Next Article in Journal
Phosphorylation of the Regulators, a Complex Facet of NF-κB Signaling in Cancer
Previous Article in Journal
Bacterial-Derived Plant Protection Metabolite 2,4-Diacetylphloroglucinol: Effects on Bacterial Cells at Inhibitory and Subinhibitory Concentrations
Previous Article in Special Issue
Macromolecular Crowding Increases the Affinity of the PHD of ING4 for the Histone H3K4me3 Mark
 
 
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Editorial

Biomolecules from Different Angles

by
Vladimir N. Uversky
1,2
1
Department of Molecular Medicine, Morsani College of Medicine, University of South Florida, Tampa, FL 33612, USA
2
Laboratory of New Methods in Biology, Institute for Biological Instrumentation, Russian Academy of Sciences, Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, 142290 Pushchino, Russia
Biomolecules 2021, 11(1), 14; https://doi.org/10.3390/biom11010014
Submission received: 24 December 2020 / Accepted: 25 December 2020 / Published: 26 December 2020
(This article belongs to the Special Issue 2019 Feature Papers by Biomolecules’ Editorial Board Members)
Special Issue “2019 Feature Papers by Biomolecules’ Editorial Board Members” represents a set of papers based on the results of the research in the laboratories of the Editorial Board Members (EBMs) of Biomolecules focused (a big surprise!) on different aspects of biomolecules. Therefore, this Special Issue is a snapshot of a collective view of Biomolecules on biomolecules. The covered topics range from the description of secondary metabolites produced by fungi [1] to the overview of the phytochemical composition and pharmacological and food applications of Prosopis plants [2], to comparative evaluation of the antiproliferative activity of plant-derived silver nanoparticles synthesized using callus and anthocyanin extracts of purple basil (BC-AgNPs and AE-AgNPs, respectively) [3], to systematic description of the utilization of natural products as a source of antitumor drugs [4], to the analysis of the effects of caffeine and other methylxanthines on Aβ-homeostasis by shifting the α- and β-secretase-based processing of amyloid precursor protein (APP) from the Aβ-producing amyloidogenic to the non-amyloidogenic pathway [5], to the topoisomerase I and radical trapping antioxidant activities of a series of N-alkyl-acridones and N,N′-dialkyl-9,9′-biacridylidenes [6], to the analysis of the effects of phytoalexins in soybeans via synergistic inhibition on α-glucosidase [7], to functional and structural characterization of several important proteins (such as the analysis of the general and genomic DNA-binding specificity of a transcription factor TTHB023 from Thermus thermophilus HB8 [8], investigation of the voltage sensing in protein translocation via the bacterial channel SecYEG [9], and structural characterization of the terminase (packaging protein) pUL15, which is the most conserved among all the Herpes Simplex Virus 1 (HSV1) gene products [10]), to the description of utilization of kinetic transition in amyloid assembly for screening fluorophores for preferential responses to oligomer over fibril formation [11], to the description of the utilization of amyloid fibril biomaterials, designer amyloid cell-penetrating peptides comprised of β-sheet cores derived from naturally occurring protein sequences and designed positively charged and aromatic residues exposed at key residue positions as gene transfer vehicles capable of self-assembling and promoting the DNA condensation and cell internalization [12], to the introduction of the use of phage display system for generation of lamprey monoclonal antibodies, lampribodies, which are the variable lymphocyte receptors (VLRs) consisting of leucine rich repeats (LRRs), whose diversity is generated by stepwise genomic rearrangements of LRR cassettes dispersed throughout the VLRB locus [13], to the description of changes in the N-glycomic profile associated with post-traumatic stress disorder (PTSD) via comparative analysis of the N-glycomic profiles in 543 male Caucasian individuals (299 veterans with PTSD and 244 control subjects) [14], to the analysis of the effect of macromolecular crowding on the functionality of tumor suppressors ING containing a plant homeodomain (PHD) and their ability to interact with the histone H3 trimethylated at lysine 4 (H3K4me3) [15], and to the comparison of the effects of acute, chronic, and intermittent hypoxia on molecular pathways and cellular processes [16]. The breadth of the presented topics serves as a reflection of the wide diversity of the research areas dedicated to biomolecules.

Funding

This research received no external funding.

Conflicts of Interest

The author declares no conflict of interest.

References

  1. Carboue, Q.; Maresca, M.; Herbette, G.; Roussos, S.; Hamrouni, R.; Bombarda, I. Naphtho-Gamma-Pyrones Produced by Aspergillus tubingensis G131: New Source of Natural Nontoxic Antioxidants. Biomolecules 2019, 10, 29. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  2. Sharifi-Rad, J.; Kobarfard, F.; Ata, A.; Ayatollahi, S.A.; Khosravi-Dehaghi, N.; Jugran, A.K.; Tomas, M.; Capanoglu, E.; Matthews, K.R.; Popovic-Djordjevic, J.; et al. Prosopis Plant Chemical Composition and Pharmacological Attributes: Targeting Clinical Studies from Preclinical Evidence. Biomolecules 2019, 9, 777. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  3. Abbasi, B.H.; Nazir, M.; Muhammad, W.; Hashmi, S.S.; Abbasi, R.; Rahman, L.; Hano, C. A Comparative Evaluation of the Antiproliferative Activity against HepG2 Liver Carcinoma Cells of Plant-Derived Silver Nanoparticles from Basil Extracts with Contrasting Anthocyanin Contents. Biomolecules 2019, 9, 320. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  4. Sharifi-Rad, J.; Ozleyen, A.; Boyunegmez Tumer, T.; Oluwaseun Adetunji, C.; El Omari, N.; Balahbib, A.; Taheri, Y.; Bouyahya, A.; Martorell, M.; Martins, N.; et al. Natural Products and Synthetic Analogs as a Source of Antitumor Drugs. Biomolecules 2019, 9, 679. [Google Scholar] [CrossRef] [PubMed]
  5. Janitschke, D.; Nelke, C.; Lauer, A.A.; Regner, L.; Winkler, J.; Thiel, A.; Grimm, H.S.; Hartmann, T.; Grimm, M.O.W. Effect of Caffeine and Other Methylxanthines on Abeta-Homeostasis in SH-SY5Y Cells. Biomolecules 2019, 9, 689. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  6. Krokidis, M.G.; Molphy, Z.; Efthimiadou, E.K.; Kokoli, M.; Argyri, S.M.; Dousi, I.; Masi, A.; Papadopoulos, K.; Kellett, A.; Chatgilialoglu, C. Assessment of DNA Topoisomerase I Unwinding Activity, Radical Scavenging Capacity, and Inhibition of Breast Cancer Cell Viability of N-alkyl-acridones and N,N’-dialkyl-9,9’-biacridylidenes. Biomolecules 2019, 9, 177. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  7. Son, H.U.; Yoon, E.K.; Yoo, C.Y.; Park, C.H.; Bae, M.A.; Kim, T.H.; Lee, C.H.; Lee, K.W.; Seo, H.; Kim, K.J.; et al. Effects of Synergistic Inhibition on alpha-glucosidase by Phytoalexins in Soybeans. Biomolecules 2019, 9, 828. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  8. Shell Cox, J.; Van Dyke, M.W. General and Genomic DNA-Binding Specificity for the Thermus thermophilus HB8 Transcription Factor TTHB023. Biomolecules 2020, 10, 94. [Google Scholar] [CrossRef] [Green Version]
  9. Knyazev, D.G.; Kuttner, R.; Bondar, A.N.; Zimmerman, M.; Siligan, C.; Pohl, P. Voltage Sensing in Bacterial Protein Translocation. Biomolecules 2020, 10, 78. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  10. Thaljeh, L.F.; Rothschild, J.A.; Naderi, M.; Coghill, L.M.; Brown, J.M.; Brylinski, M. Hinge Region in DNA Packaging Terminase pUL15 of Herpes Simplex Virus: A Potential Allosteric Target for Antiviral Drugs. Biomolecules 2019, 9, 603. [Google Scholar] [CrossRef] [Green Version]
  11. Barton, J.; Arias, D.S.; Niyangoda, C.; Borjas, G.; Le, N.; Mohamed, S.; Muschol, M. Kinetic Transition in Amyloid Assembly as a Screening Assay for Oligomer-Selective Dyes. Biomolecules 2019, 9, 539. [Google Scholar] [CrossRef] [Green Version]
  12. Kokotidou, C.; Jonnalagadda, S.V.R.; Orr, A.A.; Vrentzos, G.; Kretsovali, A.; Tamamis, P.; Mitraki, A.A. Designer Amyloid Cell-Penetrating Peptides for Potential Use as Gene Transfer Vehicles. Biomolecules 2019, 10, 7. [Google Scholar] [CrossRef] [Green Version]
  13. Hassan, K.M.A.; Hansen, J.D.; Herrin, B.R.; Amemiya, C.T. Generation of Lamprey Monoclonal Antibodies (Lampribodies) Using the Phage Display System. Biomolecules 2019, 9, 868. [Google Scholar] [CrossRef] [Green Version]
  14. Tudor, L.; Nedic Erjavec, G.; Nikolac Perkovic, M.; Konjevod, M.; Svob Strac, D.; Uzun, S.; Kozumplik, O.; Jovanovic, T.; Lauc, G.; Pivac, N. N-glycomic Profile in Combat Related Post-Traumatic Stress Disorder. Biomolecules 2019, 9, 834. [Google Scholar] [CrossRef] [Green Version]
  15. Palacios, A.; Blanco, F.J. Macromolecular Crowding Increases the Affinity of the PHD of ING4 for the Histone H3K4me3 Mark. Biomolecules 2020, 10, 234. [Google Scholar] [CrossRef] [Green Version]
  16. Saxena, K.; Jolly, M.K. Acute vs. Chronic vs. Cyclic Hypoxia: Their Differential Dynamics, Molecular Mechanisms, and Effects on Tumor Progression. Biomolecules 2019, 9, 339. [Google Scholar] [CrossRef] [Green Version]
Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Share and Cite

MDPI and ACS Style

Uversky, V.N. Biomolecules from Different Angles. Biomolecules 2021, 11, 14. https://doi.org/10.3390/biom11010014

AMA Style

Uversky VN. Biomolecules from Different Angles. Biomolecules. 2021; 11(1):14. https://doi.org/10.3390/biom11010014

Chicago/Turabian Style

Uversky, Vladimir N. 2021. "Biomolecules from Different Angles" Biomolecules 11, no. 1: 14. https://doi.org/10.3390/biom11010014

Note that from the first issue of 2016, this journal uses article numbers instead of page numbers. See further details here.

Article Metrics

Back to TopTop