SARS-CoV-2 Variants: Unraveling Vaccines and Immune Responses

A special issue of Vaccines (ISSN 2076-393X). This special issue belongs to the section "COVID-19 Vaccines and Vaccination".

Deadline for manuscript submissions: closed (31 March 2024) | Viewed by 2451

Special Issue Editor


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Guest Editor
Laboratory of Molecular Immunology, The Rockefeller University, New York City, NY, USA
Interests: infectious diseases; immunological memory; monoclonal antibodies; immunotherapy

Special Issue Information

Dear Colleagues,

The emergence of diverse variants of concern (VOC) has significantly influenced the genomic landscape of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). These variants, characterized by specific mutations, exhibit increased transmissibility, fusogenicity, and the ability to evade both natural infection and vaccine-induced immunity. Notably, variants such as the Omicron VOCs, which emerged in November 2021, demonstrate partial or complete resistance to monoclonal treatments designed for therapeutic or prophylactic purposes. The continuous evolution of Omicron sublineages, such as BA.2, BA.4/5, XBB.1, and XBB.1.5, marked by an increasing number of spike protein mutations, has presented significant challenges in containing the spread of SARS-CoV-2. In response to these challenges, the formulation of bivalent SARS-CoV-2 booster vaccines that incorporate the Omicron BA.1 or BA.5 spike protein, in addition to the ancestral spike, has been proposed as a strategic approach. 

Studying the relationship between SARS-CoV-2 variants, vaccines, and immune responses is of utmost importance to address critical questions and concerns. It allows us to assess the effectiveness of current vaccines against the evolving variants and identify potential areas for improvement. By examining how the virus evolves and how vaccines elicit immune responses, we can develop more targeted and adaptive strategies to combat the virus effectively. 

Furthermore, understanding the dynamics of immune responses to SARS-CoV-2 variants provides insights into the durability and breadth of vaccine-induced protection. This knowledge aids in identifying the correlates of protection and determining the need for booster doses or variant-specific vaccines. By deciphering the immune responses elicited by different variants, we can optimize vaccination strategies to ensure long-term immunity and reduce the risk of breakthrough infections. 

The information gained from unraveling the relationship between SARS-CoV-2 variants, vaccines, and immune responses directly impacts public health decision-making. It enables policymakers, healthcare professionals, and scientists to make informed choices regarding vaccine distribution, prioritization, and potential modifications to vaccination programs. Moreover, this knowledge empowers us to adapt our strategies swiftly in response to emerging viral threats, ensuring a proactive and effective control of COVID-19.

This Special Issue aims to delve into the intricate relationship between SARS-CoV-2 variants, vaccine development, and the immune system. We encourage submissions that explore the genomic, molecular, and structural characteristics of SARS-CoV-2 variants and their implications for vaccine effectiveness. Additionally, we seek studies investigating the dynamics of immune responses, including both humoral and cellular immunity, in the context of these variants.

Potential topics of interest include, but are not limited to:

  1. Comprehensive characterization of emerging SARS-CoV-2 variants and their unique features;
  2. Evaluation of the effectiveness of currently available vaccines against variant strains;
  3. Analysis of the immune response elicited by vaccines targeting SARS-CoV-2 variants;
  4. Investigation of variant-specific immune evasion mechanisms and their impact on breakthrough infections;
  5. Long-term durability and persistence of vaccine-induced immunity against variant strains;
  6. Assessment of alternative vaccination strategies or booster doses to address variant challenges;
  7. Understanding the implications of SARS-CoV-2 variants on global vaccination efforts and public health interventions;
  8. Real-world effectiveness studies of vaccines against variant strains in diverse populations.

We welcome original research articles, comprehensive reviews, and insightful perspective papers that contribute to our understanding of SARS-CoV-2 variants and their implications for vaccines and immune responses. Submissions utilizing diverse methodologies, including genomics, immunology, virology, epidemiology, and clinical research, are encouraged.

By unraveling the intricate relationship between SARS-CoV-2 variants, vaccines, and immune responses, we aim to generate knowledge that can inform public health decision-making, shape vaccination strategies, and enhance our preparedness against emerging viral threats. Together, let us delve into this important research area and pave the way towards a more effective control of COVID-19.

Dr. Zijun Wang
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Vaccines is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • SARS-CoV-2
  • variants
  • vaccines
  • immune responses

Published Papers (2 papers)

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Research

20 pages, 3480 KiB  
Article
Engineered Multivalent Nanobodies Efficiently Neutralize SARS-CoV-2 Omicron Subvariants BA.1, BA.4/5, XBB.1 and BQ.1.1
by Jiali Wang, Bingjie Shi, Hanyi Chen, Mengyuan Yu, Peipei Wang, Zhaohui Qian, Keping Hu and Jianxun Wang
Vaccines 2024, 12(4), 417; https://doi.org/10.3390/vaccines12040417 - 15 Apr 2024
Viewed by 857
Abstract
Most available neutralizing antibodies are ineffective against highly mutated SARS-CoV-2 Omicron subvariants. Therefore, it is crucial to develop potent and broad-spectrum alternatives to effectively manage Omicron subvariants. Here, we constructed a high-diversity nanobody phage display library and identified nine nanobodies specific to the [...] Read more.
Most available neutralizing antibodies are ineffective against highly mutated SARS-CoV-2 Omicron subvariants. Therefore, it is crucial to develop potent and broad-spectrum alternatives to effectively manage Omicron subvariants. Here, we constructed a high-diversity nanobody phage display library and identified nine nanobodies specific to the SARS-CoV-2 receptor-binding domain (RBD). Five of them exhibited cross-neutralization activity against the SARS-CoV-2 wild-type (WT) strain and the Omicron subvariants BA.1 and BA.4/5, and one nanobody demonstrated marked efficacy even against the Omicron subvariants BQ.1.1 and XBB.1. To enhance the therapeutic potential, we engineered a panel of multivalent nanobodies with increased neutralizing potency and breadth. The most potent multivalent nanobody, B13-B13-B13, cross-neutralized all tested pseudoviruses, with a geometric mean of the 50% inhibitory concentration (GM IC50) value of 20.83 ng/mL. An analysis of the mechanism underlying the enhancement of neutralization breadth by representative multivalent nanobodies demonstrated that the strategic engineering approach of combining two or three nanobodies into a multivalent molecule could improve the affinity between a single nanobody and spike, and could enhance tolerance toward escape mutations such as R346T and N460K. Our engineered multivalent nanobodies may be promising drug candidates for treating and preventing infection with Omicron subvariants and even future variants. Full article
(This article belongs to the Special Issue SARS-CoV-2 Variants: Unraveling Vaccines and Immune Responses)
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11 pages, 936 KiB  
Article
Hybrid Immunity from Gam-COVID-Vac Vaccination and Natural SARS-CoV-2 Infection Confers Broader Neutralizing Activity against Omicron Lineage VOCs Than Revaccination or Reinfection
by Sergey V. Kulemzin, Sergey V. Guselnikov, Boris G. Nekrasov, Svetlana V. Molodykh, Irina N. Kuvshinova, Svetlana V. Murasheva, Tatyana N. Belovezhets, Andrey A. Gorchakov, Anton N. Chikaev, Nikolai A. Chikaev, Olga Y. Volkova, Anna A. Yurina, Alexander M. Najakshin and Alexander V. Taranin
Vaccines 2024, 12(1), 55; https://doi.org/10.3390/vaccines12010055 - 06 Jan 2024
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Abstract
SARS-CoV-2 has a relatively high mutation rate, with the frequent emergence of new variants of concern (VOCs). Each subsequent variant is more difficult to neutralize by the sera of vaccinated individuals and convalescents. Some decrease in neutralizing activity against new SARS-CoV-2 variants has [...] Read more.
SARS-CoV-2 has a relatively high mutation rate, with the frequent emergence of new variants of concern (VOCs). Each subsequent variant is more difficult to neutralize by the sera of vaccinated individuals and convalescents. Some decrease in neutralizing activity against new SARS-CoV-2 variants has also been observed in patients vaccinated with Gam-COVID-Vac. In the present study, we analyzed the interplay between the history of a patient’s repeated exposure to SARS-CoV-2 antigens and the breadth of neutralization activity. Our study includes four cohorts of patients: Gam-COVID-Vac booster vaccinated individuals (revaccinated, RV), twice-infected unvaccinated individuals (reinfected, RI), breakthrough infected (BI), and vaccinated convalescents (VC). We assessed S-protein-specific antibody levels and the ability of sera to neutralize lentiviral particles pseudotyped with Spike protein from the original Wuhan variant, as well as the Omicron variants BA.1 and BA.4/5. Individuals with hybrid immunity (BI and VC cohorts) exhibited significantly higher levels of virus-binding IgG and enhanced breadth of virus-neutralizing activity compared to individuals from either the revaccination or reinfection (RV and RI) cohorts. These findings suggest that a combination of infection and vaccination, regardless of the sequence, results in significantly higher levels of S-protein-specific IgG antibodies and the enhanced neutralization of SARS-CoV-2 variants, thereby underscoring the importance of hybrid immunity in the context of emerging viral variants. Full article
(This article belongs to the Special Issue SARS-CoV-2 Variants: Unraveling Vaccines and Immune Responses)
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