Special Issue "Zebrafish as a Powerful Tool for Drug Discovery 2023"

A special issue of Pharmaceuticals (ISSN 1424-8247). This special issue belongs to the section "Medicinal Chemistry".

Deadline for manuscript submissions: 22 February 2024 | Viewed by 7369

Special Issue Editor

Department of Integrative Pharmacology, Mie University Graduate School of Medicine, Tsu 514-8507, Japan
Interests: pharmacology; toxicology; primary cilia; neurodevelopmental disorder; integrative omics approach; zebrafish
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

Our scientific and technological knowledge has grown tremendously. The number of drugs approved relative to the costs, however, has continuously decreased. Various approaches have emerged to increase the efficacy of research and the development of new drugs. It has been widely recognized that zebrafish can be powerful tools in the drug discovery field, given advantages such as high fecundity, ease of drug administration, similarity to mammals in terms of structures and functions of various tissues, and suitability for the 3Rs (replacement, reduction, and refinement). The process of drug development consists of multiple steps, including the initial discovery of drugs that can be used as therapeutics, preclinical, and clinical validation of their efficacy and toxicity, and the review, approval, and post-marketing surveillance of drugs by regulatory authorities. Using genome-editing technologies, genetic abnormalities observed in human diseases can be mimicked in zebrafish to make a disease model. The phenotypes of the disease model zebrafish can be used to identify novel compounds and/or new indications for old drugs (i.e., drug repositioning) that ameliorate the abnormal phenotypes of the zebrafish disease models. The toxicity of compounds can also be assessed using zebrafish. The International Council for Harmonization has considered including developmental toxicity testing using zebrafish in their guidelines. Zebrafish can also be integrated to validate the efficacy and toxicities of compounds that are identified as novel therapeutics by other approaches, such as computational drug discovery using big data. In this Special Issue, we invite authors to contribute articles focusing on zebrafish as powerful tools for drug discovery. This research topic will maximize the knowledge of the usefulness of zebrafish in drug development, with hopes of increasing the efficiency of the process and identifying drugs that can be used to prevent and/or treat diseases for which effective medications are currently lacking.

Prof. Dr. Yuhei Nishimura
Guest Editor

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Keywords

  • zebrafish
  • disease model
  • phenotype
  • drug repositioning
  • computational biology
  • toxicology

Published Papers (4 papers)

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Research

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16 pages, 2545 KiB  
Article
Zebrafish Patient-Derived Xenograft Model as a Preclinical Platform for Uveal Melanoma Drug Discovery
Pharmaceuticals 2023, 16(4), 598; https://doi.org/10.3390/ph16040598 - 15 Apr 2023
Cited by 1 | Viewed by 1592
Abstract
Uveal melanoma (UM) is a rare malignant cancer of the eye, with up to 50% of patients dying from metastasis, for which no effective treatment is available. Due to the rarity of the disease, there is a great need to harness the limited [...] Read more.
Uveal melanoma (UM) is a rare malignant cancer of the eye, with up to 50% of patients dying from metastasis, for which no effective treatment is available. Due to the rarity of the disease, there is a great need to harness the limited material available from primary tumors and metastases for advanced research and preclinical drug screening. We established a platform to isolate, preserve, and transiently recover viable tissues, followed by the generation of spheroid cultures derived from primary UM. All assessed tumor-derived samples formed spheroids in culture within 24 h and stained positive for melanocyte-specific markers, indicating the retention of their melanocytic origin. These short-lived spheroids were only maintained for the duration of the experiment (7 days) or re-established from frozen tumor tissue acquired from the same patient. Intravenous injection of fluorescently labeled UM cells derived from these spheroids into zebrafish yielded a reproducible metastatic phenotype and recapitulated molecular features of the disseminating UM. This approach allowed for the experimental replications required for reliable drug screening (at least 2 individual biological experiments, with n > 20). Drug treatments with navitoclax and everolimus validated the zebrafish patient-derived model as a versatile preclinical tool for screening anti-UM drugs and as a preclinical platform to predict personalized drug responses. Full article
(This article belongs to the Special Issue Zebrafish as a Powerful Tool for Drug Discovery 2023)
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13 pages, 2299 KiB  
Article
Augmentation of Pectoral Fin Teratogenicity by Thalidomide in Human Cytochrome P450 3A-Expressing Zebrafish
Pharmaceuticals 2023, 16(3), 368; https://doi.org/10.3390/ph16030368 - 28 Feb 2023
Cited by 1 | Viewed by 1313
Abstract
The pharmacological and toxicological effects of active metabolites of enzymes including cytochrome P450 (CYP) are important. While it has been believed for a long time that thalidomide causes characteristic limb malformation only in rabbits and primates including humans, the involvement of their CYP3A [...] Read more.
The pharmacological and toxicological effects of active metabolites of enzymes including cytochrome P450 (CYP) are important. While it has been believed for a long time that thalidomide causes characteristic limb malformation only in rabbits and primates including humans, the involvement of their CYP3A subtypes (CYP3As) has been suggested. Recently, however, it was reported that zebrafish were sensitive to thalidomide, showing defects of pectoral fins, homologous organs of forelimbs in mammals, as well as other deformities. In this study, we prepared human CYP3A7 (hCYP3A7)-expressing zebrafish (F0) using a transposon system. Thalidomide caused pectoral fin defects and other malformations including pericardial edema in hCYP3A7-expressing embryos/larvae but not in wild-type and hCYP1A1-expressing embryos/larvae. Thalidomide also reduced the expression of fibroblast growth factor 8 in pectoral fin buds in only hCYP3A7-expressing embryos/larvae. The results suggest the involvement of human-type CYP3A in thalidomide teratogenicity. Full article
(This article belongs to the Special Issue Zebrafish as a Powerful Tool for Drug Discovery 2023)
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23 pages, 5615 KiB  
Article
Discovering a Multi-Component Combination against Vascular Dementia from Danshen-Honghua Herbal Pair by Spectrum-Effect Relationship Analysis
Pharmaceuticals 2022, 15(9), 1073; https://doi.org/10.3390/ph15091073 - 29 Aug 2022
Cited by 3 | Viewed by 1597
Abstract
The Danshen-Honghua (DH) herbal pair exhibits a synergistic effect in protecting the cerebrovascular system from ischemia/reperfusion injury, but the therapeutic effect on vascular dementia (VaD) has not been clarified, and the main active ingredient group has not been clarified. In this work, the [...] Read more.
The Danshen-Honghua (DH) herbal pair exhibits a synergistic effect in protecting the cerebrovascular system from ischemia/reperfusion injury, but the therapeutic effect on vascular dementia (VaD) has not been clarified, and the main active ingredient group has not been clarified. In this work, the chemical constituents in DH herbal pair extract were characterized by UHPLC-QTOF MS, and a total of 72 compounds were identified. Moreover, the DH herbal pair alleviated phenylhydrazine (PHZ)-induced thrombosis and improved bisphenol F (BPF)- and ponatinib-induced brain injury in zebrafish. Furthermore, the spectrum-effect relationship between the fingerprint of the DH herbal pair and the antithrombotic and neuroprotective efficacy was analyzed, and 11 chemical components were screened out as the multi-component combination (MCC) against VaD. Among them, the two compounds with the highest content were salvianolic acid B (17.31 ± 0.20 mg/g) and hydroxysafflor yellow A (15.85 ± 0.19 mg/g). Finally, we combined these 11 candidate compounds as the MCC and found that it could improve thrombosis and neuronal injury in three zebrafish models and rat bilateral common carotid artery occlusion (BCCAO) model, which had similar efficacy compared to the DH herbal pair. This study provides research ideas for the treatment of VaD and the clinical application of the DH herbal pair. Full article
(This article belongs to the Special Issue Zebrafish as a Powerful Tool for Drug Discovery 2023)
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Review

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19 pages, 1317 KiB  
Review
Screening of Mineralogenic and Osteogenic Compounds in Zebrafish—Tools to Improve Assay Throughput and Data Accuracy
Pharmaceuticals 2022, 15(8), 983; https://doi.org/10.3390/ph15080983 - 10 Aug 2022
Cited by 3 | Viewed by 2033
Abstract
Bone disorders affect millions of people worldwide and treatments currently available often produce undesirable secondary effects or have limited efficacy. It is therefore of the utmost interest for patients to develop more efficient drugs with reduced off-target activities. In the long process of [...] Read more.
Bone disorders affect millions of people worldwide and treatments currently available often produce undesirable secondary effects or have limited efficacy. It is therefore of the utmost interest for patients to develop more efficient drugs with reduced off-target activities. In the long process of drug development, screening and preclinical validation have recently gained momentum with the increased use of zebrafish as a model organism to study pathological processes related to human bone disorders, and the development of zebrafish high-throughput screening assays to identify bone anabolic compounds. In this review, we provided a comprehensive overview of the literature on zebrafish bone-related assays and evaluated their performance towards an integration into screening pipelines for the discovery of mineralogenic/osteogenic compounds. Tools available to standardize fish housing and feeding procedures, synchronize embryo production, and automatize specimen sorting and image acquisition/analysis toward faster and more accurate screening outputs were also presented. Full article
(This article belongs to the Special Issue Zebrafish as a Powerful Tool for Drug Discovery 2023)
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Planned Papers

The below list represents only planned manuscripts. Some of these manuscripts have not been received by the Editorial Office yet. Papers submitted to MDPI journals are subject to peer-review.

1. Type: Research article
Title: Canthin-6-one inhibits developmental and tumour-associated angiogenesis in zebrafish and synergises with VEGFR inhibitors


Author(s): Mei Fong Ng, Pei Jean Tan, Denver Desmond Britto, Sy Bing Choi, Norazwana Samat, Dedrick Soon Seng Song, Satoshi Ogawa, Ishwar S.Parhar, Benjamin M Hogan, Jonathan W Astin, Vyomesh Patel, Kazuhide S Okuda
The Corresponding author(s): Kazuhide S Okuda


Affiliation(s):

Cancer Research Malaysia, Selangor, Malaysia

Instittue for Molecular Biosciences, University of Queensland, QLD, Australia

Peter MacCallum Cancer Centre, VIC, Australia

University of Melbourne, VIC, Australia

La Trobe Institute for Molecular Science, La Trobe University, VIC, Australia

University of Auckland, Auckland, New Zealand

Perdana University, Selangor, Malaysia

Monash University, Bandar Sunway, Malaysia


Abstract:

 

Tumor-associated angiogenesis play key roles in tumor growth and cancer metastasis. Consequently, several anti-angiogenic drugs such as sunitinib and axitinib, have been approved for use as anti-cancer therapies. However, majority of these drugs target the vascular endothelial growth factor A (VEGF-A)/vascular endothelial growth factor receptor 2 (VEGFR-2) pathway and have shown mixed outcome, largely due to side effects and development of resistances. In this study, we utilised the Tg(friend leukaemia integration 1 a (fli1a):EGFP)y1 zebrafish transgenic line to screen for novel anti-angiogenic molecules from a library of compounds derived from natural products. From our initial analysis, we identified canthin-6-one, an indole alkaloid, which is able to inhibit zebrafish intersegmental vessel (ISV) and sub-intestinal vessel (SIV) development at concentrations of 20 µM. Further characterisation revealed that treatment of canthin-6-one reduced endothelial cell number within the ISVs at 48 hours post-fertilisation (hpf) in developing zebrafish and inhibited proliferation of human vascular endothelial cells, suggesting that canthin-6-one is likely inhibiting endothelial cell proliferation. Of note, canthin-6-one was found not to inhibit VEGF-A-induced phosphorylation of VEGFR-2 and did not inhibit VEGFA-induced Erk phosphorylation in ISV in vivo, suggesting canthin-6-one is likely inhibiting angiogenesis independent of VEGF-A/VEGFR-2 pathway. Importantly, we found that canthin-6-one was able to inhibit tumor-associated angiogenesis in a zebrafish B16F10 melanoma cell xenograft model and synergised with clinically approved anti-angiogenic therapeutic sunitinib malate. In summary, we show that canthin-6-one exhibits anti-angiogenic properties in both developmental and pathological contexts in zebrafish, independent of the VEGF-A/VEGFR-2 pathway and demonstrate that canthin-6-one may hold value for further development as a novel anti-angiogenic drug.

 

2. Dr. Noelia Fernandez-Castillo, etc.

RBFOX1 is gene with a pleiotropic effect on many psychiatric disorders. We have previously worked with rbfox1 knockout zebrafish and behavioural experiments showed that KO fish display a phenotype mirroring symptoms common to psychiatric disorders hyperactivity, thigmotaxis, and alterations in social behaviour.
We have now investigated whether acute exposure to Fluoxetine, a selective serotonin reuptake inhibitor, can rescue these behavioural alterations observed in rbfox1 knockout zebrafish. We tested several concentrations of fluoxetine and observed that some behaviours were rescued at the higher concentration tested, reestablishing behaviour similar to WT fish. We are currently running new batches of experiments to confirm these results.

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