalyzed clay formation from gels.

The evolution of metabolism requires a memory system and that was provided by the replicating iron-rich clays. These iron-rich clays have been observed on Mars.

Clays are excellent catalysts in Organic Chemistry and have been extensively studied. They have been studied in the polymerization of RNA and peptides. The redox reactions on the surface of iron-rich clays have not been studied (Laszlo, P. Chemical reactions on clays. Science 1987, 235, 1473).

Clays can replicate:

Formation of clay minerals in soils from soluble and colloidal products is believed to be catalyzed by the other aluminosilicate minerals of the soil through the adsorption of these products on their surfaces. The surfaces of the existing clay minerals or of primary minerals may be considered as nuclei that initiate the crystallization process. Crystal lattice growth may be said to begin when only a few silica tetrahedrons are adsorbed on an OH surface of a kaolinite particle or a few molecules of alumina are adsorbed on an oxygen surface of a mica; a montmorin; or a kaolin particle. These adsorbed molecules would tend to become oriented in a pattern similar or complementary to that of the substrate and become condensed through dehydration into two-dimensional sheets of linked tetrahedrons or octahedrons.

Barshad, I. Chapter on Soil Development. Chemistry of Soils; Baer, F.E. Ed.; Reinhold Publishing Corporation: New York, N.Y., USA, 1955; p31.

In summary, Clays are catalysts and can replicate. They evolved up to Metabolism and thus the Origin of Life began in the Clay world and not in the RNA world. The origin of the Genetic Code was a later development.

This Special Issue is an update on Clays and the Origin of Life.

In 1982, with the help of John Lewis, I founded the Gordon Conference on the Origins of Life. It was followed by a meeting in Glasgow that resulted in the book that I edited with Cairns-Smith: Clay Minerals and the Origin of Life; Cairns-Smith, A.G., Hartman, H. Eds.; Cambridge University Press: Cambridge, UK, 1986.

More recent publications include:

Hartman, H. From clay to the code of life. In Sidney Brenner’s 10-on-10: The Chronicles of Evolution; Wildtype Books: Singapore, 2018.

Hartman, H.; Smith, T.F. Origin of the Genetic Code is Found at the Transition between a Thioester World of Peptides and the Phosphoester World of Polynucleotides. Life 2019, 9, 69.

Dr. Hyman Hartman
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Life is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2600 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • clays
  • metabolism
  • clays and the origin of life

Published Papers (2 papers)

Order results
Result details
Select all
Export citation of selected articles as:

Research

Jump to: Review

13 pages, 2562 KiB  
Article
pH-Dependent Adsorption of Peptides on Montmorillonite for Resisting UV Irradiation
by Rongcan Lin, Yueqiao Wang, Xin Li, Yan Liu and Yufen Zhao
Life 2020, 10(4), 45; https://doi.org/10.3390/life10040045 - 20 Apr 2020
Cited by 6 | Viewed by 2880
Abstract
Ultraviolet (UV) irradiation is considered an energy source for the prebiotic chemical synthesis of life’s building blocks. However, it also results in photodegradation of biology-related organic compounds on early Earth. Thus, it is important to find a process to protect these compounds from [...] Read more.
Ultraviolet (UV) irradiation is considered an energy source for the prebiotic chemical synthesis of life’s building blocks. However, it also results in photodegradation of biology-related organic compounds on early Earth. Thus, it is important to find a process to protect these compounds from decomposition by UV irradiation. Herein, pH effects on both the adsorption of peptides on montmorillonite (MMT) and the abilities of peptides to resist UV irradiation due to this adsorption were systematically studied. We found that montmorillonite (MMT) can adsorb peptides effectively under acidic conditions, while MMT-adsorbed peptides can be released under basic conditions. Peptide adsorption is positively correlated with the length of the peptide chains. MMT’s adsorption of peptides and MMT-adsorbed peptide desorption are both rapid-equilibrium, and it takes less than 30 min to reach the equilibrium in both cases. Furthermore, compared to free peptides, MMT-adsorbed peptides under acidic conditions are well protected from UV degradation even after prolonged irradiation. These results indicate amino acid/peptides are able to concentrate from aqueous solution by MMT adsorption under low-pH conditions (concentration step). The MMT-adsorbed peptides survive under UV irradiation among other unprotected species (storage step). Then, the MMT-adsorbed peptides can be released to the aqueous solution if the environment becomes more basic (releasing step), and these free peptides are ready for polymerization to polypeptides. Hence, a plausible prebiotic concentration–storage–release cycle of amino acids/peptides for further polypeptide synthesis is established. Full article
(This article belongs to the Special Issue Clays and the Origin of Life)
Show Figures

Figure 1

Review

Jump to: Research

32 pages, 3953 KiB  
Review
Urea-Assisted Synthesis and Characterization of Saponite with Different Octahedral (Mg, Zn, Ni, Co) and Tetrahedral Metals (Al, Ga, B), a Review
by Concepcion P. Ponce and J. Theo Kloprogge
Life 2020, 10(9), 168; https://doi.org/10.3390/life10090168 - 28 Aug 2020
Cited by 11 | Viewed by 3352
Abstract
Clay minerals surfaces potentially play a role in prebiotic synthesis through adsorption of organic monomers that give rise to highly concentrated systems; facilitate condensation and polymerization reactions, protection of early biomolecules from hydrolysis and photolysis, and surface-templating for specific adsorption and synthesis of [...] Read more.
Clay minerals surfaces potentially play a role in prebiotic synthesis through adsorption of organic monomers that give rise to highly concentrated systems; facilitate condensation and polymerization reactions, protection of early biomolecules from hydrolysis and photolysis, and surface-templating for specific adsorption and synthesis of organic molecules. This review presents processes of clay formation using saponite as a model clay mineral, since it has been shown to catalyze organic reactions, is easy to synthesize in large and pure form, and has tunable properties. In particular, a method involving urea is presented as a reasonable analog of natural processes. The method involves a two-step process: (1) formation of the precursor aluminosilicate gel and (2) hydrolysis of a divalent metal (Mg, Ni, Co, and Zn) by the slow release of ammonia from urea decomposition. The aluminosilicate gels in the first step forms a 4-fold-coordinated Al3+ similar to what is found in nature such as in volcanic glass. The use of urea, a compound figuring in many prebiotic model reactions, circumvents the formation of undesirable brucite, Mg(OH)2, in the final product, by slowly releasing ammonia thereby controlling the hydrolysis of magnesium. In addition, the substitution of B and Ga for Si and Al in saponite is also described. The saponite products from this urea-assisted synthesis were tested as catalysts for several organic reactions, including Friedel–Crafts alkylation, cracking, and isomerization reactions. Full article
(This article belongs to the Special Issue Clays and the Origin of Life)
Show Figures

Graphical abstract

Back to TopTop