Topical Advisory Panel" Collection Series: "State of the Art in Plant Omics Analysis in Separations

A topical collection in Separations (ISSN 2297-8739). This collection belongs to the section "Bioanalysis/Clinical Analysis".

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Editors


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Collection Editor
Department of Viticulture and Enology, Faculty Agriculture, University of Zagreb, 10 000 Zagreb, Croatia
Interests: LC-MS; GC-MS; UHPLC; electrophoresis; SPME; SPE; SLE; proteomics; metabolomics; extractions
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Collection Editor
Faculty of Agriculture, University of Zagreb, Zagreb, Croatia
Interests: plant transcriptomics; plant genomics; method development in plant transcriptomics and genomics

Topical Collection Information

Dear Colleagues,

Plant omics is a recent scientific field consisting of various disciplines, such as plant genomics, transcriptomics, proteomics, metabolomics, etc. The different omics tools and strategies provide greater opportunities to dissect molecular mechanisms and discover key genes, proteins, and metabolites in different plant organisms. Knowledge gathered through a multi-omics approach can help in understanding the response of plants to abiotic and biotic stress, and in the regulation of the relationship between plant metabolism and physiology.

In this Topical Advisory Panel Collection Series, “State of the Art in Plant Omics Analysis”, we welcome original research and review articles on the development and application of analytical methods in the field of plant genomics, transcriptomics, proteomics, metabolomics, and other plant omics.

Dr. Ivana Tomaz
Dr. Darko Preiner
Collection Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the collection website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Separations is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2600 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • proteomics
  • genomics
  • transcriptomics
  • metabolomics

Published Papers (1 paper)

2022

12 pages, 1609 KiB  
Article
Identification and Functional Characterization of the RcFAH12 Promoter from Castor Bean in Arabidopsis thaliana
by Jianjun Di, Guorui Li, Xiaoyu Wang, Fenglan Huang, Yongsheng Chen, Yue Wang, Jiaxin Sun, Chunlin Zhang, Qingbo Zhang, Gang Wang and Lijun Zhang
Separations 2023, 10(1), 2; https://doi.org/10.3390/separations10010002 - 21 Dec 2022
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Abstract
Castor (Ricinus communis L.) seed oil is the commercial source of ricinoleate, a valuable raw material used in many industries. Oleoyl-12-hydroxylase (RcFAH12) is a key enzyme in the biosynthesis of ricinoleate, accumulating nearly 90% of the triacylglycerol in castor seeds. [...] Read more.
Castor (Ricinus communis L.) seed oil is the commercial source of ricinoleate, a valuable raw material used in many industries. Oleoyl-12-hydroxylase (RcFAH12) is a key enzyme in the biosynthesis of ricinoleate, accumulating nearly 90% of the triacylglycerol in castor seeds. Little is known about the transcriptional regulation of RcFAH12. We used rapid amplification of cDNA 5′ ends (5′RACE) to locate the transcription start site (TSS) of RcFAH12, and the sequence of a 2605 bp region, −2506~+99, surrounding the TSS was cloned. We then investigated these regions to promote β-glucuronidase (GUS) expression in transgenic Arabidopsis by the progressive 5′ and 3′ deletions strategies. The GUS staining showed that the GUS accumulation varied in tissues under the control of different deleted fragments of RcFAH12. In addition, the GUS expression driven by the RcFAH12 promoter markedly accumulated in transgenic seeds, which indicated that RcFAH12 might play an important role in the biosynthesis of ricinoleic acid. This study will lay a potential foundation for developing a tissue-specific promoter in oil-seed crops. Full article
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