Editorial Board Members’ Collection Series: High-Resolution Fluorescence Microscopy and Epigenetics

A special issue of Biology (ISSN 2079-7737). This special issue belongs to the section "Biophysics".

Deadline for manuscript submissions: 15 December 2024 | Viewed by 2870

Special Issue Editors


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Guest Editor
Department of Surgical, Medical and Molecular Pathology and Critical Care Medicine, University of Pisa, Via Roma 65, 56126 Pisa, Italy
Interests: fluorescence microscopy; super-resolution microscopy; fluorescent proteins; epigenetics; polycomb proteins; nucleocytoplasmic shuttling

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Guest Editor
Optical Sciences Centre, School of Science, Computing and Engineering Technologies, Swinburne University of Technology, Melbourne, Australia
Interests: biophysics; experimental optical spectroscopy
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

As is widely recognized, chromatin affords a landscape where the activity state of the genome is modulated and perpetuated. Two mechanisms increase the information content of the genome, thereby constituting the epigenome: chemical modifications of DNA and histones and changes in the local compaction state of chromatin. These mechanisms are deeply interleaved, and the result is the hierarchical organization of chromatin across multiple scales shaped by chromatin-acting proteins. Knowledge of the multiscale genome organization and multifaceted gene regulation is still in its infancy. Yet, techniques able to map genomic regions with increasing spatial resolution have made considerable progress in the last two decades. Among others, a crucial contribution was given by high-resolution fluorescence microscopy, particularly in the so-called super-resolution mode. Indeed, several fluorescence imaging techniques are intimately suited to address the meso- and nanoscale of chromatin organization by reporting on functional molecular parameters, such as the chemical identity, the concentrations, the molecular aggregations, the local chromatin topology, and the diffusion/binding processes. Of note, fluorescence microscopy also posited the viewpoint of epigenetic alterations as novel treatment targets in the personalized therapies for several diseases.

In this Special Issue, we welcome original research or review articles related to all aspects of high-resolution fluorescence microscopy applied to investigate epigenetic mechanisms and chromatin remodeling, including studies on DNA methylation, modification of histones, the assembly of transcription machinery, and non-coding RNAs. Ambitiously, this Special Issue will try to collect in the same place (and make them widely available) state-of-the art fluorescence microscopy approaches aimed at investigating the subtle features of the chromatin landscape.

Prof. Dr. Ranieri Bizzarri
Prof. Dr. Andrew Clayton
Guest Editors

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Keywords

  • epigenetics
  • fluorescence microscopy
  • chromatin remodeling
  • histone modifications
  • functional fluorescent probes
  • super-resolution microscopy

Published Papers (1 paper)

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Review

17 pages, 3395 KiB  
Review
On the Advent of Super-Resolution Microscopy in the Realm of Polycomb Proteins
by Irene Nepita, Simonluca Piazza, Martina Ruglioni, Sofia Cristiani, Emanuele Bosurgi, Tiziano Salvadori, Giuseppe Vicidomini, Alberto Diaspro, Marco Castello, Andrea Cerase, Paolo Bianchini, Barbara Storti and Ranieri Bizzarri
Biology 2023, 12(3), 374; https://doi.org/10.3390/biology12030374 - 26 Feb 2023
Cited by 1 | Viewed by 2420
Abstract
The genomes of metazoans are organized at multiple spatial scales, ranging from the double helix of DNA to whole chromosomes. The intermediate genomic scale of kilobases to megabases, which corresponds to the 50–300 nm spatial scale, is particularly interesting, as the 3D arrangement [...] Read more.
The genomes of metazoans are organized at multiple spatial scales, ranging from the double helix of DNA to whole chromosomes. The intermediate genomic scale of kilobases to megabases, which corresponds to the 50–300 nm spatial scale, is particularly interesting, as the 3D arrangement of chromatin is implicated in multiple regulatory mechanisms. In this context, polycomb group (PcG) proteins stand as major epigenetic modulators of chromatin function, acting prevalently as repressors of gene transcription by combining chemical modifications of target histones with physical crosslinking of distal genomic regions and phase separation. The recent development of super-resolution microscopy (SRM) has strongly contributed to improving our comprehension of several aspects of nano-/mesoscale (10–200 nm) chromatin domains. Here, we review the current state-of-the-art SRM applied to PcG proteins, showing that the application of SRM to PcG activity and organization is still quite limited and mainly focused on the 3D assembly of PcG-controlled genomic loci. In this context, SRM approaches have mostly been applied to multilabel fluorescence in situ hybridization (FISH). However, SRM data have complemented the maps obtained from chromosome capture experiments and have opened a new window to observe how 3D chromatin topology is modulated by PcGs. Full article
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