Food Microbiological Contamination

A special issue of Life (ISSN 2075-1729). This special issue belongs to the section "Microbiology".

Deadline for manuscript submissions: 28 June 2024 | Viewed by 9843

Special Issue Editors


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Guest Editor
Istituto Zooprofilattico Sperimentale dell’Umbria e delle Marche “Togo Rosati”, Via Salvemini 1, 06126 Perugia, Italy
Interests: food safety; food quality; food spoilage bacteria; foodborne pathogens; natural antimicrobial; food microbiology; foodborne disease

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Guest Editor
Department of Veterinary Medicine, University of Perugia, Via San Costanzo 4, 06126 Perugia, Italy
Interests: food safety; food quality; food contaminats; food spoilage bacteria; foodborne pathogens; exposure assessment; dietary exposure; dairy products; meat products; seafood products
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Special Issue Information

Dear Colleagues,

Food microbiological contamination represents a very current global issue, since it poses a threat to consumer health and has relevant negative economic implications. Despite improved hygiene management systems and increased regulation, pathogenic bacteria continue to contaminate food, causing sporadic foodborne outbreaks around the world. Microbial contamination can occur at any step of the food chain and the implementation of effective food safety strategies is needed to control and eliminate potential microbial hazards.

This Special Issue will collect original research papers and review on different aspects of food microbiology and safety, including innovative natural food preservation strategies in order to reduce the microbiological risk.

Dr. Sara Primavilla
Dr. Rossana Roila
Guest Editors

Manuscript Submission Information

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Keywords

  • food safety
  • food microbiology
  • foodborne pathogens
  • food spoilage
  • food quality
  • food contamination
  • microbiological hazards
  • natural antimicrobials

Published Papers (8 papers)

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Research

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14 pages, 4638 KiB  
Article
Aflatoxins in Wheat Grains: Detection and Detoxification through Chemical, Physical, and Biological Means
by Ahmed Mahmoud Ismail, Muhammad Hassan Raza, Naseem Zahra, Rafiq Ahmad, Yasar Sajjad and Sabaz Ali Khan
Life 2024, 14(4), 535; https://doi.org/10.3390/life14040535 - 22 Apr 2024
Viewed by 302
Abstract
Wheat (Triticum aestivum L.) is an essential food crop in terms of consumption as well as production. Aflatoxin exposure has a widespread public health impact in economically developing nations, so there is a need to establish preventive techniques for these high-risk populations. Pre-harvest [...] Read more.
Wheat (Triticum aestivum L.) is an essential food crop in terms of consumption as well as production. Aflatoxin exposure has a widespread public health impact in economically developing nations, so there is a need to establish preventive techniques for these high-risk populations. Pre-harvest and post-harvest practices are the two strategies used to control aflatoxin contamination, which include the use of genetically modified crops that show resistance against Aspergillus infection, the use of pesticides, changing the planting and harvesting time of crops, and physical, chemical, and biological methods. In this research, aflatoxin detection and quantification were performed in different wheat varieties to determine quantitative differences in comparison to the European Commission’s limit of 4 ppb aflatoxins in wheat. TLC for qualitative and the ELISA kit method for quantitative analysis of aflatoxins were used. Out of 56 samples, 35 were found contaminated with aflatoxins, while the remaining 21 samples did not show any presence of aflatoxins. Out of the 35 contaminated samples, 20 samples showed aflatoxin contamination within the permissible limit, while the remaining 15 samples showed aflatoxin concentration beyond the permissible level, ranging from 0.49 to 20.56 ppb. After quantification, the nine highly contaminated wheat samples were detoxified using physical, chemical, and biological methods. The efficiency of these methods was assessed, and they showed a significant reduction in aflatoxins of 53–72%, 79–88%, and 80–88%, respectively. In conclusion, the difference in aflatoxin concentration in different wheat varieties could be due to genetic variations. Furthermore, biological treatment could be the method of choice for detoxification of aflatoxins in wheat as it greatly reduced the aflatoxin concentration with no harmful effect on the quality of the grains. Full article
(This article belongs to the Special Issue Food Microbiological Contamination)
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13 pages, 437 KiB  
Article
Assessment of the Microbiological Safety and Hygiene of Raw and Thermally Treated Milk Cheeses Marketed in Central Italy between 2013 and 2020
by Sara Primavilla, Rossana Roila, Elena Rocchegiani, Giuliana Blasi, Annalisa Petruzzelli, Claudia Gabucci, Donatella Ottaviani, Stefania Di Lullo, Raffaella Branciari, David Ranucci and Andrea Valiani
Life 2023, 13(12), 2324; https://doi.org/10.3390/life13122324 - 11 Dec 2023
Viewed by 846
Abstract
A profile of the microbial safety and hygiene of cheese in central Italy was defined based on an analysis of 1373 cheeses sampled under the Italian National Control Plan for Food Safety spanning the years 2013 to 2020 and tested according to Commission [...] Read more.
A profile of the microbial safety and hygiene of cheese in central Italy was defined based on an analysis of 1373 cheeses sampled under the Italian National Control Plan for Food Safety spanning the years 2013 to 2020 and tested according to Commission Regulation (EC) No. 2073/2005 (as amended). A total of 97.4% of cheese samples were assessed as being satisfactory for food safety criteria and 80.5% for process hygiene criteria. Staphylococcal enterotoxin was found in 2/414 samples, while Salmonella spp. and Listeria monocytogenes were detected in 15 samples out of 373 and 437, respectively. Escherichia coli and coagulase-positive staphylococci counts were found unsatisfactory in 12/61 and 17/88 cheese samples, respectively. The impact of milking species, milk thermal treatment, and cheese hardness category was considered. A statistically significant association (p < 0.05) was found between milk thermal treatment and the prevalence of coagulase-positive staphylococci and Listeria monocytogenes and between hardness and unsatisfactory levels of Escherichia coli. The data depict a contained public health risk associated with these products and confirm, at the same time, the importance of strict compliance with good hygiene practices during milk and cheese production. These results can assist in bolstering risk analysis and providing insights for food safety decision making. Full article
(This article belongs to the Special Issue Food Microbiological Contamination)
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14 pages, 2532 KiB  
Article
Diversity of Culture Microorganisms from Portuguese Sweet Cherries
by Ana C. Gonçalves, Amílcar Falcão, Gilberto Alves, Luís R. Silva and José D. Flores-Félix
Life 2023, 13(12), 2323; https://doi.org/10.3390/life13122323 - 11 Dec 2023
Viewed by 978
Abstract
Consumers today seek safe functional foods with proven health-promoting properties. Current evidence shows that a healthy diet can effectively alleviate oxidative stress levels and reduce inflammatory markers, thereby preventing the occurrence of many types of cancer, hypertension, and cardiovascular and neurological pathologies. Nevertheless, [...] Read more.
Consumers today seek safe functional foods with proven health-promoting properties. Current evidence shows that a healthy diet can effectively alleviate oxidative stress levels and reduce inflammatory markers, thereby preventing the occurrence of many types of cancer, hypertension, and cardiovascular and neurological pathologies. Nevertheless, as fruits and vegetables are mainly consumed fresh, they can serve as vectors for the transmission of pathogenic microorganisms associated with various disease outbreaks. As a result, there has been a surge in interest in the microbiome of fruits and vegetables. Therefore, given the growing interest in sweet cherries, and since their microbial communities have been largely ignored, the primary purpose of this study is to investigate their culturome at various maturity stages for the first time. A total of 55 microorganisms were isolated from sweet cherry fruit, comprising 23 bacteria and 32 fungi species. Subsequently, the selected isolates were molecularly identified by amplifying the 16S rRNA gene and ITS region. Furthermore, it was observed that the communities became more diverse as the fruit matured. The most abundant taxa included Pseudomonas and Ralstonia among the bacteria, and Metschnikowia, Aureobasidium, and Hanseniaspora among the fungi. Full article
(This article belongs to the Special Issue Food Microbiological Contamination)
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13 pages, 2715 KiB  
Article
Listeria monocytogenes ST37 Distribution in the Moscow Region and Properties of Clinical and Foodborne Isolates
by Olga L. Voronina, Marina S. Kunda, Natalia N. Ryzhova, Ekaterina I. Aksenova, Margarita A. Kustova, Tatiana I. Karpova, Alina R. Melkumyan, Elena A. Klimova, Olga A. Gruzdeva and Igor S. Tartakovsky
Life 2023, 13(11), 2167; https://doi.org/10.3390/life13112167 - 05 Nov 2023
Viewed by 1128
Abstract
Listerias of the phylogenetic lineage II (PLII) are common in the European environment and are hypovirulent. Despite this, they caused more than a third of the sporadic cases of listeriosis and multi-country foodborne outbreaks. L. monocytogenes ST37 is one of them. During the [...] Read more.
Listerias of the phylogenetic lineage II (PLII) are common in the European environment and are hypovirulent. Despite this, they caused more than a third of the sporadic cases of listeriosis and multi-country foodborne outbreaks. L. monocytogenes ST37 is one of them. During the COVID-19 pandemic, ST37 appeared in clinical cases and ranked second in occurrence among food isolates in the Moscow region. The aim of this study was to describe the genomic features of ST37 isolates from different sources. All clinical cases of ST37 were in the cohort of male patients (age, 48–81 years) with meningitis–septicemia manifestation and COVID-19 or Influenza in the anamnesis. The core genomes of the fish isolates were closely related. The clinical and meat isolates revealed a large diversity. Prophages (2–4/genome) were the source of the unique genes. Two clinical isolates displayed pseudolysogeny, and excided prophages were A006-like. In the absence of plasmids, the assortment of virulence factors and resistance determinants in the chromosome corresponded to the hypovirulent characteristics. However, all clinical isolates caused severe disease, with deaths in four cases. Thus, these studies allow us to speculate that a previous viral infection increases human susceptibility to listeriosis. Full article
(This article belongs to the Special Issue Food Microbiological Contamination)
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12 pages, 1576 KiB  
Article
Box–Behnken Design for Assessing the Efficiency of Aflatoxin M1 Detoxification in Milk Using Lactobacillus rhamnosus and Saccharomyces cerevisiae
by Mounir M. Salem-Bekhit, Omnia Karem M. Riad, Heba Mohammed Refat M. Selim, Sally Tohamy Kamal Tohamy, Ehab I. Taha, Saleh A. Al-Suwayeh and Gamal A. Shazly
Life 2023, 13(8), 1667; https://doi.org/10.3390/life13081667 - 31 Jul 2023
Cited by 1 | Viewed by 1191
Abstract
Milk contaminated with aflatoxin can lead to liver cancer. Aflatoxin B1 (AFB1), a serious animal feed contaminant, is transformed into Aflatoxin M1 (AFM1) and secreted in milk. In this study, a biological method using probiotic bacteria, Lactobacillus rhamnosus (L. rhamnosus) in [...] Read more.
Milk contaminated with aflatoxin can lead to liver cancer. Aflatoxin B1 (AFB1), a serious animal feed contaminant, is transformed into Aflatoxin M1 (AFM1) and secreted in milk. In this study, a biological method using probiotic bacteria, Lactobacillus rhamnosus (L. rhamnosus) in combination with Saccharomyces cerevisiae (S. cerevisiae), was used to assess their antiaflatoxigenic effect in animal milk. A Box–Behnken design was used to establish the optimal ratio of L. rhamnosus and S. cerevisiae, incubation time, and temperature for efficient AFM1 detoxification from milk. To achieve this, the primary, interaction, and quadratic effects of the chosen factors were investigated. To investigate the quadratic response surfaces, a second-order polynomial model was built using a three-factor, three-level Box–Behnken design. The quantity of AFM1 was detected by the ELISA technique. The results of these experiments obtained an optimum condition in AFM1 detoxification of the three tested factors in order to maximize their effect on AFM1 detoxification in milk. The model was tested in three highly contaminated milk samples to assure the efficacy of the model. AFM1 detoxification was up to 98.4% in contaminated milk samples. These promising results provide a safe, low-cost, and low-time-consuming solution to get rid of the problem of milk contamination with AFM1. Full article
(This article belongs to the Special Issue Food Microbiological Contamination)
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12 pages, 2552 KiB  
Article
Prediction of Pseudomonas spp. Population in Food Products and Culture Media Using Machine Learning-Based Regression Methods
by Fatih Tarlak and Özgün Yücel
Life 2023, 13(7), 1430; https://doi.org/10.3390/life13071430 - 22 Jun 2023
Cited by 2 | Viewed by 1101
Abstract
Machine learning approaches are alternative modelling techniques to traditional modelling equations used in predictive food microbiology and utilise algorithms to analyse large datasets that contain information about microbial growth or survival in various food matrices. These approaches leverage the power of algorithms to [...] Read more.
Machine learning approaches are alternative modelling techniques to traditional modelling equations used in predictive food microbiology and utilise algorithms to analyse large datasets that contain information about microbial growth or survival in various food matrices. These approaches leverage the power of algorithms to extract insights from the data and make predictions regarding the behaviour of microorganisms in different food environments. The objective of this study was to apply various machine learning-based regression methods, including support vector regression (SVR), Gaussian process regression (GPR), decision tree regression (DTR), and random forest regression (RFR), to estimate bacterial populations. In order to achieve this, a total of 5618 data points for Pseudomonas spp. present in food products (beef, pork, and poultry) and culture media were gathered from the ComBase database. The machine learning algorithms were applied to predict the growth or survival behaviour of Pseudomonas spp. in food products and culture media by considering predictor variables such as temperature, salt concentration, water activity, and acidity. The suitability of the algorithms was assessed using statistical measures such as coefficient of determination (R2), root mean square error (RMSE), bias factor (Bf), and accuracy (Af). Each of the regression algorithms showed appropriate estimation capabilities with R2 ranging from 0.886 to 0.913, RMSE from 0.724 to 0.899, Bf from 1.012 to 1.020, and Af from 1.086 to 1.101 for each food product and culture medium. Since the predictive capability of RFR was the best among the algorithms, externally collected data from the literature were used for RFR. The external validation process showed statistical indices of Bf ranging from 0.951 to 1.040 and Af ranging from 1.091 to 1.130, indicating that RFR can be used for predicting the survival and growth of microorganisms in food products. Therefore, machine learning approaches can be considered as an alternative to conventional modelling methods in predictive microbiology. However, it is important to highlight that the prediction power of the machine learning regression method directly depends on the dataset size, and it requires a large dataset to be employed for modelling. Therefore, the modelling work of this study can only be used for the prediction of Pseudomonas spp. in specific food products (beef, pork, and poultry) and culture medium with certain conditions where a large dataset is available. Full article
(This article belongs to the Special Issue Food Microbiological Contamination)
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Review

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37 pages, 1200 KiB  
Review
Common and Potential Emerging Foodborne Viruses: A Comprehensive Review
by Amin N. Olaimat, Asma’ O. Taybeh, Anas Al-Nabulsi, Murad Al-Holy, Ma’mon M. Hatmal, Jihad Alzyoud, Iman Aolymat, Mahmoud H. Abughoush, Hafiz Shahbaz, Anas Alzyoud, Tareq Osaili, Mutamed Ayyash, Kevin M. Coombs and Richard Holley
Life 2024, 14(2), 190; https://doi.org/10.3390/life14020190 - 28 Jan 2024
Cited by 1 | Viewed by 2022
Abstract
Human viruses and viruses from animals can cause illnesses in humans after the consumption of contaminated food or water. Contamination may occur during preparation by infected food handlers, during food production because of unsuitably controlled working conditions, or following the consumption of animal-based [...] Read more.
Human viruses and viruses from animals can cause illnesses in humans after the consumption of contaminated food or water. Contamination may occur during preparation by infected food handlers, during food production because of unsuitably controlled working conditions, or following the consumption of animal-based foods contaminated by a zoonotic virus. This review discussed the recent information available on the general and clinical characteristics of viruses, viral foodborne outbreaks and control strategies to prevent the viral contamination of food products and water. Viruses are responsible for the greatest number of illnesses from outbreaks caused by food, and risk assessment experts regard them as a high food safety priority. This concern is well founded, since a significant increase in viral foodborne outbreaks has occurred over the past 20 years. Norovirus, hepatitis A and E viruses, rotavirus, astrovirus, adenovirus, and sapovirus are the major common viruses associated with water or foodborne illness outbreaks. It is also suspected that many human viruses including Aichi virus, Nipah virus, tick-borne encephalitis virus, H5N1 avian influenza viruses, and coronaviruses (SARS-CoV-1, SARS-CoV-2 and MERS-CoV) also have the potential to be transmitted via food products. It is evident that the adoption of strict hygienic food processing measures from farm to table is required to prevent viruses from contaminating our food. Full article
(This article belongs to the Special Issue Food Microbiological Contamination)
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18 pages, 1596 KiB  
Review
Traditional Meat Products—A Mycotoxicological Review
by Krešimir Mastanjević, Dragan Kovačević, Ksenija Nešić, Vinko Krstanović and Kristina Habschied
Life 2023, 13(11), 2211; https://doi.org/10.3390/life13112211 - 14 Nov 2023
Viewed by 1057
Abstract
Traditional meat products are commonly produced in small family businesses. However, big industries are also involved in the production of this kind of product, especially since a growing number of consumers crave the traditional taste and aromas. The popularization of original and organic [...] Read more.
Traditional meat products are commonly produced in small family businesses. However, big industries are also involved in the production of this kind of product, especially since a growing number of consumers crave the traditional taste and aromas. The popularization of original and organic products has resulted in a return to traditional production methods. Traditional meat products are produced worldwide. However, in such (domesticated) conditions there is a potential danger for mycotoxin contamination. This review aims to present the sources of mycotoxins in traditional meat products, the most common mycotoxins related to such meat products, and future prospects regarding the suppression of their occurrence. Special attention should be paid to reducing the transfer of mycotoxins via the food chain from animal feed to animals to humans (stable-to-table principle), which is also described in this review. Other sources of mycotoxins (spices, environment, etc.) should also be monitored for mycotoxins in traditional production. The importance of monitoring and regulating mycotoxins in meat products, especially in traditional meat products, is slowly being recognized by the institutions and hopefully, in the future, can deliver legally regulated limits for such products. This is especially important since meat products are available to the general population and can seriously affect human health. Full article
(This article belongs to the Special Issue Food Microbiological Contamination)
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