Biomolecular Electronics II

A special issue of Biomolecules (ISSN 2218-273X).

Deadline for manuscript submissions: closed (31 August 2023) | Viewed by 5005

Special Issue Editors


E-Mail Website
Guest Editor
Biodesign Institute, Arizona State University, Tempe, AZ, USA
Interests: single-molecule measurements; charge transport in proteins; electron tunneling; quantum effects in biology; protein electronics
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
Department of Chemical and Biological Physics, Weizmann Institute of Science, Rehovot 76100, Israel
Interests: charge transport data analysis

E-Mail Website
Guest Editor
Department of Chemistry, Faculty of Mathematical, Natural & Engineering Sciences, King's College London, Britannia House, 7 Trinity St, London SEi 1DB, UK
Interests: biomolecular electronics; single-protein electronics; biological charge transport

Special Issue Information

Dear Colleagues,

Following a very successful first run, we are pleased to announce the launch of a second edition of a Special Issue titled “Biomolecular Electronics II”.

DNA-based electronics has become quite advanced, with a good agreement between theory and experiment in some cases and sophisticated proposals for self-assembled devices based on DNA origami. The same is not true of proteins, where there seems to be no agreement at all between theories based on the coupling of redox centers by electron tunneling and molecular device measurements in which proteins are contacted by electrodes. In the latter case, there are reports of nS conductance over distances of many nm. Multilayers of protein appear to conduct as well as monolayers and large conductances have been observed in long filaments. Strikingly, bacterial pili have been shown to have conductivities that can exceed s/m. Even redox-active proteins, which should be textbook examples of Marcus-like hopping transport, have been measured as having temperature-independent conductances.

Long-range, temperature-independent transport would appear to require quantum coherence, which seems unlikely in a water bath at 300K. However, if these systems are not quantum coherent, how can we accommodate the reports of electron spin polarization in transport through chiral proteins?

One focus of this Special Issue of Biomolecules is examining these fundamental problems, or at least exposing them to a wider audience. However, the technological implications of biomolecular electronics are far-reaching. This is particularly true for the simpler case of DNA. DNA "circuits" are one example; sequencing by means of electron tunneling is another. As we approach an age where VLSI and nanotechnology merge with molecular medicine and biology based on massive data sets, this field will become central in the integration of computing and biology. 

Prof. Dr. Stuart Lindsay
Prof. Dr. Ayelet Vilan
Prof. Dr. Ismael Diéz-Pérez
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Biomolecules is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Published Papers (2 papers)

Order results
Result details
Select all
Export citation of selected articles as:

Research

15 pages, 2940 KiB  
Article
Charge Transport across Proteins inside Proteins: Tunneling across Encapsulin Protein Cages and the Effect of Cargo Proteins
by Riccardo Zinelli, Saurabh Soni, Jeroen J. L. M. Cornelissen, Sandra Michel-Souzy and Christian A. Nijhuis
Biomolecules 2023, 13(1), 174; https://doi.org/10.3390/biom13010174 - 13 Jan 2023
Cited by 3 | Viewed by 2918
Abstract
Charge transport across proteins can be surprisingly efficient over long distances—so-called long-range tunneling—but it is still unclear as to why and under which conditions (e.g., presence of co-factors, type of cargo) the long-range tunneling regime can be accessed. This paper describes molecular tunneling [...] Read more.
Charge transport across proteins can be surprisingly efficient over long distances—so-called long-range tunneling—but it is still unclear as to why and under which conditions (e.g., presence of co-factors, type of cargo) the long-range tunneling regime can be accessed. This paper describes molecular tunneling junctions based on an encapsulin (Enc), which is a large protein cage with a diameter of 24 nm that can be loaded with various types of (small) proteins, also referred to as “cargo”. We demonstrate with dynamic light scattering, transmission electron microscopy, and atomic force microscopy that Enc, with and without cargo, can be made stable in solution and immobilized on metal electrodes without aggregation. We investigated the electronic properties of Enc in EGaIn-based tunnel junctions (EGaIn = eutectic alloy of Ga and In that is widely used to contact (bio)molecular monolayers) by measuring the current density for a large range of applied bias of ±2.5 V. The encapsulated cargo has an important effect on the electrical properties of the junctions. The measured current densities are higher for junctions with Enc loaded with redox-active cargo (ferritin-like protein) than those junctions without cargo or redox-inactive cargo (green fluorescent protein). These findings open the door to charge transport studies across complex biomolecular hierarchical structures. Full article
(This article belongs to the Special Issue Biomolecular Electronics II)
Show Figures

Figure 1

12 pages, 4461 KiB  
Article
Mapping DNA Conformations Using Single-Molecule Conductance Measurements
by Mashari Alangari, Busra Demir, Caglanaz Akin Gultakti, Ersin Emre Oren and Joshua Hihath
Biomolecules 2023, 13(1), 129; https://doi.org/10.3390/biom13010129 - 08 Jan 2023
Cited by 2 | Viewed by 1634
Abstract
DNA is an attractive material for a range of applications in nanoscience and nanotechnology, and it has recently been demonstrated that the electronic properties of DNA are uniquely sensitive to its sequence and structure, opening new opportunities for the development of electronic DNA [...] Read more.
DNA is an attractive material for a range of applications in nanoscience and nanotechnology, and it has recently been demonstrated that the electronic properties of DNA are uniquely sensitive to its sequence and structure, opening new opportunities for the development of electronic DNA biosensors. In this report, we examine the origin of multiple conductance peaks that can occur during single-molecule break-junction (SMBJ)-based conductance measurements on DNA. We demonstrate that these peaks originate from the presence of multiple DNA conformations within the solutions, in particular, double-stranded B-form DNA (dsDNA) and G-quadruplex structures. Using a combination of circular dichroism (CD) spectroscopy, computational approaches, sequence and environmental controls, and single-molecule conductance measurements, we disentangle the conductance information and demonstrate that specific conductance values come from specific conformations of the DNA and that the occurrence of these peaks can be controlled by controlling the local environment. In addition, we demonstrate that conductance measurements are uniquely sensitive to identifying these conformations in solutions and that multiple configurations can be detected in solutions over an extremely large concentration range, opening new possibilities for examining low-probability DNA conformations in solutions. Full article
(This article belongs to the Special Issue Biomolecular Electronics II)
Show Figures

Figure 1

Back to TopTop