Development of New Optical Techniques and Methods for Basic Biology and Biomedical Applications

A special issue of Biology (ISSN 2079-7737). This special issue belongs to the section "Medical Biology".

Deadline for manuscript submissions: 31 July 2024 | Viewed by 14183

Special Issue Editor


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Guest Editor
Institute of Molecular Genetics, Italian National Research Council (CNR), 27100 Pavia, Italy
Interests: photobiology; UV-visible autofluorescence analysis; endogenous fluorophores; label-free and real-time diagnosis; optical biopsy

Special Issue Information

Dear Colleagues,

The optically active biomolecules and microstructures that are intrinsic to biological materials, as well as the ever-new dyes and fluorophores produced by chemical synthesis, are increasingly being used for various kinds of investigations and analytical applications in biology and biomedicine. The expanding success in the use of optical methods and techniques is made possible by constant technological improvements. Innovative light sources, including lamps, LEDs, and lasers, ensure suitable selectivity and intensity of irradiation, which are also attainable through single- and multiphoton excitation and extension to the near-IR range. In turn, multi- and hyperspectral imaging, phasor approaches, fluorescence-lifetime imaging, spectral fitting, convolutional neural networks analyses, remote sensing, and other related automated procedures are examples of technologies which represent the advances in detection systems and data processing.

Light-based studies on plants include functional mechanisms, such as photosystems; components, such as beneficial flavonoids or betalains and their derivatives; the development of light-based procedures for industrial applications in energy, biomass, or food production and control; remote real-time diagnosis of vegetable disease; and environmental or waste-processing surveillance.

Light-based studies on animals include the characterization of surface pigments or iridescence for evolutionary, taxonomic, behavioral, and environmental purposes; tools for optically active sensing devices; and, again, food production and control. On the other hand, endogenous or exogenous pigments and fluorophores, which are specifically related to metabolic and physiological processes in cells, tissues, organs, and fluids, are the basis for the development of optical-based assays in biomedicine, permitting the mechanisms underlying the development of pathology to be unveiled, and enabling the development of optical biopsy procedures for the in situ, real-time diagnosis and monitoring of disease.    

This Special Issue is not limited to the topics mentioned here or those recalled by the keywords, but is open to all discussions relevant to the development of new techniques and methods which aim to exploit optical events for assays, investigations, and applications on living beings, from basic biology to the biomedical field.

Dr. Anna Cleta Croce
Guest Editor

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Keywords

  • food production and control
  • imaging (multispectral/hyperspectral/time resolved)
  • luminescence
  • metabolism (animal/vegetable)
  • optical biopsy
  • optical coherence tomography
  • optical neuronal networks
  • photoacoustic tomography
  • remote sensing
  • spectroscopy

Published Papers (8 papers)

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Research

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12 pages, 3930 KiB  
Article
Enhanced TfR1 Recognition of Myocardial Injury after Acute Myocardial Infarction with Cardiac Fibrosis via Pre-Degrading Excess Fibrotic Collagen
by Wenwen Yang, Yueqi Wang, Hongzheng Li, Feifei Liao, Yuxuan Peng, Aimei Lu, Ling Tan, Hua Qu, Linzi Long and Changgeng Fu
Biology 2024, 13(4), 213; https://doi.org/10.3390/biology13040213 - 25 Mar 2024
Viewed by 626
Abstract
The fibrosis process after myocardial infarction (MI) results in a decline in cardiac function due to fibrotic collagen deposition and contrast agents’ metabolic disorders, posing a significant challenge to conventional imaging strategies in making heart damage clear in the fibrosis microenvironment. To address [...] Read more.
The fibrosis process after myocardial infarction (MI) results in a decline in cardiac function due to fibrotic collagen deposition and contrast agents’ metabolic disorders, posing a significant challenge to conventional imaging strategies in making heart damage clear in the fibrosis microenvironment. To address this issue, we developed an imaging strategy. Specifically, we pretreated myocardial fibrotic collagen with collagenase I combined with human serum albumin (HSA-C) and subsequently visualized the site of cardiac injury by near-infrared (NIR) fluorescence imaging using an optical contrast agent (CI, CRT-indocyanine green) targeting transferrin receptor 1 peptides (CRT). The key point of this strategy is that pretreatment with HSA-C can reduce background signal interference in the fibrotic tissue while enhancing CI uptake at the heart lesion site, making the boundary between the injured heart tissue and the normal myocardium clearer. Our results showed that compared to that in the untargeted group, the normalized fluorescence intensity of cardiac damage detected by NIR in the targeted group increased 1.28-fold. The normalized fluorescence intensity increased 1.21-fold in the pretreatment group of the targeted groups. These data demonstrate the feasibility of applying pretreated fibrotic collagen and NIR contrast agents targeting TfR1 to identify ferroptosis at sites of cardiac injury, and its clinical value in the management of patients with MI needs further study. Full article
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14 pages, 5941 KiB  
Article
Gold-Nanorod-Assisted Live Cell Nuclear Imaging Based on Near-Infrared II Dark-Field Microscopy
by Yifeng Shi, Shiyi Peng, Zhongyu Huang, Zhe Feng, Wen Liu, Jun Qian and Weidong Zhou
Biology 2023, 12(11), 1391; https://doi.org/10.3390/biology12111391 - 31 Oct 2023
Viewed by 1218
Abstract
Dark-field microscopy offers several advantages, including high image contrast, minimal cell damage, and the absence of photobleaching of nanoprobes, which make it highly advantageous for cell imaging. The NIR-II window has emerged as a prominent research focus in optical imaging in recent years, [...] Read more.
Dark-field microscopy offers several advantages, including high image contrast, minimal cell damage, and the absence of photobleaching of nanoprobes, which make it highly advantageous for cell imaging. The NIR-II window has emerged as a prominent research focus in optical imaging in recent years, with its low autofluorescence background in biological samples and high imaging SBR. In this study, we initially compared dark-field imaging results of colorectal cancer cells in both visible and NIR-II wavelengths, confirming the superior performance of NIR-II imaging. Subsequently, we synthesized gold nanorods with localized surface plasmon resonance (LSPR) absorption peaks in the NIR-II window. After bio-compatible modification, we non-specifically labeled colorectal cancer cells for NIR-II dark-field scattering imaging. The imaging results revealed a sixfold increase in SBR, especially in the 1425–1475 nm wavelength range. Finally, we applied this imaging system to perform dark-field imaging of cell nuclei in the NIR-II region and used GNRs for specific nuclear labeling in colorectal cancer cells. The resulting images exhibited higher SBR than non-specifically-labeled cell imaging, and the probe’s labeling was precise, confirming the potential application of this system in photothermal therapy and drug delivery for cancer cells. Full article
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15 pages, 3409 KiB  
Article
Characterization of Spontaneous Melanization by Fluorescence Spectroscopy: A Basis for Analytical Application to Biological Substrates
by Anna Cleta Croce and Francesca Scolari
Biology 2023, 12(3), 433; https://doi.org/10.3390/biology12030433 - 11 Mar 2023
Cited by 2 | Viewed by 1528
Abstract
Melanin is present in various biological substrates where it may participate in several processes, from innate immunity to the still-unsolved opposite roles in antioxidant protection, including photoprotection and the related ability to interact with light. Melanin–light interaction has also been an important source [...] Read more.
Melanin is present in various biological substrates where it may participate in several processes, from innate immunity to the still-unsolved opposite roles in antioxidant protection, including photoprotection and the related ability to interact with light. Melanin–light interaction has also been an important source of inspiration for the development of innovative bioengineering applications. These are based on melanin’s light-energy-absorption ability of its chemically and structurally complex components and precursors, and on the improvement in analytical and diagnostic procedures in biomedicine. In this regard, here, we characterized the fluorescence spectral properties of melanin and of its precursor L-tyrosine in an aqueous solution during spontaneous melanization. Besides the confirmation of the typical fluorescence-emission signature of melanin and L-tyrosine, we provide additional insights on both emission and excitation spectra recorded during melanization. On these bases, we performed a subsequent characterization on the aqueous extracts from two different melanin-containing biological substrates, namely hairs from a domestic black cat and eggs from the Asian tiger mosquito. The results from the mild extraction procedure, purposely applied to obtain only the soluble components, combined with fluorescence spectral analysis are expected to promote further investigation of the melanization processes, particularly in insects. Full article
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15 pages, 2927 KiB  
Article
Evaluation of Thermal Changes of the Sole Surface in Horses with Palmar Foot Pain: A Pilot Study
by Cristian Zaha, Larisa Schuszler, Roxana Dascalu, Paula Nistor, Tiana Florea, Kálmán Imre, Ciprian Rujescu, Bogdan Sicoe and Cornel Igna
Biology 2023, 12(3), 423; https://doi.org/10.3390/biology12030423 - 10 Mar 2023
Cited by 2 | Viewed by 1425
Abstract
Background: Horses with palmar foot pain do not show a typical increase in temperature in the palmar aspect of the hoof and heel due to low blood flow. The objectives of the current study were to determine the changes and differences in the [...] Read more.
Background: Horses with palmar foot pain do not show a typical increase in temperature in the palmar aspect of the hoof and heel due to low blood flow. The objectives of the current study were to determine the changes and differences in the thermographic pattern of the sole surface in horses with unilateral palmar foot pain and non-lame horses before and after training. We hypothesized that the thermal pattern and the local temperature of the frog area and toe area would be similar, with an increased local temperature after training in both lame and non-lame horses. A pilot study was conducted to investigate the accuracy of thermography used to detect changes in local temperature and to compare the thermal patterns observed on the sole surface after training. Methods: The study group included eight horses with unilateral forelimb palmar foot pain (n = 8) and healthy contralateral limbs (n = 8). Four additional non-lame horses served as controls. The horses were selected for the study based on the following criteria: forelimb with unilateral chronic progressive lameness and positive reactions when performing the hoof test and frog wedge test, degenerative findings of the navicular bone, and improvement in lameness after perineural analgesia of the medial and lateral palmar digital nerve. The local temperatures of the frog and toe areas were measured before and after training in the affected and contralateral limbs in the study group and both forelimbs in the control group using an FLIR E50 thermal camera. Receiver operating characteristic (ROC) curve analysis was applied to check the sensitivity and specificity of the results for the studied groups. Results: The thermal patterns of the hoof presented differences between the three groups of horse limbs. After training, the temperature of the sole surface increased, and its area increased in the limbs affected with palmar foot pain compared with the non-lame limbs in the study group and the limbs in the control group. The temperature of the frog area did not increase after training in the limbs affected with palmar foot pain compared with the same area in the other groups. The ROC curve analysis demonstrated the medical applicability of this tool and showed that thermography is a reliable diagnostic test to correctly discriminate between non-lame horses and those with palmar foot pain. Conclusions: We recommend thermographic scanning of the toe and frog area to detect changes in the local temperature of the sole surface after training to discriminate the horses with palmar foot pain from non-lame ones. Further investigation is required to clarify whether the observed thermographic imaging features of the sole surface are characteristic for horses with palmar foot pain. Full article
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12 pages, 1561 KiB  
Article
SPIM-Flow: An Integrated Light Sheet and Microfluidics Platform for Hydrodynamic Studies of Hydra
by Per Niklas Hedde, Brian T. Le, Erika L. Gomez, Leora Duong, Robert E. Steele and Siavash Ahrar
Biology 2023, 12(1), 116; https://doi.org/10.3390/biology12010116 - 11 Jan 2023
Cited by 2 | Viewed by 2140
Abstract
Selective plane illumination microscopy (SPIM), or light sheet microscopy, is a powerful imaging approach. However, access to and interfacing microscopes with microfluidics have remained challenging. Complex interfacing with microfluidics has limited the SPIM’s utility for studying the hydrodynamics of freely moving multicellular organisms. [...] Read more.
Selective plane illumination microscopy (SPIM), or light sheet microscopy, is a powerful imaging approach. However, access to and interfacing microscopes with microfluidics have remained challenging. Complex interfacing with microfluidics has limited the SPIM’s utility for studying the hydrodynamics of freely moving multicellular organisms. We developed SPIM-Flow, an inexpensive light sheet platform that enables easy integration with microfluidics. We used SPIM-Flow to investigate the hydrodynamics of a freely moving Hydra polyp via particle tracking in millimeter-sized chambers. Initial experiments across multiple animals, feeding on a chip (Artemia franciscana nauplii used as food), and baseline behaviors (tentacle swaying, elongation, and bending) indicated the organisms’ health inside the system. Fluidics were used to investigate Hydra’s response to flow. The results suggested that the animals responded to an established flow by bending and swaying their tentacles in the flow direction. Finally, using SPIM-Flow in a proof-of-concept experiment, the shear stress required to detach an animal from a surface was demonstrated. Our results demonstrated SPIM-Flow’s utility for investigating the hydrodynamics of freely moving animals. Full article
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16 pages, 2050 KiB  
Article
Analysis of Vibration Frequency and Direction for Facilitating Upper-Limb Muscle Activity
by Cheng-Hua Ni, Yueh-Hsun Lu, Li-Wei Chou, Shu-Fen Kuo, Chia-Huei Lin, Shang-Lin Chiang, Liang-Hsuan Lu, Xin-Miao Wang, Jia-Lan Chang and Chueh-Ho Lin
Biology 2023, 12(1), 48; https://doi.org/10.3390/biology12010048 - 27 Dec 2022
Cited by 1 | Viewed by 2235
Abstract
We aimed to determine the effect of vibration frequency and direction on upper-limb muscle activation using a handheld vibrator. We recruited 19 healthy participants who were instructed to hold a handheld vibrator in their dominant hand and maintain the elbow at 90° flexion, [...] Read more.
We aimed to determine the effect of vibration frequency and direction on upper-limb muscle activation using a handheld vibrator. We recruited 19 healthy participants who were instructed to hold a handheld vibrator in their dominant hand and maintain the elbow at 90° flexion, while vertical and horizontal vibrations were applied with frequencies of 15, 30, 45, and 60 Hz for 60 s each. Surface electromyography (EMG) measured the activities of the flexor digitorum superficialis (FDS), flexor carpi radialis (FCR), extensor carpi ulnaris (ECU), extensor carpi radialis (ECR), biceps, triceps, and deltoid anterior muscles. EMG changes were evaluated as the difference in muscle activity between vibration and no-vibration (0 Hz) conditions. Muscle activity was induced under vibration conditions in both vertical and horizontal (p < 0.05) directions. At 45 Hz, FDS and FCR activities increased during horizontal vibrations, compared with those during vertical vibrations. ECU activity significantly increased under 15-Hz vertical vibrations compared with that during horizontal vibrations. Vibrations from the handheld vibrator significantly induced upper-limb muscle activity. The maximum muscle activations for FDS, ECR, ECU, biceps, and triceps were induced by 45-Hz horizontal vibration. The 60-Hz vertical and 30-Hz horizontal vibrations facilitated maximum muscle activations for the FCR and deltoid anterior, respectively. Full article
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Review

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19 pages, 8898 KiB  
Review
Near-Infrared Transillumination for Macroscopic Functional Imaging of Animal Bodies
by Koichi Shimizu
Biology 2023, 12(11), 1362; https://doi.org/10.3390/biology12111362 - 24 Oct 2023
Cited by 2 | Viewed by 1062
Abstract
The classical transillumination technique has been revitalized through recent advancements in optical technology, enhancing its applicability in the realm of biomedical research. With a new perspective on near-axis scattered light, we have harnessed near-infrared (NIR) light to visualize intricate internal light-absorbing structures within [...] Read more.
The classical transillumination technique has been revitalized through recent advancements in optical technology, enhancing its applicability in the realm of biomedical research. With a new perspective on near-axis scattered light, we have harnessed near-infrared (NIR) light to visualize intricate internal light-absorbing structures within animal bodies. By leveraging the principle of differentiation, we have extended the applicability of the Beer–Lambert law even in cases of scattering-dominant media, such as animal body tissues. This approach facilitates the visualization of dynamic physiological changes occurring within animal bodies, thereby enabling noninvasive, real-time imaging of macroscopic functionality in vivo. An important challenge inherent to transillumination imaging lies in the image blur caused by pronounced light scattering within body tissues. By extracting near-axis scattered components from the predominant diffusely scattered light, we have achieved cross-sectional imaging of animal bodies. Furthermore, we have introduced software-based techniques encompassing deconvolution using the point spread function and the application of deep learning principles to counteract the scattering effect. Finally, transillumination imaging has been elevated from two-dimensional to three-dimensional imaging. The effectiveness and applicability of these proposed techniques have been validated through comprehensive simulations and experiments involving human and animal subjects. As demonstrated through these studies, transillumination imaging coupled with emerging technologies offers a promising avenue for future biomedical applications. Full article
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18 pages, 3306 KiB  
Review
Non-Invasive Assessment of Vascular Circulation Based on Flow Mediated Skin Fluorescence (FMSF)
by Andrzej Marcinek, Joanna Katarzynska, Leslaw Sieron, Robert Skokowski, Jacek Zielinski and Jerzy Gebicki
Biology 2023, 12(3), 385; https://doi.org/10.3390/biology12030385 - 28 Feb 2023
Cited by 6 | Viewed by 2925
Abstract
Flow Mediated Skin Fluorescence (FMSF) is a new non-invasive method for assessing vascular circulation and/or metabolic regulation. It enables assessment of both vasoconstriction and vasodilation. The method measures stimulation of the circulation in response to post-occlusive reactive hyperemia (PORH). It analyzes the dynamical [...] Read more.
Flow Mediated Skin Fluorescence (FMSF) is a new non-invasive method for assessing vascular circulation and/or metabolic regulation. It enables assessment of both vasoconstriction and vasodilation. The method measures stimulation of the circulation in response to post-occlusive reactive hyperemia (PORH). It analyzes the dynamical changes in the emission of NADH fluorescence from skin tissue, providing the information on mitochondrial metabolic status and intracellular oxygen delivery through the circulatory system. Assessment of the vascular state using the FMSF technique is based on three parameters: reactive hyperemia response (RHR), hypoxia sensitivity (HS), and normoxia oscillatory index (NOI). The RHR and HS parameters determine the risk of vascular circulatory disorders and are the main diagnostic parameters. The NOI parameter is an auxiliary parameter for evaluating the state of microcirculation under stress of various origins (e.g., emotional stress, physical exhaustion, or post-infection stress). The clinical data show that the risk of vascular complications is limited among people whose RHR, log(HS), and NOI parameters are not significantly below the mean values determined by the FMSF technique, especially if they simultaneously meet the conditions RHR > 30% and log(HS) > 1.5 (HS > 30), and NOI > 60%. Full article
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