Role of Gene and Hormone Regulation in Adventitious Root Formation in Trees

A special issue of Plants (ISSN 2223-7747). This special issue belongs to the section "Plant Development and Morphogenesis".

Deadline for manuscript submissions: closed (30 April 2023) | Viewed by 4000

Special Issue Editors


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Guest Editor
Plant Production Department, Misión Biológica de Galicia, Avda. de Vigo s/n, 15705 Santiago de Compostela, Spain
Interests: adventitious root formation; cell reprogramming; in vitro culture; plant regeneration; epigenetics; maturation; woody species; functional genomics
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E-Mail Website
Guest Editor
Plant Production Department, Misión Biológica de Galicia, Avda. de Vigo s/n, 15705 Santiago de Compostela, Spain
Interests: woody species; in vitro culture; adventitious rooting; molecular biology; biotechnology; transcriptomics; maturation
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

De novo root regeneration, a crucial step for clonal propagation of plant species by cuttings, is a complex genotype-dependent trait affected by several inner and outer cues, including the physiological status and age of the plant, phytohormone homeostasis, nutrient availability, carbohydrate dynamics, light conditions, biotic factors, etc. The recalcitrance to root regeneration of many trees is the main hurdle hindering the vegetive propagation of elite genotypes and forest industry development. In cuttings of woody species, current models suggest that both initial wounding and auxin are essential to trigger the process, where auxin plays a master-regulator role and integrates into its plastic signaling pathways the inputs from several other gene and phytohormone routes.

Initial wounding causes a major shift in the balance of several phytohormones, including a transient burst of jasmonic acid and ethylene, followed by the local accumulation of auxin in the wounding zone through auxin biosynthesis and transport. This spatial-constraint buildup of auxin derives in the formation of a tissue gradient of the hormone that results in the priming of specific cells in the vasculature or neighboring zones, and those cells change their previous fate and become the so-called root founder cells.

In general terms, ethylene and jasmonic acid have an early positive role with auxin in the formation of adventitious roots, whereas gibberellins, abscisic acid, and cytokinins are expected to negatively influence the development of the new roots. However, given the complex nature of the induction and growth of adventitious roots, no unambiguous model has been established that could be valid for every species, and the identity of many genes involved in this morphogenetic route remains elusive. Furthermore, several other molecular cues exert an influence in the process, such as microtubule and cell wall remodelling, epigenetics modifications, and microRNAs activity, probably through a complex interaction with phytohormone homeostasis and derived regulation of specific gene expression.

The release of draft genomes of many woody species, the affordable access to transcriptomics analysis, and the popularization of mass spectrometry techniques to quantify phytohormones in plant tissues has enabled the expansion of studies concerning the characterization of the different steps of adventitious rooting in many non-model species. The integration of results obtained through these techniques facilitates the characterization of specific signaling networks and the development of conceptual models. With this Special Issue, our aim is to provide a platform for the communication of research related to the gene and phytohormone control of adventitious root formation in trees and woody species, allowing for a precise description of the molecular pathways involved in every phase of the process, which may pave the way for an optimized exploitation of the available resources.

Dr. Conchi Sánchez
Dr. Jesús M. Vielba
Guest Editors

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Keywords

  • adventitious rooting
  • cuttings
  • phytohormones
  • signaling networks
  • translational research
  • transcriptomics
  • recalcitrance
  • woody species

Published Papers (2 papers)

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Research

15 pages, 3593 KiB  
Article
Histone Acetyltransferase GCN5 Affects Auxin Transport during Root Growth by Modulating Histone Acetylation and Gene Expression of PINs
by Stylianos Poulios, Foteini Tsilimigka, Areti Mallioura, Dimitris Pappas, Eleftheria Seira and Konstantinos Vlachonasios
Plants 2022, 11(24), 3572; https://doi.org/10.3390/plants11243572 - 17 Dec 2022
Cited by 1 | Viewed by 1875
Abstract
General Control Non-Derepressible 5 (GCN5) is a histone acetyltransferase that targets multiple genes and is essential for the acetylation of Lysine residues in the N-terminal tail of histone H3 in Arabidopsis. GCN5 interacts with the transcriptional coactivator Alteration/Deficiency in Activation 2b (ADA2b), which [...] Read more.
General Control Non-Derepressible 5 (GCN5) is a histone acetyltransferase that targets multiple genes and is essential for the acetylation of Lysine residues in the N-terminal tail of histone H3 in Arabidopsis. GCN5 interacts with the transcriptional coactivator Alteration/Deficiency in Activation 2b (ADA2b), which enhances its activity functioning in multiprotein complexes, such as the Spt-Ada-Gcn5-Acetyltransferase complex (SAGA). Mutations in GCN5 and ADA2b result in pleiotropic phenotypes, including alterations in the growth of roots. Auxin is known to regulate root development by modulating gene expression patterns. Auxin moves polarly during plant growth via the Pin-formed (PIN) auxin efflux transport proteins. The effect of GCN5 and ADA2b on auxin distribution at different stages of early root growth (4 to 7 days post-germination) was studied using the reporter lines DR5rev::GFP and PIN1::PIN1-GFP. In wild-type plants, auxin efflux transporter PIN1 expression increases from the fourth to the seventh day of root growth. The PIN1 expression was reduced in the roots of gcn5-1 and ada2b-1 compared to the wild type. The expression of PIN1 in ada2b-1 mutants is confined only to the meristematic zone, specifically in the stele cells, whereas it is almost abolished in the elongation zone. Gene expression analysis showed that genes associated with auxin transport, PIN1, PIN3 and PIN4, are downregulated in gcn5-1 and ada2b-1 mutants relative to the wild type. As a result, auxin accumulation was also reduced in gcn5-1 and ada2b-1 compared to wild-type roots. Furthermore, acetylation of Lysine 14 of histone H3 (H3K14) was also affected in the promoter and coding region of PIN1, PIN3 and PIN4 genes during root growth of Arabidopsis in gcn5 mutants. In conclusion, GCN5 acts as a positive regulator of auxin distribution in early root growth by modulating histone H3 acetylation and the expression of auxin efflux transport genes. Full article
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20 pages, 3200 KiB  
Article
Transcriptomics Analysis Reveals a Putative Role for Hormone Signaling and MADS-Box Genes in Mature Chestnut Shoots Rooting Recalcitrance
by Jesús Mª Vielba, Saleta Rico, Nevzat Sevgin, Ricardo Castro-Camba, Purificación Covelo, Nieves Vidal and Conchi Sánchez
Plants 2022, 11(24), 3486; https://doi.org/10.3390/plants11243486 - 13 Dec 2022
Cited by 5 | Viewed by 1395
Abstract
Maturation imposes several changes in plants, which are particularly drastic in the case of trees. In recalcitrant woody species, such as chestnut (Castanea sativa Mill.), one of the major maturation-related shifts is the loss of the ability to form adventitious roots in [...] Read more.
Maturation imposes several changes in plants, which are particularly drastic in the case of trees. In recalcitrant woody species, such as chestnut (Castanea sativa Mill.), one of the major maturation-related shifts is the loss of the ability to form adventitious roots in response to auxin treatment as the plant ages. To analyze the molecular mechanisms underlying this phenomenon, an in vitro model system of two different lines of microshoots derived from the same field-grown tree was established. While juvenile-like shoots root readily when treated with exogenous auxin, microshoots established from the crown of the tree rarely form roots. In the present study, a transcriptomic analysis was developed to compare the gene expression patterns in both types of shoots 24 h after hormone and wounding treatment, matching the induction phase of the process. Our results support the hypothesis that the inability of adult chestnut tissues to respond to the inductive treatment relies in a deep change of gene expression imposed by maturation that results in a significant transcriptome modification. Differences in phytohormone signaling seem to be the main cause for the recalcitrant behavior of mature shoots, with abscisic acid and ethylene negatively influencing the rooting ability of the chestnut plants. We have identified a set of related MADS-box genes whose expression is modified but not suppressed by the inductive treatment in mature shoots, suggesting a putative link of their activity with the rooting-recalcitrant behavior of this material. Overall, distinct maturation-derived auxin sensibility and homeostasis, and the related modifications in the balance with other phytohormones, seem to govern the outcome of the process in each type of shoots. Full article
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