Vegetable Breeding: In the Era of Integrated Omics

A special issue of Horticulturae (ISSN 2311-7524). This special issue belongs to the section "Vegetable Production Systems".

Deadline for manuscript submissions: closed (31 March 2024) | Viewed by 696

Special Issue Editors


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Guest Editor
Department of Horticulture in the College of Agricultural and Environmental Sciences (CAES), University of Georgia (UGA), Tifton, GA 31793-576, USA
Interests: vegetable breeding; genomics; metabolomics; cultivar development; speed breeding

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Guest Editor
CREA Research Center for Vegetable and Ornamental Crops, 84098 Salerno, Italy
Interests: molecular breeding; genomics; GWAS; QTL mapping
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Guest Editor
Indian Council of Agricultural Research–Central Institute of Arid Horticulture (ICAR-CIAH), Bikaner 334006, India
Interests: high-throughput phenomics breeding for stress adaptation
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

Plant breeders are witnessing a continuous evolution of breeding priorities amid population growth, unbalanced diet, climate change, and geopolitical conflicts in leading producing regions. These events have impacted socio-economic developments and the brought breeding community to the center stage of efforts to address these challenges.

Conventionally, vegetable breeders have used interspecific hybridization to introduce novel alleles into the primary genepool from secondary/tertiary genepools. However, linkage-drag is a major challenge associated with this practice, hence breeders have begun to utilize molecular markers to recover desirable alleles during pre-breeding. Additionally, breeders also use double haploidy to accelerate the introgression of desirable alleles. Recently, increased abiotic stresses are impacting crop performances as drought, salinity, and heat stress are occurring frequently, while the emergence of new pathogenic races and corresponding vectors is becoming a significant challenge. Therefore, the application of high-throughput phenotyping methods is necessary in efforts to understand genetic–molecular–physiological factors that trigger stress adaptation. Besides stresses, enhanced nutritional composition is important for fruit quality. Hence, the application of metabolomics is becoming essential in vegetable breeding. The availability of inexpensive genome sequencing and bioinformatics tools has encouraging breeders to utilize these resources, and they have since proven useful in gene discovery, trait prediction and breeding line identification. Overall, genetic gain has increased over the years, but prolonged breeding cycles still remains a big challenge. However, advances in controlled environment agriculture have truncated plant lifecycle and led to develop the LED light-supplemented breeding chambers that can be used to practice speed breeding in order to obtain multiple generations a year.

Considering the usefulness of diverse breeding tools, the deployment of inter-disciplinary techniques should look to manage stresses, improve fruit quality, expedite breeding process and enhance overall cultivar development. In this Special Issue, we seek to provide a platform for the discussion of vegetable breeding. We aim to showcase breeding applications, including phenomics, metabolomics, bioinformatics, transcriptomics/genomics, gene editing (CRISPR-Cas and QTL cloning), and speed breeding, in order to develop climate-resilient vegetables.

Dr. Amol N. Nankar
Dr. Pasquale Tripodi
Dr. Jagadish Rane
Guest Editors

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Keywords

  • integrated omics
  • vegetable breeding
  • speed breeding
  • specialty crops
  • stress adaptation
  • climate resilient vegetables
  • breeding tools
  • genetic gain
  • genomics
  • gene editing
  • metabolomics

Published Papers (1 paper)

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Research

17 pages, 2295 KiB  
Article
Assessment of Balkan Pepper (Capsicum annuum L.) Accessions for Agronomic, Fruit Quality, and Pest Resistance Traits
by Velichka Todorova, Amol N. Nankar, Vinelina Yankova, Ivanka Tringovska and Dima Markova
Horticulturae 2024, 10(4), 389; https://doi.org/10.3390/horticulturae10040389 - 11 Apr 2024
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Abstract
To maintain the continuous genetic variation and increase the genetic gain, appreciable germplasm diversity and its comprehensive characterization is necessary to further utilize gene sources for pre-breeding. The diversity of pepper forms, cultivation traditions and diverse fruit usages are typical for Balkan countries. [...] Read more.
To maintain the continuous genetic variation and increase the genetic gain, appreciable germplasm diversity and its comprehensive characterization is necessary to further utilize gene sources for pre-breeding. The diversity of pepper forms, cultivation traditions and diverse fruit usages are typical for Balkan countries. Considering this rich diversity, 21 pepper accessions from the Balkan region were evaluated for morphological, biochemical, and insect resistance traits during 2018 and 2019 at Maritsa Vegetable Crops Research Institute, Plovdiv, Bulgaria. Among the studied accessions, the highest productivity was observed in pumpkin shape K1115 and kapia type K1081 accessions, with 0.74 kg and 0.70 kg per plant, respectively. Concerning fruit quality, the highest total polyphenols and ferric reducing antioxidant power (FRAP) were observed in pumpkin shape K712 (203.44 mg GAE/100 g FW) and K1103A (11.49 µmol Fe2+/g FW) accessions, respectively. Concerning insect resistance, 38% of studied accessions showed no infestation of green peach aphid. The kapia type K697 accession was seen as the most reliable resistance source, as it was not infested by aphids and had the least thrips (20% on plants) and cotton bollworm (6.67% on plants and 8.34% on fruit) damage. Based on examined traits, accessions were identified for enhanced fruit quality and promising insect resistance and have been included in further pre-breeding efforts. Full article
(This article belongs to the Special Issue Vegetable Breeding: In the Era of Integrated Omics)
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