Lytic Polysaccharide Monooxygenases: Diversity and Molecular Events

A special issue of Biomolecules (ISSN 2218-273X). This special issue belongs to the section "Enzymology".

Deadline for manuscript submissions: closed (31 December 2021) | Viewed by 14282

Special Issue Editor


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Guest Editor
Department of Geosciences and Natural Resource Management, Faculty of Science, University of Copenhagen, 1958 Copenhagen, Denmark
Interests: plant cell wall degrading enzymes; industrial biotechnology; protein chemistry; lytic polysaccharide monooxygenases

Special Issue Information

Dear Colleagues,

Lytic polysaccharide monooxygenases (LPMOs) are mononuclear copper enzymes that catalyze the oxidative cleavage of glycosidic bonds. They are characterized by two histidine residues that coordinate copper in a configuration termed the Cu-histidine brace. Although first identified in bacteria and fungi, LPMOs have since been found in all biological kingdoms. LPMOs are now included in commercial enzyme cocktails used in industrial biorefineries. This has led to increased process yield due to the synergistic action of LPMOs with glycoside hydrolases. However, the introduction of LPMOs makes control of the enzymatic step in industrial stirred-tank reactors more challenging, and the operational stability of the enzymes is reduced. It is clear that much is still to be learned about the interaction between LPMOs and their complex natural and industrial environments, and fundamental scientific studies are required toward this end. Several atomic-resolution structures have been solved providing detailed information on the Cu-coordination sphere and the interaction with the polysaccharide substrate. However, the molecular mechanisms of LPMOs are still the subject of intense investigation, the key question being how the proteinaceous environment controls the copper cofactor toward activation of the O–O bond in O2 and cleavage of the glycosidic bonds in polysaccharides. This Special Issue will focus on characterization of LPMOs and the molecular events involved in catalysis.

Prof. Katja Salomon Johansen
Guest Editor

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Keywords

  • catalytic mechanism
  • roles in biological
  • structure-function
  • biotechnological application

Published Papers (4 papers)

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Research

15 pages, 1555 KiB  
Article
Protonation State of an Important Histidine from High Resolution Structures of Lytic Polysaccharide Monooxygenases
by Sanchari Banerjee, Sebastian J. Muderspach, Tobias Tandrup, Kristian Erik Høpfner Frandsen, Raushan K. Singh, Johan Ørskov Ipsen, Cristina Hernández-Rollán, Morten H. H. Nørholm, Morten J. Bjerrum, Katja Salomon Johansen and Leila Lo Leggio
Biomolecules 2022, 12(2), 194; https://doi.org/10.3390/biom12020194 - 24 Jan 2022
Cited by 12 | Viewed by 4003
Abstract
Lytic Polysaccharide Monooxygenases (LPMOs) oxidatively cleave recalcitrant polysaccharides. The mechanism involves (i) reduction of the Cu, (ii) polysaccharide binding, (iii) binding of different oxygen species, and (iv) glycosidic bond cleavage. However, the complete mechanism is poorly understood and may vary across different families [...] Read more.
Lytic Polysaccharide Monooxygenases (LPMOs) oxidatively cleave recalcitrant polysaccharides. The mechanism involves (i) reduction of the Cu, (ii) polysaccharide binding, (iii) binding of different oxygen species, and (iv) glycosidic bond cleavage. However, the complete mechanism is poorly understood and may vary across different families and even within the same family. Here, we have investigated the protonation state of a secondary co-ordination sphere histidine, conserved across AA9 family LPMOs that has previously been proposed to be a potential proton donor. Partial unrestrained refinement of newly obtained higher resolution data for two AA9 LPMOs and re-refinement of four additional data sets deposited in the PDB were carried out, where the His was refined without restraints, followed by measurements of the His ring geometrical parameters. This allowed reliable assignment of the protonation state, as also validated by following the same procedure for the His brace, for which the protonation state is predictable. The study shows that this histidine is generally singly protonated at the Nε2 atom, which is close to the oxygen species binding site. Our results indicate robustness of the method. In view of this and other emerging evidence, a role as proton donor during catalysis is unlikely for this His. Full article
(This article belongs to the Special Issue Lytic Polysaccharide Monooxygenases: Diversity and Molecular Events)
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12 pages, 2014 KiB  
Article
Inhibition of LPMOs by Fermented Persimmon Juice
by Radina Tokin, Johan Ørskov Ipsen, Mahesha M. Poojary, Poul Erik Jensen, Lisbeth Olsson and Katja Salomon Johansen
Biomolecules 2021, 11(12), 1890; https://doi.org/10.3390/biom11121890 - 16 Dec 2021
Cited by 3 | Viewed by 2686
Abstract
Fermented persimmon juice, Kakishibu, has traditionally been used for wood and paper protection. This protective effect stems at least partially from inhibition of microbial cellulose degrading enzymes. The inhibitory effect of Kakishibu on lytic polysaccharide monooxygenases (LPMOs) and on a cocktail of cellulose [...] Read more.
Fermented persimmon juice, Kakishibu, has traditionally been used for wood and paper protection. This protective effect stems at least partially from inhibition of microbial cellulose degrading enzymes. The inhibitory effect of Kakishibu on lytic polysaccharide monooxygenases (LPMOs) and on a cocktail of cellulose hydrolases was studied, using three different cellulosic substrates. Dose dependent inhibition of LPMO activity by a commercial Kakishibu product was assessed for the well-characterized LPMO from Thermoascus aurantiacus TaAA9A, and the inhibitory effect was confirmed on five additional microbial LPMOs. The model tannin compound, tannic acid exhibited a similar inhibitory effect on TaAA9A as Kakishibu. It was further shown that both polyethylene glycol and tannase can alleviate the inhibitory effect of Kakishibu and tannic acid, indicating a likely mechanism of inhibition caused by unspecific tannin–protein interactions. Full article
(This article belongs to the Special Issue Lytic Polysaccharide Monooxygenases: Diversity and Molecular Events)
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19 pages, 2358 KiB  
Article
Bioinformatic Analysis of Lytic Polysaccharide Monooxygenases Reveals the Pan-Families Occurrence of Intrinsically Disordered C-Terminal Extensions
by Ketty C. Tamburrini, Nicolas Terrapon, Vincent Lombard, Bastien Bissaro, Sonia Longhi and Jean-Guy Berrin
Biomolecules 2021, 11(11), 1632; https://doi.org/10.3390/biom11111632 - 4 Nov 2021
Cited by 22 | Viewed by 3353
Abstract
Lytic polysaccharide monooxygenases (LPMOs) are monocopper enzymes secreted by many organisms and viruses. LPMOs catalyze the oxidative cleavage of different types of polysaccharides and are today divided into eight families (AA9–11, AA13–17) within the Auxiliary Activity enzyme class of the CAZy database. LPMOs [...] Read more.
Lytic polysaccharide monooxygenases (LPMOs) are monocopper enzymes secreted by many organisms and viruses. LPMOs catalyze the oxidative cleavage of different types of polysaccharides and are today divided into eight families (AA9–11, AA13–17) within the Auxiliary Activity enzyme class of the CAZy database. LPMOs minimal architecture encompasses a catalytic domain, to which can be appended a carbohydrate-binding module. Intriguingly, we observed that some LPMO sequences also display a C-terminal extension of varying length not associated with any known function or fold. Here, we analyzed 27,060 sequences from different LPMO families and show that 60% have a C-terminal extension predicted to be intrinsically disordered. Our analysis shows that these disordered C-terminal regions (dCTRs) are widespread in all LPMO families (except AA13) and differ in terms of sequence length and amino-acid composition. Noteworthily, these dCTRs have so far only been observed in LPMOs. LPMO-dCTRs share a common polyampholytic nature and an enrichment in serine and threonine residues, suggesting that they undergo post-translational modifications. Interestingly, dCTRs from AA11 and AA15 are enriched in redox-sensitive, conditionally disordered regions. The widespread occurrence of dCTRs in LPMOs from evolutionarily very divergent organisms, hints at a possible functional role and opens new prospects in the field of LPMOs. Full article
(This article belongs to the Special Issue Lytic Polysaccharide Monooxygenases: Diversity and Molecular Events)
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12 pages, 1976 KiB  
Article
Lytic Polysaccharide Monooxygenases as Chitin-Specific Virulence Factors in Crayfish Plague
by Federico Sabbadin, Bernard Henrissat, Neil C. Bruce and Simon J. McQueen-Mason
Biomolecules 2021, 11(8), 1180; https://doi.org/10.3390/biom11081180 - 9 Aug 2021
Cited by 12 | Viewed by 2703
Abstract
The oomycete pathogen Aphanomyces astaci, also known as “crayfish plague”, is an obligate fungal-like parasite of freshwater crustaceans and is considered responsible for the ongoing decline of native European crayfish populations. A. astaci is thought to secrete a wide array of effectors [...] Read more.
The oomycete pathogen Aphanomyces astaci, also known as “crayfish plague”, is an obligate fungal-like parasite of freshwater crustaceans and is considered responsible for the ongoing decline of native European crayfish populations. A. astaci is thought to secrete a wide array of effectors and enzymes that facilitate infection, however their molecular mechanisms have been poorly characterized. Here, we report the identification of AA15 lytic polysaccharide monooxygenases (LPMOs) as a new group of secreted virulence factors in A. astaci. We show that this enzyme family has greatly expanded in A. astaci compared to all other oomycetes, and that it may facilitate infection through oxidative degradation of crystalline chitin, the most abundant polysaccharide found in the crustacean exoskeleton. These findings reveal new roles for LPMOs in animal–pathogen interactions, and could help inform future strategies for the protection of farmed and endangered species. Full article
(This article belongs to the Special Issue Lytic Polysaccharide Monooxygenases: Diversity and Molecular Events)
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