Recent Advances in Fragment-Based Lead Discovery and Design

A special issue of Pharmaceuticals (ISSN 1424-8247). This special issue belongs to the section "Medicinal Chemistry".

Deadline for manuscript submissions: closed (20 April 2023) | Viewed by 2527

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Guest Editor
UMR CNRS 5246 – ICBMS – COSSBA team, Université Lyon 1, 8, avenue Rockefeller, CEDEX 8, 69373 Lyon, France
Interests: drug design, kinases inhibitors, anti-infective agents, compound optimization, organic and organometallic synthesis

Special Issue Information

Dear Colleagues,

For over the past two decades, Fragment-Based Drug Discovery (FBDD) has emerged as a powerful approach for the design and optimization of New Molecular Entities, in both industrial and academic research groups.Many successes have arisen, as illustrated by the FDA-approved drugs vemurafenib (first marketed drug designed by FBDD), venetoclax, erdafitinib and pexidartinib. Many other molecules are actually undergoing clinical studies.The reason for this success rate is that the “fragment approach” appeared to be more efficient than the use of more complex/elaborated molecular structures: more simple molecules can fit more efficiently into the biological target, mainly proteins of therapeutic interests.Numerous biophysical techniques have been developed in parallel to efficiently measure protein–ligand interactions, which is essential information for FBDD, such as Nuclear Magnetic Resonance, Mass Spectrometry, X-ray diffraction, Isothermal Titration Calorimetry, Surface Plasmon Resonance and others.Once the fragments (having high KD) are identified using these methods, a reconstruction step is necessary using growing/linking/merging strategies. The rebuilt complex molecules from molecular fragments better fit to the protein binding site and so, give more efficient ligands/inhibitors, with very low Ki/IC50, thanks to a superadditivity effect. Regarding the growing importance of the FBDD approaches in numerous fields, the Special Issue of Pharmaceuticals “Recent Advances in Fragment-Based Lead Discovery and Design” is perfectly relevant and will allow the reader to discover new advances in this efficient drug design strategy.

Prof. Thierry Lomberget
Guest Editor

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Keywords

  • fragment screening
  • drug design
  • FBDD
  • biophysical techniques
  • Nuclear Magnetic Resonance
  • Mass Spectrometry
  • X-ray diffraction
  • Isothermal Titration Calorimetry
  • hit-to-lead
  • lead optimisation

Published Papers (1 paper)

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Review

24 pages, 15973 KiB  
Review
Implications of Fragment-Based Drug Discovery in Tuberculosis and HIV
by Mohan Krishna Mallakuntla, Namdev S. Togre, Destiny B. Santos and Sangeeta Tiwari
Pharmaceuticals 2022, 15(11), 1415; https://doi.org/10.3390/ph15111415 - 15 Nov 2022
Cited by 4 | Viewed by 1969
Abstract
Tuberculosis (TB) remains a global health problem and the emergence of HIV has further worsened it. Long chemotherapy and the emergence of drug-resistance strains of Mycobacterium tuberculosis as well as HIV has aggravated the problem. This demands urgent the need to develop new [...] Read more.
Tuberculosis (TB) remains a global health problem and the emergence of HIV has further worsened it. Long chemotherapy and the emergence of drug-resistance strains of Mycobacterium tuberculosis as well as HIV has aggravated the problem. This demands urgent the need to develop new anti-tuberculosis and antiretrovirals to treat TB and HIV. The lack of diversity in drugs designed using traditional approaches is a major disadvantage and limits the treatment options. Therefore, new technologies and approaches are required to solve the current issues and enhance the production of drugs. Interestingly, fragment-based drug discovery (FBDD) has gained an advantage over high-throughput screenings as FBDD has enabled rapid and efficient progress to develop potent small molecule compounds that specifically bind to the target. Several potent inhibitor compounds of various targets have been developed using FBDD approach and some of them are under progression to clinical trials. In this review, we emphasize some of the important targets of mycobacteria and HIV. We also discussed about the target-based druggable molecules that are identified using the FBDD approach, use of these druggable molecules to identify novel binding sites on the target and assays used to evaluate inhibitory activities of these identified druggable molecules on the biological activity of the targets. Full article
(This article belongs to the Special Issue Recent Advances in Fragment-Based Lead Discovery and Design)
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