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Crop Genome Editing 2.0

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Plant Sciences".

Deadline for manuscript submissions: 26 February 2025 | Viewed by 1195

Special Issue Editors


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Guest Editor
Department of Agriculture, Food and Environment (DAFE), University of Pisa, Via del Borghetto 80, I-56124 Pisa, Italy
Interests: bioinformatics application to plant breeding; plant structural and functional genomics; bioinformatics; genome structure and evolution; genome sequencing; crop improvement
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
Department of Agriculture, Food and Environment (DAFE), University of Pisa, Via del Borghetto 80, I-56124 Pisa, Italy
Interests: carotenoid biosynthesis; cell totipotency; development of axillary meristem; disease resistance; flower symmetry; nanotechnology; plant hormones; RNA silencing
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
Department of Agriculture, Food and Environment (DAFE), University of Pisa, Via del Borghetto 80, I-56124 Pisa, Italy
Interests: transcriptomic; plant biotic/abiotic stress; gene functioning; gene network; bioinformatics; genome-wide analysis for multigenic families; in vitro regeneration

Special Issue Information

Dear Colleagues,

Since 2012, innovations in CRISPR/Cas-mediated genome editing have been transforming a wide range of fields, from basic biological research to genetic improvement for crops to enhance plant productivity, quality, and resistance. One field that is ideally suited to genome editing applications is crop improvement due to the power of targeted mutations for novel trait development. The past few decades have seen remarkable advances in understanding the genetic control of key agronomic traits through QTL and GWAS mapping, whole-genome sequencing, candidate gene, and RNA-Seq analysis. CRISPR/Cas technologies now promise to rapidly accelerate functional gene validation of candidate genes, while at the same time providing an approach to precisely modify key genes controlling beneficial traits in crop species. Moreover, updated regulatory policies in many countries are now facilitating the commercialization of non-transgenic gene-edited cultivars. However, there are still bottlenecks that need to be addressed before high-throughput CRISPR/Cas-based genome editing becomes routine across the major crops, including the need to improve plant transformation efficiency, speed up in vitro tissue culture processes, and optimize precise allele modification. A safe and effective method to deliver genome-editing components is still a key challenge for in vitro genome editing. There are various reagent delivery approaches available that have enabled the delivery of DNA-free editing reagents. For instance, they invariably involve the use of ribonucleoproteins (RNPs) or deliver DNA/RNA/protein into the plant cells using viral vectors, lipofection, and nanoparticles. The discovery of new and smaller endonucleases and increasing cargo delivery capacity using nanoparticles is expected to enable the development of edited crops without reliance on disruptive physical delivery methods. The new era of crop genome editing will simultaneously accelerate the functional validation of key genes while enabling plant breeding to develop the next generation of improved crops to provide more sustainable agriculture and healthier foods for the future.

This Special Issue, “Crop Genome Editing 2.0”, will include research topics and review articles that address how CRISPR/Cas-mediated genome editing can be applied to plant genetic research and crop improvement. Original research articles describing novel crop genome editing techniques, approaches, and innovations are encouraged, as well as case studies where genome editing has been used for gene characterization and validation, novel trait development, or genetic dissection of key traits for crop improvement, including stress tolerance, disease resistance, and improved quality and nutrition.

Dr. Flavia Mascagni
Dr. Claudio Pugliesi
Dr. Alberto Vangelisti
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. International Journal of Molecular Sciences is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. There is an Article Processing Charge (APC) for publication in this open access journal. For details about the APC please see here. Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • CRISPR/Cas9
  • crop improvement
  • functional gene validation
  • genome editing
  • molecular genetics

Published Papers (1 paper)

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Review

19 pages, 2785 KiB  
Review
Future-Proofing Agriculture: De Novo Domestication for Sustainable and Resilient Crops
by Ugo Rogo, Samuel Simoni, Marco Fambrini, Tommaso Giordani, Claudio Pugliesi and Flavia Mascagni
Int. J. Mol. Sci. 2024, 25(4), 2374; https://doi.org/10.3390/ijms25042374 - 17 Feb 2024
Viewed by 893
Abstract
The worldwide agricultural system confronts a significant challenge represented by the increasing demand for food in the face of a growing global population. This challenge is exacerbated by a reduction in cultivable land and the adverse effects of climate change on crop yield [...] Read more.
The worldwide agricultural system confronts a significant challenge represented by the increasing demand for food in the face of a growing global population. This challenge is exacerbated by a reduction in cultivable land and the adverse effects of climate change on crop yield quantity and quality. Breeders actively embrace cutting-edge omics technologies to pursue resilient genotypes in response to these pressing issues. In this global context, new breeding techniques (NBTs) are emerging as the future of agriculture, offering a solution to introduce resilient crops that can ensure food security, particularly against challenging climate events. Indeed, the search for domestication genes as well as the genetic modification of these loci in wild species using genome editing tools are crucial steps in carrying out de novo domestication of wild plants without compromising their genetic background. Current knowledge allows us to take different paths from those taken by early Neolithic farmers, where crop domestication has opposed natural selection. In this process traits and alleles negatively correlated with high resource environment performance are probably eradicated through artificial selection, while others may have been lost randomly due to domestication and genetic bottlenecks. Thus, domestication led to highly productive plants with little genetic diversity, owing to the loss of valuable alleles that had evolved to tolerate biotic and abiotic stresses. Recent technological advances have increased the feasibility of de novo domestication of wild plants as a promising approach for crafting optimal crops while ensuring food security and using a more sustainable, low-input agriculture. Here, we explore what crucial domestication genes are, coupled with the advancement of technologies enabling the precise manipulation of target sequences, pointing out de novo domestication as a promising application for future crop development. Full article
(This article belongs to the Special Issue Crop Genome Editing 2.0)
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