Plant Adaptation to Their Biotic and Abiotic Environment through the Lens of Secretomics

A special issue of Biomolecules (ISSN 2218-273X). This special issue belongs to the section "Molecular Biology".

Deadline for manuscript submissions: closed (31 July 2023) | Viewed by 15007

Special Issue Editors


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Guest Editor
Agriculture Victoria Research, AgriBio, Center for AgriBioscience, Bundoora, VIC, Australia
Interests: plant-fungal interactions; plant crops; cannabis sativa; milk; proteomics; secretomics; liquid chromatography; electrophoresis; mass spectrometry
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Guest Editor
CNRS/UCBL/INSA/Bayer CropScience Joint Laboratory (UMR5240), Bayer CropScience, 14-20 rue Pierre Baizet, F-69263 Lyon CEDEX, France
Interests: plant proteomics; plant biotechnology; plant physiology; plant biology; plant biodiversity; plant–fungi (Botrytis) interactions
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

Plants must constantly adapt to a wide range of stresses both biotic and abiotic in order to survive, develop, and reproduce in their environment. Current constraints such as increasing temperatures, drought, salinity, high light, along with pest and pathogen attacks, occurring as isolated or combined events, trigger exquisitely tuned responsive mechanisms in plants. Some interactions between plants and microbes—for instance, symbiotic fungi and bacteria—can play a crucial role in helping plants develop resilience and better cope with environmental challenges.

Plant–microbe interactions have evolved to include a wide range of associations from pathogenic to commensal and mutualistic coexistences. Although these various interactions incur different biochemical needs, they all bear in common the exchange of secreted molecules, which enable the interacting partners to engage in a molecular dialogue, associate, alter each other’s structure and function, as well as have an impact on the surrounding environment. The molecules, proteinic (proteins and peptides) and non-proteinic (metabolites, phytohormones, and nucleic acids), mediating these interactions are collectively referred to as the secretome.

Secreted molecules are the hallmark of intercellular communication. Both plants and their associated microorganisms deploy diverse canonical and noncanonical secretion processes (e.g., extracellular vesicles), allowing them to establish and foster their mutualistic associations or to engage in defense mechanisms upon pathogenic invasion. Secreted molecules also allow plants and microbes to sense their environment, for example, to mobilize nutrients, promote symbiosis, and attract beneficial organisms while repelling harmful ones.

How all these secreted molecules are orchestrated, how they function, how they interact, and how they evolve to shape the whole spectrum of interactions between plants and microorganisms in the context of a changing climate constitute a research area of crucial importance. The exploration of these themes will help not only understand the big picture of secretomics in plants and microbes, but also develop effective crop protection strategies and future sustainable agricultural systems that increase productivity whilst reducing environmental impacts.

In this Special Issue, we aim at addressing recent advances and challenges in plant–microbe interactions as well as adaptations of plants to their changing environment through the lens of secretomics. We welcome original research articles, reviews, and communications focusing on topics within this framework.

Dr. Delphine Vincent
Prof. Dr. Dominique Job
Guest Editors

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Keywords

  • Plant Biotic and/or Abiotic Responses
  • Environment Stress
  • Plant–Microbe Interactions
  • Plant Immunity
  • Crop Diseases
  • Microbial Threat to Natural Ecosystems
  • Mutualistic Microbes
  • Symbiotic Microbes
  • Commensal Microbes
  • Endophytes
  • Phytopathogens
  • Effectors
  • Exosomes and Extracellular Vesicles
  • In Vitro/In Vivo Secretomics
  • Bioinformatics and Prediction Tools
  • Biomolecules in Agriculture

Published Papers (3 papers)

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Research

13 pages, 1499 KiB  
Article
Chitosan as an Adjuvant to Enhance the Control Efficacy of Low-Dosage Pyraclostrobin against Powdery Mildew of Rosa roxburghii and Improve Its Photosynthesis, Yield, and Quality
by Cheng Zhang, Qinju Li, Jiaohong Li, Yue Su and Xiaomao Wu
Biomolecules 2022, 12(9), 1304; https://doi.org/10.3390/biom12091304 - 16 Sep 2022
Cited by 11 | Viewed by 1571
Abstract
Powdery mildew is the most serious fungal disease of Rosa roxburghii in Guizhou Province, China. In this study, the control role of chitosan-assisted pyraclostrobin against powdery mildew of R. roxburghii and its influences on the resistance, photosynthesis, yield, quality and amino acids [...] Read more.
Powdery mildew is the most serious fungal disease of Rosa roxburghii in Guizhou Province, China. In this study, the control role of chitosan-assisted pyraclostrobin against powdery mildew of R. roxburghii and its influences on the resistance, photosynthesis, yield, quality and amino acids of R. roxburghii were evaluated. The results indicate that the foliar application of 30% pyraclostrobin suspension concentrate (SC) 100 mg L1 + chitosan 500 mg L1 displayed a superior control potential against powdery mildew, with a control efficacy of 89.30% and 94.58% after 7 d and 14 d of spraying, respectively, which significantly (p < 0.01) exceeded those of 30% pyraclostrobin SC 150 mg L1, 30% pyraclostrobin SC 100 mg L1, and chitosan 500 mg L1. Simultaneously, their co-application could effectively enhance their effect on the resistance and photosynthesis of R. roxburghii leaves compared to their application alone. Meanwhile, their co-application could also more effectively enhance the yield, quality, and amino acids of R. roxburghii fruits compared to their application alone. This work highlights that chitosan can be applied as an effective adjuvant to promote the efficacy of low-dosage pyraclostrobin against powdery mildew in R. roxburghii and improve its resistance, photosynthesis, yield, quality, and amino acids. Full article
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19 pages, 5233 KiB  
Article
The Type III Effectome of the Symbiotic Bradyrhizobium vignae Strain ORS3257
by Nicolas Busset, Djamel Gully, Albin Teulet, Joël Fardoux, Alicia Camuel, David Cornu, Dany Severac, Eric Giraud and Peter Mergaert
Biomolecules 2021, 11(11), 1592; https://doi.org/10.3390/biom11111592 - 28 Oct 2021
Cited by 9 | Viewed by 3150
Abstract
Many Bradyrhizobium strains are able to establish a Nod factor-independent symbiosis with the leguminous plant Aeschynomene indica by the use of a type III secretion system (T3SS). Recently, an important advance in the understanding of the molecular factors supporting this symbiosis has been [...] Read more.
Many Bradyrhizobium strains are able to establish a Nod factor-independent symbiosis with the leguminous plant Aeschynomene indica by the use of a type III secretion system (T3SS). Recently, an important advance in the understanding of the molecular factors supporting this symbiosis has been achieved by the in silico identification and functional characterization of 27 putative T3SS effectors (T3Es) of Bradyrhizobium vignae ORS3257. In the present study, we experimentally extend this catalog of T3Es by using a multi-omics approach. Transcriptome analysis under non-inducing and inducing conditions in the ORS3257 wild-type strain and the ttsI mutant revealed that the expression of 18 out of the 27 putative effectors previously identified, is under the control of TtsI, the global transcriptional regulator of T3SS and T3Es. Quantitative shotgun proteome analysis of culture supernatant in the wild type and T3SS mutant strains confirmed that 15 of the previously determined candidate T3Es are secreted by the T3SS. Moreover, the combined approaches identified nine additional putative T3Es and one of them was experimentally validated as a novel effector. Our study underscores the power of combined proteome and transcriptome analyses to complement in silico predictions and produce nearly complete effector catalogs. The establishment of the ORS3257 effectome will form the basis for a full appraisal of the symbiotic properties of this strain during its interaction with various host legumes via different processes. Full article
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19 pages, 2752 KiB  
Article
Isolation and Characterization of Fungal Endophytes Isolated from Medicinal Plant Ephedra pachyclada as Plant Growth-Promoting
by Ahmed Mohamed Aly Khalil, Saad El-Din Hassan, Sultan M. Alsharif, Ahmed M. Eid, Emad El-Din Ewais, Ehab Azab, Adil A. Gobouri, Amr Elkelish and Amr Fouda
Biomolecules 2021, 11(2), 140; https://doi.org/10.3390/biom11020140 - 22 Jan 2021
Cited by 95 | Viewed by 8744
Abstract
Endophytic fungi are widely present in internal plant tissues and provide different benefits to their host. Medicinal plants have unexplored diversity of functional fungal association; therefore, this study aimed to isolate endophytic fungi associated with leaves of medicinal plants Ephedra pachyclada and evaluate [...] Read more.
Endophytic fungi are widely present in internal plant tissues and provide different benefits to their host. Medicinal plants have unexplored diversity of functional fungal association; therefore, this study aimed to isolate endophytic fungi associated with leaves of medicinal plants Ephedra pachyclada and evaluate their plant growth-promoting properties. Fifteen isolated fungal endophytes belonging to Ascomycota, with three different genera, Penicillium, Alternaria, and Aspergillus, were obtained from healthy leaves of E. pachyclada. These fungal endophytes have varied antimicrobial activity against human pathogenic microbes and produce ammonia and indole acetic acid (IAA), in addition to their enzymatic activity. The results showed that Penicillium commune EP-5 had a maximum IAA productivity of 192.1 ± 4.04 µg mL−1 in the presence of 5 µg mL−1 tryptophan. The fungal isolates of Penicillium crustosum EP-2, Penicillium chrysogenum EP-3, and Aspergillus flavus EP-14 exhibited variable efficiency for solubilizing phosphate salts. Five representative fungal endophytes of Penicillium crustosum EP-2, Penicillium commune EP-5, Penicillium caseifulvum EP-11, Alternaria tenuissima EP-13, and Aspergillus flavus EP-14 and their consortium were selected and applied as bioinoculant to maize plants. The results showed that Penicillium commune EP-5 increased root lengths from 15.8 ± 0.8 to 22.1 ± 0.6. Moreover, the vegetative growth features of inoculated maize plants improved more than the uninoculated ones. Full article
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