RNA Therapeutics

A special issue of Biomolecules (ISSN 2218-273X). This special issue belongs to the section "Biomacromolecules: Nucleic Acids".

Deadline for manuscript submissions: 30 June 2024 | Viewed by 5852

Special Issue Editor


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Guest Editor
Department of Cellular and Molecular Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3C, DK-2200 Copenhagen, Denmark
Interests: antisense; drug delivery; antibiotics; peptide nucleic acid; gene targeting
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Special Issue Information

Dear Colleagues,

RNA therapeutics is one of the most rapidly expanding new drug technology platforms, showcasing very promising potential for a broad and increasing variety of indications. This is not least due to a simple generic, rational drug design for indications where a genetic cause has been established and characterized at the sequence level. RNA therapeutics is a broad field covering drugs based on nucleic acids and their analogues and derivatives targeting specific functional RNAs or DNA in the cell based on sequence-specific nucleic acid recognition, or by employing functional nucleic acids (e.g. mRNA of tRNA) as drugs themselves. Historically, the field dates back more than 30 years to when small synthetic antisense oligonucleotides were successfully developed to silence specific genes post transcriptionally at the mRNA level, and were then later used as specific modulators of pre-mRNA splicing. Approval for the first antisense drug (Mipomersen) was obtained by the FDA in 2013. Subsequently, following the discovery of small interfering RNAs (siRNAs/microRNAs) as post transcriptional gene regulators in eukaryotic cells, siRNAs were developed as gene-specific silencing drugs. The first siRNA drug was approved in 2018; overall, more than a dozen RNA therapeutics have within the last ten years been approved for human clinical use by the FDA, and many more are in the pre-clinical and clinical trial pipeline. Significant efforts are also being invested in developing RNA therapeutics for targeted gene editing, although no drugs have yet been approved. 

This Special Issue will focus broadly on new discoveries and developments in RNA therapeutics, such as new targets, chemistries and mode of action principles, and not least on improving in vivo delivery, tissue targeting and the pharmacokinetic/dynamic properties of nucleic acid-based drugs. However, this issue will not cover vector-mediated gene therapy, CRISPR/Cas systems, aptamers or CpG oligonucleotides.

Prof. Dr. Peter E. Nielsen
Guest Editor

Manuscript Submission Information

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Keywords

  • antisense oligonucleotides (ASO)
  • siRNA
  • mRNA new chemistries
  • therapeutic targets/indications
  • cellular delivery/endosomal escape (LNPs/CPPs)
  • in vivo administration/formulation/efficacy
  • tissue targeting/PK/PD

Published Papers (2 papers)

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Research

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15 pages, 2853 KiB  
Article
Effects of Combinations of Untranslated-Region Sequences on Translation of mRNA
by Anna Kirshina, Olga Vasileva, Dmitry Kunyk, Kristina Seregina, Albert Muslimov, Roman Ivanov and Vasiliy Reshetnikov
Biomolecules 2023, 13(11), 1677; https://doi.org/10.3390/biom13111677 - 20 Nov 2023
Cited by 4 | Viewed by 1709
Abstract
mRNA-based therapeutics have been found to be a promising treatment strategy in immunotherapy, gene therapy, and cancer treatments. Effectiveness of mRNA therapeutics depends on the level and duration of a desired protein’s expression, which is determined by various cis- and trans-regulatory [...] Read more.
mRNA-based therapeutics have been found to be a promising treatment strategy in immunotherapy, gene therapy, and cancer treatments. Effectiveness of mRNA therapeutics depends on the level and duration of a desired protein’s expression, which is determined by various cis- and trans-regulatory elements of the mRNA. Sequences of 5′ and 3′ untranslated regions (UTRs) are responsible for translational efficiency and stability of mRNA. An optimal combination of the regulatory sequences allows researchers to significantly increase the target protein’s expression. Using both literature data and previously obtained experimental data, we chose six sequences of 5′UTRs (adenoviral tripartite leader [TPL], HBB, rabbit β-globin [Rabb], H4C2, Moderna, and Neo2) and five sequences of 3′UTRs (mtRNR-EMCV, mtRNR-AES, mtRNR-mtRNR, BioNTech, and Moderna). By combining them, we constructed 30 in vitro transcribed RNAs encoding firefly luciferase with various combinations of 5′- and 3′UTRs, and the resultant bioluminescence was assessed in the DC2.4 cell line at 4, 8, 24, and 72 h after transfection. The cellular data enabled us to identify the best seven combinations of 5′- and 3′UTRs, whose translational efficiency was then assessed in BALB/c mice. Two combinations of 5′- and 3′UTRs (5′Rabb-3′mtRNR-EMCV and 5′TPL-3′Biontech) led to the most pronounced increase in the luciferase amount in the in vivo experiment in mice. Subsequent analysis of the stability of the mRNA indicated that the increase in luciferase expression is explained primarily by the efficiency of translation, not by the number of RNA molecules. Altogether, these findings suggest that 5′UTR-and-3′UTR combinations 5′Rabb-3′mtRNR- EMCV and 5′TPL-3′Biontech lead to high expression of target proteins and may be considered for use in preventive and therapeutic modalities based on mRNA. Full article
(This article belongs to the Special Issue RNA Therapeutics)
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Review

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27 pages, 1519 KiB  
Review
Enabling mRNA Therapeutics: Current Landscape and Challenges in Manufacturing
by Maryam Youssef, Cynthia Hitti, Julia Puppin Chaves Fulber and Amine A. Kamen
Biomolecules 2023, 13(10), 1497; https://doi.org/10.3390/biom13101497 - 09 Oct 2023
Cited by 2 | Viewed by 3708
Abstract
Recent advances and discoveries in the structure and role of mRNA as well as novel lipid-based delivery modalities have enabled the advancement of mRNA therapeutics into the clinical trial space. The manufacturing of these products is relatively simple and eliminates many of the [...] Read more.
Recent advances and discoveries in the structure and role of mRNA as well as novel lipid-based delivery modalities have enabled the advancement of mRNA therapeutics into the clinical trial space. The manufacturing of these products is relatively simple and eliminates many of the challenges associated with cell culture production of viral delivery systems for gene and cell therapy applications, allowing rapid production of mRNA for personalized treatments, cancer therapies, protein replacement and gene editing. The success of mRNA vaccines during the COVID-19 pandemic highlighted the immense potential of this technology as a vaccination platform, but there are still particular challenges to establish mRNA as a widespread therapeutic tool. Immunostimulatory byproducts can pose a barrier for chronic treatments and different production scales may need to be considered for these applications. Moreover, long-term storage of mRNA products is notoriously difficult. This review provides a detailed overview of the manufacturing steps for mRNA therapeutics, including sequence design, DNA template preparation, mRNA production and formulation, while identifying the challenges remaining in the dose requirements, long-term storage and immunotolerance of the product. Full article
(This article belongs to the Special Issue RNA Therapeutics)
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