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Article

RNAi Analysis of Potential Functions of Cyclin B3 in Reproduction of Male Oriental River Prawns (Macrobrachium nipponense)

1
Wuxi Fisheries College, Nanjing Agricultural University, Wuxi 214081, China
2
Key Laboratory of Freshwater Fisheries and Germplasm Resources Utilization, Ministry of Agriculture and Rural Affairs, Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi 214081, China
3
Agriculture and Rural Bureau of Hanjiang District, Yangzhou 225007, China
*
Authors to whom correspondence should be addressed.
Animals 2023, 13(10), 1703; https://doi.org/10.3390/ani13101703
Submission received: 27 March 2023 / Revised: 15 May 2023 / Accepted: 18 May 2023 / Published: 21 May 2023
(This article belongs to the Special Issue Mechanisms of Sex Determination and Reproduction in Aquatic Animals)

Abstract

:

Simple Summary

The rapid gonad reproduction of hatchlings restricts the sustainable development of Macrobrachium nipponense. Thus, it is urgently required to establish an artificial technique to regulate the process of gonad reproduction in M. nipponense. A previous study predicted that Cyclin B3 (CycB3) may perform crucial functions in the regulation of male reproduction in M. nipponense. In the present study, we aimed to investigate the potential roles of CycB3 in the male reproduction of this species. qPCR analysis results suggested that CycB3 was involved in the process of spermiogenesis, oogenesis, and embryogenesis in M. nipponense. RNA interference analysis showed that CycB3 affected the expression of insulin-like androgenic gland hormone and inhibited testis reproduction in M. nipponense. Taken together, these findings suggest that CycB3 plays essential roles in the regulation of male reproduction in M. nipponense, promoting the studies of the regulation of testis reproduction.

Abstract

Cyclin B3 (CycB3) is involved in the metabolic pathway of the cell cycle, playing essential roles in the regulation of cell proliferation and mitosis. CycB3 is also predicted to be involved in the reproduction of male oriental river prawns (Macrobrachium nipponense). In this study, the potential functions of CycB3 in M. nipponense were investigated using quantitative real-time PCR, RNA interference, and histological observations. The full-length DNA sequence of CycB3 in M. nipponense was 2147 base pairs (bp) long. An open reading frame of 1500 bp was found, encoding 499 amino acids. A highly conserved destruction box and two conserved cyclin motifs were found in the protein sequence of Mn-CycB3. Phylogenetic tree analysis revealed that this protein sequence was evolutionarily close to that of CycB3s of crustacean species. Quantitative real-time PCR analysis results suggested that CycB3 was involved in the process of spermiogenesis, oogenesis, and embryogenesis in M. nipponense. RNA interference analysis showed that CycB3 had a positive regulatory relationship with insulin-like androgenic gland hormone (IAG) in M. nipponense. In addition, sperm were rarely observed in the testis of double-stranded CycB3-injected prawns after 14 days of treatment, and sperm abundance was dramatically lower than that in the double-stranded GFP-injected prawns on the same day. This result indicated that CycB3 can regulate the testis reproduction in M. nipponense through inhibiting the IAG expressions. Overall, these results indicated that CycB3 plays essential roles in the regulation of male reproduction in M. nipponense, which may promote the studies of male reproduction in other crustacean species.

1. Introduction

The oriental river prawn (Macrobrachium nipponense) is a commercially important freshwater prawn in China that generates huge economic benefits [1]. It is widely distributed in freshwater and low-salinity estuarine regions. The annual aquaculture production of M. nipponense reached 225,321 tons in 2019, and the main aquaculture regions are Jiangsu, Anhui, and Zhejiang provinces [2]. Both the testis and ovary of M. nipponense reach sexual maturity within 40 days after hatching [3]. The rapid gonad development of hatchlings causes mating and propagation of multiple generations in the same ponds, resulting in prawns with smaller market size [4,5]. Therefore, an artificial technique to regulate the process of male reproduction is urgently needed to maintain the sustainable development of the M. nipponense aquaculture industry.
The eyestalk–androgenic gland–testis endocrine axis is involved in the regulation of gender differentiation and reproduction in male crustaceans [6,7]. The X-organ-sinus gland complex was found in the eyestalk of many crustaceans. It is considered as a principal neuroendocrine complex which can store and release many neurosecretory hormones [8]. These hormones play essential roles in the regulation of reproduction in crustaceans [9,10,11]. In M. nipponense, Jin [12] and Qiao [13] showed that crustacean hyperglycaemic hormone and gonad-inhibiting hormone have regulatory effects on gonad reproduction in M. nipponense.
In male M. nipponense, the ablation of eyestalks stimulates the expression of insulin-like androgenic gland hormone (IAG) [4] and promotes testis development [5]. Meanwhile, the genes have been proven to positively regulate male reproduction in this species, of which the expressions were stimulated after the eyestalk ablations [14,15,16]. Thus, genes up-regulated after eyestalk ablation may affect male reproduction. Previous analysis showed cell cycle as the main metabolic pathway of differentially expressed genes after eyestalk ablation, suggesting its role in male reproduction of M. nipponense [4]. Cyclin B3 (CycB3) was a significantly up-regulated gene after eyestalk ablation, which was enriched in cell cycle, suggesting the potential role of CycB3 in the promotion of male reproduction in this species.
The process of gametogenesis plays a crucial role in the development of gonads in multicellular organisms. Several cell-cycle regulators were identified to regulate the process of gametogenesis, including cyclins (Cycs), cyclin-dependent kinases (CDKs), and cyclin-dependent kinase inhibitors. Cyclins play vital roles in cell proliferation in eukaryotic organisms by regulating the expression of CDKs [17]. In eukaryotic cells, the maturation promotion factor (MPF) can stimulate both mitotic and meiotic cell cycles. Thus, it is considered as a key regulator to affect cell proliferation [18]. MPF is a heterodimer composed of CycB and CDK1 [19,20,21]. CycB is required during cell proliferation, which can activate or inhibit the activities of MPF [22]. This process is strongly related to the cell cycle and is important for CDK1 activation. Three CycB isoforms have been reported in animals (CycB1, CycB2, and CycB3). CycB3 is a mitotic cyclin that shares homology with A- and B-type cyclins. CycB3 was reported to be associated with CDK1 in chickens and fruit flies (Drosophila) [23,24], and it was shown to be involved in both oogenesis [25,26] and spermatogenesis [27].
In this study, quantitative real-time PCR (qPCR), in situ hybridization, RNA interference (RNAi), and histological observations were used to analyse the potential functions of CycB3 in male reproduction of M. nipponense. The results of this study highlighted the functions of CycB3 in M. nipponense and provided a basis for further studies of the mechanisms involved in male reproduction in other crustacean species.

2. Methods and Materials

2.1. Ethics Statement

We were permitted by the Institutional Animal Care and Use Ethics Committee of the Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences (Wuxi, China) to conduct experiments involving M. nipponense (Authorization NO. 20210715004, 15 July 2021). Dapu M. nipponense Breeding Base in Wuxi, China (120°13′44″ E, 31°28′22″ N) provided the prawns during both the reproductive season and non-reproductive season. The non-reproductive season was identified as January, with a water temperature of 13 ± 2 °C and illumination time of ≤12 h, while July was identified as the reproductive season with a water temperature of 30 ± 2 °C and illumination time of ≥16 h. Prior to tissue collection, prawns were maintained in aerated freshwater for 3 days with dissolved oxygen content ≥ 6 mg/L. Tissues were collected after prawns were anesthetized using an ice bath (approximate 2 °C).

2.2. Rapid Amplification of cDNA ends (RACE)

Testis were collected from male M. nipponense to synthesize the template for 3′ cDNA and 5′ cDNA cloning. Previous studies have described the detailed procedures for RACE cloning [28,29]. Briefly, total RNA was extracted from the testis using RNAiso Plus Reagent (Takara Bio Inc., Shiga, Japan). The 3′-Full RACE Core Set Ver.2.0 Kit and the 5′-Full RACE Kit (Takara) were used to synthesize the templates for 3′ cDNA and 5′ cDNA cloning using the extracted total testis RNA. The primers used for Mn-CycB3 cloning (Table 1) were designed via the Primer-BLAST tool in NCBI (http://www.ncbi.nlm.nih.gov/tools/primer-blast/, accessed on 9 November 2021). Verification of the full-length cDNA sequence was conducted using two primer pairs (Table 1). ComputepI/Mwtool (http://ca.expasy.org/tools/pi_tool.html, accessed on 13 November 2021) was used to measure the theoretical isoelectric point and molecular weight of Mn-CycB3 protein. The structural characteristics of Mn-CycB3 were analysed with Blastx and Blastn (http://www.ncbi.nlm.nih.gov/BLAST/, accessed on 15 November 2021) and ORF Finder tool (http://www.ncbi.nlm.nih.gov/gorf/gorf.html, accessed on 15 November 2021). Table 2 provides accession numbers of amino acid sequences from different species used for the construction of the phylogenetic tree. MEGA X was utilized to construct the tree, after which the maximum-likelihood method and 1000 bootstrap replications were applied.

2.3. The qPCR Analysis

The qPCR was performed in the different mature tissues and developmental stages, as well as in the testis and androgenic glands sampled during both the reproductive and non-reproductive seasons, in order to measure the relative mRNA expressions of Mn-CycB3. Fifty male M. nipponense (body weight of 3.45–4.32 g) and fifty female M. nipponense (body weight of 2.54–3.37 g) were used for this analysis. Eyestalks, brains, hearts, hepatopancreas, muscle, gonads, and gills were collected from both male and female prawns. Specimens at different developmental stages were collected from the full-sib population every 5 days during their maturation process. The testis and androgenic glands were collected during both the non-reproductive season and the reproductive season. Tissue samples were collected and pooled together (N = 5), in order to form a biological replicate. Six biological replicates were performed for qPCR analysis. Liquid nitrogen was used to preserve the collected tissues for qPCR analysis.
Previous studies have described the detailed procedures of RNA isolation and cDNA synthesis [28,29]. Briefly, according to the manufacturer’s protocol, the PrimeScript™ RT Reagent Kit (Takara) was employed to synthesize the cDNA template after the total RNA was extracted from each tissue with a UNlQ-10 Column Trizol Total RNA Isolation Kit (Sangon, Shanghai, China), which was then used to determine the expression level by applying the UltraSYBR Mixture (CWBIO, Beijing, China). The Bio-Rad iCycler iQ5 Real-Time PCR System (Bio-Rad, Hercules, CA, USA) was employed to perform the qPCR analyses in the present study. All qPCR reactions were run using three technical replicates. The thermal profile for qPCR was 95 °C for 10 min, followed by 40 cycles of 95 °C for 15 s and 60 °C for 1 min. DEPC-treated water was used to instead the template as a negative control. All primers used for the PCR analysis were listed in Table 1, including the Eukaryotic translation initiation factor 5A (EIF), which was used to normalize the transcript level of the target gene [30]. The amplification efficiencies of the target gene and reference gene were measured, and they were almost the same. The relative mRNA expressions of Mn-CycB3 were calculated using the 2−∆∆CT comparative CT method [31].

2.4. RNAi Analysis

RNAi was used to investigate the potential functions of Mn-CycB3 in male M. nipponense reproduction. Specific RNAi primers were designed with a T7 promoter site using Snap Dragon (http://www.flyrnai.org/cgibin/RNAifind_primers.pl accessed on 18 June 2022), and synthesized into Mn-CycB3 double-stranded RNA (dsCycB3) and GFP dsRNA (dsGFP) (negative control) [32] by using the Transcript Aid™ T7 High Yield Transcription kit (Fermentas, Inc., Waltham, MA, USA).
Six hundred male M. nipponense were collected and randomly divided into two groups. One group was the dsCycB3 group (RNAi), and the other group was the dsGFP group (control) (N = 300). These male prawns were collected at approximately 5 months after hatching and had a body weight of 3.48–4.56 g. The injected dose of dsCycB3 and dsGFP was 4 μg/g according to the description in previous studies [33,34]. The same dose of each was injected into prawns 7 days after the first injection. Androgenic gland samples were collected from prawns in both groups on days 1, 7, and 14 after the first injection. The procedures for tissue collection and qPCR analysis are described above in Section 2.3. Both the Mn-CycB3 and Mn-IAG mRNA expression levels were measured by qPCR to analyse the regulatory relationship between CycB3 and IAG in M. nipponense.

2.5. Histological Observations

The morphological differences in the testis taken from dsCycB3- and dsGFP-injected prawns were measured by histological observation of tissues stained with hematoxylin and eosin (HE). The tissues were fixed in 4% paraformaldehyde prior to histological observations. Previous studies have described the detailed procedures of HE staining [35,36]. Briefly, tissues were dehydrated in varying ethanol concentrations, embedded in paraffin, and sliced to 5 µm thickness using a slicer (Leica, Wetzlar, Germany). The resulting sections were stained with HE for 3–8 min and viewed under an Olympus SZX16 microscope (Olympus Corporation, Tokyo, Japan).

2.6. Statistical Analysis

Data analysis was performed using SPSS Statistics 23.0 (IBM, Armonk, NY, USA). The independent t-test was used to compare data from control and RNAi groups on the same day. Statistical differences were determined by analysis of variance, followed by least significant difference and Duncan’s multiple range tests. Quantitative data were presented as mean ± standard deviation, of which p-values < 0.05 were considered statistically significant.

3. Results

3.1. Sequence Analysis

The full-length DNA sequence of Mn-CycB3 was 2147 base pairs (bp) long, with a 5′ untranslated region of 114 bp and a 3′ untranslated region of 533 bp. The ORF was 1500 bp long and encoded 499 amino acids (Figure 1). The Mn-CycB3 sequence was submitted to NCBI with the accession number OP379747.1. The theoretical isoelectric point and molecular weight of Mn-CycB3 were 9.07 and 57.066 kDa, respectively. The Blastx analysis in NCBI revealed that the protein sequence of Mn-CycB3 shared over 65% identity with the CycB3 protein sequence from other crustacean species, including Penaeus monodon (66.86%), Penaeus japonicus (66.53%), Penaeus chinensis (66.40%), and Procambarus clarkia (65.54%). A highly conserved destruction box was found at aa 73-81. Additionally, two conserved cyclin motifs were found at aa 285–369 and aa 382–463, respectively (Figure 2).

3.2. Phylogenetic Tree Analysis

Ten well-defined protein sequences of CycB3 from other aquatic animals were identified in NCBI using Blastx analysis (Table 2). The evolutionary distance between Mn-CycB3 and the other species was analysed by constructing a condensed phylogenetic tree based on the protein sequences of these CycB3s. The phylogenetic tree contained two main branches consisting crustacean species on one and insect species on the other. The Mn-CycB3 protein sequence clustered in the crustacean branch, and it had the closest evolutionary distance with those of penaeid shrimp species (Figure 3).

3.3. The qPCR Analysis

The qPCR analysis revealed that the Mn-CycB3 mRNA expressions were detected in all tested tissues in the present study, indicating that CycB3 has multiple biological functions in M. nipponense. The Mn-CycB3 mRNA was the highest in the testis of male prawns and ovary of female prawns, and the significant difference was observed between the testis and ovaries with the other tested tissues (p < 0.01). The expressions in the testis and ovary were 202.25-fold and 899.95-fold higher than that found in male muscle tissue, respectively, which had the lowest expression of all of the tested tissues. The Mn-CycB3 mRNA showed higher expressions in the heart and hepatopancreas of male prawns than those of female prawns, while the opposite expression patterns were observed in the muscle, gonads, and gills (p < 0.01). The expression in the eyestalk and brain did not differ significantly between the sexes (p > 0.05) (Figure 4A).
Extremely high expression of Mn-CycB3 mRNA was observed at the cleavage stage during embryonic development, and the level differed significantly from the other tested stages (p < 0.01). No significant differences were detected among the other tested stages (p > 0.05). The Mn-CycB3 mRNA expression level at the cleavage stage was 216.25-fold higher than that at the post-larval 25 stage, which had the lowest expression during the whole developmental process of juvenile prawns. A generally higher expressions of Mn-CycB3 mRNA were detected during the embryonic developmental stages, compared to those of the larval and post-larval developmental stages (Figure 4B).
The expression levels of Mn-CycB3 mRNA were also determined in the testis and androgenic gland between the reproductive season vs. non-reproductive season. The qPCR analysis showed that the expressions of Mn-CycB3 mRNA in the testis and androgenic gland were 4.12-fold and 2.98-folder higher, respectively, during the reproductive season than during the non-reproductive season (p < 0.01) (Figure 5).

3.4. RNAi Analysis

The qPCR analysis revealed that Mn-CycB3 remained at a stable level in the dsGFP-injected prawns and did not differ significantly over time (p > 0.05). However, the Mn-CycB3 expression levels decreased significantly in the dsCycB3-injected prawns at days 7 and 14. The decrease reached 90% compared to the level in dsGFP-injected prawns on the same day (p < 0.01) (Figure 6A). The qPCR analysis also showed that the Mn-IAG expression level decreased with the decrease of Mn-CycB3. The decrease reached > 55% in the dsCycB3-injected prawns at days 7 and 14 compared to the level in dsGFP-injected prawns on the same day (p < 0.01) (Figure 6B).
HE staining revealed morphological differences in the testis between the dsCycB3- and dsGFP-injected prawns. According to the histological observations, three cell types were observed in the testis, including spermatogonium, spermatocyte, and sperm. The shape of spermatogonium is round. The shape of spermatocyte is also round, while it is slightly smaller than that of spermatogonium. The characteristics of sperm are non-flagellar and funnel-shaped sperm. Sperm contained a cone-shaped head part and a spiny part. The cell types in the testis of dsGFP-injected prawns did not differ over time. Sperm were the dominant cells and their abundance was dramatically higher than that of spermatogonia and spermatocytes (Figure 7). In the dsCycB3-injected prawns, the number of sperm decreased over time, and sperm were rarely observed at day 14, while spermatogonia and spermatocytes were the dominant cell types during this period (Figure 7).
CycB3 is involved in the metabolic pathway of the cell cycle, and it plays essential roles during mitosis [37]. It is also involved in the regulation of both oogenesis [25,26] and spermatogenesis [27]. In a previous study, CycB3 expressions were observed to be significantly up-regulated after the ablation of eyestalk from male M. nipponense, and thus CycB3 was predicted to regulate the male reproduction of M. nipponense [4]. In the present study, we further investigated the potential regulatory roles of CycB3 in the reproduction of male M. nipponense.
The Blastx analysis identified over 65% identity between the protein sequence of Mn-CycB3 and the other well-defined CycB3 protein sequences from the other species in NCBI. In addition, some typically conserved domains of CycB3 were observed in the protein sequence of Mn-CycB3, including a highly conserved destruction box and two conserved cyclin motifs. This evidence indicated that the correct Mn-CycB3 sequence was obtained. According to the phylogenetic tree analysis, the protein sequence of Mn-CycB3 was closely related to those of other crustacean species, whereas the evolutionary distance from insect species was dramatically long. More CycB3 sequences from freshwater prawns should be investigated to improve the evolutionary analysis of CycB3.
In humans, CycB3 mRNA was detected in all tested tissues but was significantly abundant in the testis [38]. CycB3 mRNA expression was also reported in some aquatic animals. For example, CycB3 mRNA expression was highest in the gonad of the Pacific oyster (Crassostrea gigas) and it increased with gonad development, indicating that CycB3 was involved in the process of oogenesis and spermatogenesis in this species [26]. CycB3 was also dominantly expressed during spermatogenesis in the Japanese eel (Anguilla japonica) [39]. In the present study, Mn-CycB3 mRNA expression was significantly higher in the testis and ovary of male and female prawns, respectively, compared to the levels in the other tested tissues. This result suggests that CycB3 played essential roles in the process of oogenesis and spermatogenesis in M. nipponense. Furthermore, the Mn-CycB3 mRNA showed higher expression in the testis and androgenic gland taken from the reproductive season than those from the non-reproductive season. Previous studies identified the significant morphological differences in the testis and androgenic gland between the two seasons, with more vigorous tissue development during the reproductive season [40,41]. This evidence confirmed that CycB3 was involved in the process of spermatogenesis in M. nipponense, which is consistent with reports about other species [26,39].
Mn-CycB3 mRNA was detected during the whole developmental process of juvenile prawns, indicating that CycB3 had multiple functions in the promotion of M. nipponense development. However, its expression was generally higher during the embryonic developmental stages than during larval and PL development, which supported the premise that CycB3 regulated the process of embryogenesis in M. nipponense [14,15,16]. Additionally, its expression peaked at the cleavage stage, suggesting that cell proliferation (mitosis) was extremely vigorous during this period.
Knockdown of the expression of CycB3 by RNAi inhibited the process of ovarian development in the silk moth Bombyx mori [25]. However, to the best of our knowledge, RNAi analysis of the functions of CycB3 in male reproduction has not been reported previously for all species. RNAi has been widely used to analyse gene functions in M. nipponense, including male reproduction-related genes [42,43,44]. In the present study, qPCR analysis revealed that dsCycB3 injection resulted in significant decreases of Mn-CycB3 expression at days 7 and 14, indicating that synthesized dsCycB3 can efficiently knockdown the expression of CycB3 in M. nipponense. The decreased Mn-CycB3 expression also led to decreased Mn-IAG expression, indicating that CycB3 positively regulated IAG expression in M. nipponense. Androgenic gland is a special organ, existed in male crustaceans. The androgenic gland and its secreted hormones have been proven to play essential roles in the regulation of male differentiation and reproduction of crustaceans, especially the formation of testis and the secondary male sexual characteristics [45,46,47]. IAG is the main expressed gene in the androgenic gland, which was reported to have positive regulatory roles on male differentiation and development in crustacean species [47,48]. The functions of IAG have been well-identified in crustaceans such as Fenneropenaeus chinensis [49], Scylla paramamosain [50], Lysmata vittata [51], Fenneropenaeus merguiensis [52], and M. nipponense [53]. Knockdown IAG expression by RNAi produced a marked inhibitory effect on the process of spermatogenesis in Macrobrachium rosenbergii [54]. Thus, the positive relationship between CycB3 and IAG suggests that CycB3 has potentially regulatory effects on the reproduction of male M. nipponense. The significant morphological differences were observed in the testis between dsGFP- and dsCycB3-injected prawns, revealed by the histological observations. Sperm were rarely observed at day 14 after dsCycB3 injection, whereas sperm were the dominant cells in the dsGFP-injected prawns on the same day. This result indicated that knockdown of the expression of CycB3 inhibited testis development in M. nipponense. Overall, our data show that CycB3 regulated the testis reproduction by affecting IAG expression in M. nipponense.

4. Conclusions

In conclusion, the present results highlighted the important roles of CycB3 to regulate the process of reproduction in male M. nipponense, as verified by qPCR analysis, RNAi, and histological observations. CycB3 showed the highest expressions in the testis of male prawns and ovaries of female prawns. In addition, higher expressions of CycB3 were observed in the testis and androgenic gland taken from the reproductive season, compared to those of the non-reproductive season. The above results suggested that CycB3 may regulate the gonad reproduction in M. nipponense. RNAi analysis revealed that knockdown of the expressions of CycB3 also leads to the decrease of IAG, and sperm were rarely found at Day 14 after the injection of dsCycB3, which were dramatically lower than those of the dsGFP-injected group on the same day, indicating that CycB3 regulates testis development through inhibiting the IAG expression in this species. This study provided valuable data that can be applied to establish an artificial technique for regulating testis development in M. nipponense.

Author Contributions

Methodology, Z.Z.; Software, W.Z.; Formal analysis, H.Q.; Resources, Y.X.; Writing—original draft, S.J. (Shubo Jin); Writing—review & editing, H.F.; Visualization, Y.W.; Supervision, S.J. (Sufei Jiang); Project administration, Y.G. All authors have read and agreed to the published version of the manuscript.

Funding

This research was supported by grants from Central Public-Interest Scientific Institution Basal Research Fund, CAFS (2023JBFM04 and 2020TD36), the Natural Science Foundation of Jiangsu Province (BK20221207), the seed industry revitalization project of Jiangsu province (JBGS [2021] 118), Jiangsu Agricultural Industry Technology System, the earmarked fund for CARS-48, and New Cultivar Breeding Major Project of Jiangsu Province (PZCZ201745).

Institutional Review Board Statement

The animal study protocol was approved by the Institutional Review Board of Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences (Authorization No. 20210715004, 15 July 2021).

Informed Consent Statement

Not applicable.

Data Availability Statement

The data generated and analyzed during this study are included in this article.

Conflicts of Interest

The authors declare no conflict of interest.

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Figure 1. Nucleotide and deduced amino acid sequence of Mn-CycB3. Both the nucleotide and deduced amino acid sequence are displayed in the 5′–3′ directions. Lowercase letters indicated the 3′ UTR and 5′ UTR, while the open reading frames are shown in capital letters. A single capital letter indicated the amino acid code of the deduced amino acid sequence. The Methionine (ATG) denoted the initiation codon, and the termination codon (TGA) was shown as an asterisk.
Figure 1. Nucleotide and deduced amino acid sequence of Mn-CycB3. Both the nucleotide and deduced amino acid sequence are displayed in the 5′–3′ directions. Lowercase letters indicated the 3′ UTR and 5′ UTR, while the open reading frames are shown in capital letters. A single capital letter indicated the amino acid code of the deduced amino acid sequence. The Methionine (ATG) denoted the initiation codon, and the termination codon (TGA) was shown as an asterisk.
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Figure 2. The similarity identity of amino acid sequences of CycB3 between different species. Black boxes indicate the conserved destruction box. Red boxes indicated the conserved cyclin motifs. The alphabets with black indicate that the amino acids between different species are the same, while the alphabets with the other colours indicate that the amino acids between different species are different.
Figure 2. The similarity identity of amino acid sequences of CycB3 between different species. Black boxes indicate the conserved destruction box. Red boxes indicated the conserved cyclin motifs. The alphabets with black indicate that the amino acids between different species are the same, while the alphabets with the other colours indicate that the amino acids between different species are different.
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Figure 3. Phylogenetic tree of amino acid sequences of CycB3 from various species. M. nipponense was marked by red asterisk.
Figure 3. Phylogenetic tree of amino acid sequences of CycB3 from various species. M. nipponense was marked by red asterisk.
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Figure 4. Expression analysis of the Mn-CycB3 in different mature tissues (A) and developmental stages (B) of M. nipponense by qPCR. The EIF was used to normalize the amount of Mn-CycB3 transcript level. Data are expressed as the mean ± SD (n = 6). Lowercases were used to indicate differences in Mn-CycB3 expression between different samples, while uppercase letters were used to indicate differences in Mn-CycB3 expression between male and female prawns within the same tissue. E, Br, H, He, M, G, and Gi indicate eyestalk, brain, heart, hepatopancreas, muscle, gonad and gill, respectively. CS, BS, GS, NS, FS, PS, GS, L, and PL denote cleavage stage, blastula stage, gastrula stage, nauplius stage, posterior nauplius stage, protozoea stage, zoea stage, larval developmental stage, and post-larval developmental stage, respectively.
Figure 4. Expression analysis of the Mn-CycB3 in different mature tissues (A) and developmental stages (B) of M. nipponense by qPCR. The EIF was used to normalize the amount of Mn-CycB3 transcript level. Data are expressed as the mean ± SD (n = 6). Lowercases were used to indicate differences in Mn-CycB3 expression between different samples, while uppercase letters were used to indicate differences in Mn-CycB3 expression between male and female prawns within the same tissue. E, Br, H, He, M, G, and Gi indicate eyestalk, brain, heart, hepatopancreas, muscle, gonad and gill, respectively. CS, BS, GS, NS, FS, PS, GS, L, and PL denote cleavage stage, blastula stage, gastrula stage, nauplius stage, posterior nauplius stage, protozoea stage, zoea stage, larval developmental stage, and post-larval developmental stage, respectively.
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Figure 5. Expression analysis of the Mn-CycB3 in the testis (A) and androgenic gland (B) of M. nipponense taken from different reproductive season. The EIF was used to normalize the amount of Mn-CycB3 transcript level. Data are expressed as the mean ± SD (n = 6). Lowercases are used to indicate differences in Mn-CycB3 expression between different samples.
Figure 5. Expression analysis of the Mn-CycB3 in the testis (A) and androgenic gland (B) of M. nipponense taken from different reproductive season. The EIF was used to normalize the amount of Mn-CycB3 transcript level. Data are expressed as the mean ± SD (n = 6). Lowercases are used to indicate differences in Mn-CycB3 expression between different samples.
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Figure 6. Expression analysis of Mn-CycB3 (A) and Mn-IAG (B) of M. nipponense after the injection of dsCycB3 and dsGFP. The EIF was used to normalize the amount of Mn-CycB3 transcript level. Data are expressed as the mean ± SD (n = 6). Lowercases are used to indicate differences in gene expression between different days after the injection of dsGFP and dsCycB3. ** (p < 0.01) is used to indicate significant differences in Mn-CycB3 and Mn-IAG expression between the RNAi group and control group on the sample day.
Figure 6. Expression analysis of Mn-CycB3 (A) and Mn-IAG (B) of M. nipponense after the injection of dsCycB3 and dsGFP. The EIF was used to normalize the amount of Mn-CycB3 transcript level. Data are expressed as the mean ± SD (n = 6). Lowercases are used to indicate differences in gene expression between different days after the injection of dsGFP and dsCycB3. ** (p < 0.01) is used to indicate significant differences in Mn-CycB3 and Mn-IAG expression between the RNAi group and control group on the sample day.
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Figure 7. The histological observations of testis of M. nipponense between dsGFP-injected and dsCycB3-injected prawns. SG, SC, and S denote spermatogonium, spermatocyte, and sperm, respectively. Scale bars = 20 μm.
Figure 7. The histological observations of testis of M. nipponense between dsGFP-injected and dsCycB3-injected prawns. SG, SC, and S denote spermatogonium, spermatocyte, and sperm, respectively. Scale bars = 20 μm.
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Table 1. Universal and specific primers used for PCR amplification and qPCR analysis.
Table 1. Universal and specific primers used for PCR amplification and qPCR analysis.
Primer NameNucleotide Sequence (5′→3′)Purpose
CycB3-3GSP1ATGCCGACGACTTTCTTTATATFWD first primer for CycB3 3′ RACE
CycB3-3GSP2GCTGCAGCTGCTCTTTTCTTTAFWD second primer for CycB3 3′ RACE
CycB3-5GSP1CTGTCGCACCTGAAGCTCAACCRVS first primer for CycB3 5′ RACE
CycB3-5GSP2GTGAGGTCACCAAAAGCAGATCRVS second primer for CycB3 5′ RACE
3′RACE OUTTACCGTCGTTCCACTAGTGATTTRVS first primer for 3′ RACE
3′RACE INCGCGGATCCTCCACTAGTGATTTCACTATAGGRVS second primer for 3′ RACE
5′RACE OUTCATGGCTACATGCTGACAGCCTAFWD first primer for 5′ RACE
5′RACE INCGCGGATCCACAGCCTACTGATGATCAGTCGATGFWD second primer for 5′ RACE
CycB3-RTFGAAGGCGTTGACGATTATGACAGFWD primer for CycB3 expression
CycB3-RTRCTCATGCTTTTGGACACTTCAGGRVS primer for CycB3 expression
IAG-RTFCTGACCACACCTACTGAAGACAAFWD primer for IAG expression
IAG-RTRCGTTTTCGATAAGAGGTCAAGCCRVS primer for IAG expression
EIF-FCATGGATGTACCTGTGGTGAAACFWD primer for EIF expression
EIF-RCTGTCAGCAGAAGGTCCTCATTARVS primer for EIF expression
CycB3 RNAi-FTAATACGACTCACTATAGGGTCCGAGACACAACCAACAAAFWD primer for RNAi analysis
CycB3 RNAi-RTAATACGACTCACTATAGGGAGGAGGCTCTCACAAAACGARVS primer for RNAi analysis
Table 2. Sequences used for phylogenetic tree analysis.
Table 2. Sequences used for phylogenetic tree analysis.
SpeciesAccession Number
Macrobrachium nipponense
Penaeus monodonXP_037786045.1
Penaeus japonicusXP_042878469.1
Procambarus clarkiiXP_045600532.1
Homarus americanusXP_042217784.1
Penaeus vannameiXP_027238877.1
Portunus trituberculatusXP_045137868.1
Callinectes arcuatusQPO25106.1
Chionoecetes opilioKAG0693500.1
Hyalella aztecaXP_018006502.1
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Jin, S.; Zhou, Z.; Zhang, W.; Xiong, Y.; Qiao, H.; Gong, Y.; Wu, Y.; Jiang, S.; Fu, H. RNAi Analysis of Potential Functions of Cyclin B3 in Reproduction of Male Oriental River Prawns (Macrobrachium nipponense). Animals 2023, 13, 1703. https://doi.org/10.3390/ani13101703

AMA Style

Jin S, Zhou Z, Zhang W, Xiong Y, Qiao H, Gong Y, Wu Y, Jiang S, Fu H. RNAi Analysis of Potential Functions of Cyclin B3 in Reproduction of Male Oriental River Prawns (Macrobrachium nipponense). Animals. 2023; 13(10):1703. https://doi.org/10.3390/ani13101703

Chicago/Turabian Style

Jin, Shubo, Zhenyu Zhou, Wenyi Zhang, Yiwei Xiong, Hui Qiao, Yongsheng Gong, Yan Wu, Sufei Jiang, and Hongtuo Fu. 2023. "RNAi Analysis of Potential Functions of Cyclin B3 in Reproduction of Male Oriental River Prawns (Macrobrachium nipponense)" Animals 13, no. 10: 1703. https://doi.org/10.3390/ani13101703

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