Next Article in Journal
Emerging Trends in the Use of Topical Antifungal-Corticosteroid Combinations
Next Article in Special Issue
Morphological and Phylogenetic Analyses Reveal Four New Species of Acrodictys (Acrodictyaceae) in China
Previous Article in Journal
AGC/AKT Protein Kinase SCH9 Is Critical to Pathogenic Development and Overwintering Survival in Magnaporthe oryzae
Previous Article in Special Issue
Colletotrichum Species Associated with Anthracnose Disease of Watermelon (Citrullus lanatus) in China
 
 
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Article

Diversity and Distribution of Calonectria Species from Plantation and Forest Soils in Fujian Province, China

1
Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0028, South Africa
2
Research Institute of Fast-Growing Trees (RIFT), Chinese Academy of Forestry (CAF), Zhanjiang 524022, China
*
Author to whom correspondence should be addressed.
J. Fungi 2022, 8(8), 811; https://doi.org/10.3390/jof8080811
Submission received: 2 July 2022 / Revised: 23 July 2022 / Accepted: 25 July 2022 / Published: 31 July 2022

Abstract

:
To meet the growing demand for wood and pulp products, Eucalyptus plantations have expanded rapidly during the past two decades, becoming an integral part of the southern China landscape. Leaf blight caused by various Calonectria spp., is a serious threat to these plantations. In order to explore the diversity and distribution of Calonectria spp. in Fujian Province soils, samples were collected in Eucalyptus plantations and adjacent plantings of Cunninghamia lanceolata, Phyllostachys heterocycle and Pinus massoniana as well as in natural forests. Three hundred and fifty-three Calonectria isolates were recovered from soil samples and they were identified based on a comparison of multilocus DNA sequence data for the act (actin), cmdA (calmodulin), his3 (histone H3), rpb2 (the second largest subunit of RNA polymerase), tef1 (translation elongation factor 1-alpha) and tub2 (β-tubulin) gene regions, as well as morphological characteristics. Six known taxa including Calonectria aconidialis, Ca. hongkongensis, Ca. ilicicola, Ca. kyotensis, Ca. pacifica, Ca. pseudoreteaudii and one novel species described here as Ca. minensis sp. nov. were identified. Of these, Ca. aconidialis and Ca. kyotensis were the most prevalent species, and found in eight and seven sites, and four and five forest types, respectively. Calonectria spp. were most abundant in soils from Eucalyptus stands, followed by P. heterocycle and natural forests. Relatively few species were found in the soils associated with Cunninghamia lanceolata and Pinus massoniana. The abundance of known Calonectria spp. suggests that these fungi have been relatively well sampled in Fujian. The results are also consistent with the fact that most Calonectria diseases are found on Angiosperm as opposed to Gymnosperm plants.

1. Introduction

Species of Eucalyptus are the most important trees used to establish plantations in the tropics and Southern Hemisphere, where they provide substantial resources for the global fibre market [1]. These trees were first introduced into China as ornamentals in 1890 and plantations of Eucalyptus spp. had reached 5.46 million hm2 by 2018 [1]. Plantations of these trees are mainly distributed in 11 provinces of China, and over 75% can be found in the Guangxi, Guangdong, Yunnan and Fujian Provinces of southern China [1]. The Eucalyptus plantations in China have been established with a relatively narrow genetic base and consequently many disease problems, caused by a variety of pathogens, have emerged as threats to their sustainability [2,3,4,5,6].
Among the diseases threatening Eucalyptus plantations, leaf blight caused by species of Calonectria De Not. has become a major constraint in southern China [4,7,8,9,10]. Symptoms of infection are characterised by water-soaked spots on leaves in the lower and middle parts of the tree crowns. These coalesce and gradually develop into extended necrotic areas, which result in blight and often severe defoliation [9]. In China, Calonectria Leaf Blight (CLB) has been observed in Eucalyptus plantations in Fujian, Guangdong, Guangxi, Hainan and Yunnan Provinces [4,7,9,10,11]. This is similar to the situation in Australia, Brazil, Indonesia, Thailand and Vietnam where Eucalyptus plantations have also suffered significant damage due to CLB [12,13,14,15,16].
The genus Calonectria includes many aggressive plant pathogens. These species are extensively distributed particularly in sub-tropical and tropical regions of the world, and they have a wide host range including more than 335 plant species [17]. Calonectria species are generally considered as soil-borne fungi and they can survive in the soil for extended periods due to their thick-walled microsclerotia [17].
A recent taxonomic revision of Calonectria by Liu and co-authors [18] accepted 120 species. Of these, 65 have been reported from soils samples; the remaining species are known from infections on plant tissues [10,18,19,20,21,22]. To date, 27 species of Calonectria have been recorded in China, 18 of which have been isolated from soil samples [4,7,10,11,18,21,23,24,25,26].
Plantations of Eucalyptus spp. are commonly established alongside those of Cunninghamia lanceolata, Phyllostachys heterocycle and Pinus massoniana and can also be in mixed plantings in the Fujian Province (Figure 1). In recent years, leaf blight has become a serious threat to Eucalyptus plantations in this province [7,8]. Calonectria species including Ca. crousiana, Ca. eucalypti, Ca. fujianensis, Ca. pauciromosa and Ca. pseudoreteaudii [7,8,18] have been isolated from diseased Eucalyptus tissues and are regarded as the important causal agents of CLB in Fujian. Calonectria infections initially arise from inoculum in the soil but very little is known regarding the species diversity and distribution of these fungi in Fujian soils. The aim of this study was thus to determine the identity and distribution of Calonectria spp. from a wide variety of soils in Fujian, with a particular focus on Eucalyptus spp. but also including other trees that are found in the area.

2. Materials and Methods

2.1. Sample Collection and Fungal Isolation

Soil samples were collected from Eucalyptus plantations and adjacent plantings, including those of Cunninghamia lanceolata, Phyllostachys heterocycle and Pinus massoniana as well as in natural forests (Figure 1). These plantations and forests were distributed in nine counties or districts in five regions of Fujian Province (one site in Nanping Region, two sites in Fuzhou Region, two sites in Sanming Region, three sites in Longyan Region, one site in Zhangzhou Region) of southern China (Figure 2). These forests typically have thick layers of leaf litter, which was removed before collecting soil samples from the upper 0–20 cm of the humid soil profile. Between three and 37 soil samples (Table 1) were collected randomly at each site. The soil samples were placed in re-sealable plastic bags to maintain moisture and transported to the laboratory for further study.
Soil samples were placed in plastic cups and moistened using distilled water. Medicago sativa (alfalfa) seeds were surface-disinfested in 75% ethanol for 30 s and scattered onto the surface of the moistened soil to bait for Calonectria spp. as described by Crous [17]. After eight to ten days at 25 °C, conidiophores typical of Calonectria spp. were observed with a Zeiss Stemi 2000C dissection microscope on the germinating alfalfa plants. Conidial masses were transferred to 2% MEA (Malt Extract Agar) using a sterile needle. After 12 h of incubation at 25 °C, single hyphal tips were transferred to fresh MEA plates using a sterile needle and these cultures were incubated at 25 °C for seven days. Cultures were sorted based on their morphological characteristics and one to five isolates were retained for each of the soil samples.
Cultures were deposited in the Culture Collection (CSF) at the Research Institute of Fast-growing Trees (RIFT) (previous institution: China Eucalypt Research Centre, CERC), Chinese Academy of Forestry (CAF), ZhanJiang, Guangdong Province, China. Representative isolates have also been maintained in the China General Microbiological Culture Collection Centre (CGMCC), Beijing, China. Dried specimens were deposited in the Mycological Fungarium of the Institute of Microbiology, Chinese Academy of Sciences (HMAS), Beijing, China.

2.2. DNA Extraction, PCR Amplifications and Sequencing

Mycelium was collected from axenic cultures grown on MEA for 5–7 days using a sterilised scalpel. Genomic DNA was extracted from the cultures using the CTAB method “5” described by Van Burik et al. [27]. Partial gene sequences were determined for the actin (act), calmodulin (cmdA), histone H3 (his3), the second largest subunit of RNA polymerase (rpb2), translation elongation factor 1-alpha (tef1) and β-tubulin (tub2) regions. Primer pairs ACT-512F/ACT-783R, CAL-228F/CAL-2Rd, CYLH3F/CYLH3R, fRpb2-5F/fRpb2-7cR, EF1-728F/EF2 and T1/CYLTUB1R [18] were used to amplify the six gene regions, respectively.
The PCR reaction mixtures contained 17.5 μL TopTaqTM Master Mix, 1 μL of each primer (10 mM), 2 μL DNA sample and RNase-Free H2O to a final volume of 35 μL. The amplifications were conducted under conditions described by Liu and co-authors [18]. All PCR products were sequenced in both directions using the same primers used for amplification. Raw sequences were inspected and manually corrected in Geneious v. 9.1.4 (Biomatters, Auckland, New Zealand) [28]. All sequences generated in this study were submitted to GenBank (http://www.ncbi.nlm.nih.gov; accessed on 24 July 2022) (Table 2, Appendix A Table A1).

2.3. Phylogenetic Analyses

To obtain the preliminary identification of the isolates, a standard nucleotide BLAST search was conducted using sequences of the six (act, cmdA, his3, rpb2, tef1 and tub2) gene regions. Furthermore, sequences obtained in this study (Table 2) and sequences of other phylogenetically closely related Calonectria species downloaded from NCBI (http://www.ncbi.nlm.nih.gov; accessed on 24 July 2022) (Table 3) were used in the analyses. Sequence alignments were conducted online with MAFFT v. 7 (Suita, Janpan) [29] and were manually adjusted in MEGA v. 6.0.5 software (Auckland, New Zealand) [30] when necessary. The final alignments used in phylogenetic analyses were submitted to TreeBASE (http://treebase.org; accessed on 3 October 2021).
Genotypes of all the isolates were determined based on the sequences for the six gene regions. Representative isolates for all the genotypes were selected for the phylogenetic analyses. All the isolates of the novel species were used in the analyses. Maximum Parsimony (MP) and Maximum Likelihood (ML) approaches were used for phylogenetic analyses. The sequence datasets for the six individual gene regions and a concatenated dataset for those regions were used to determine the phylogenetic relatedness of all the isolates. PAUP v. 4.0 b10 [31] was used to perform the MP analyses, and PhyML v. 3.0 [32] was applied to conduct the ML analyses. A partition homogeneity test (PHT) [33] was performed to assess whether the datasets for the six gene regions could be combined.
For MP analyses, all characters were unordered and equally weighted. Gaps were regarded as fifth character and phylogenetic trees were obtained using a heuristic tree search criterion including 1000 random stepwise additions and tree-bisection-reconstruction (TBR) branch swapping. Branches of zero-length were collapsed. Supports for tree-branching points were determined using bootstrap analyses with 1000 replicates [34]. Tree length (TL), retention index (RI), consistency index (CI), rescaled consistency indexes (RC) and homoplasy index (HI) (Table 4) were calculated for parsimony trees. For ML analyses, the best substitution model for each dataset was determined using JModeltest 2.1.7 [35]. Sequence data for two isolates of Curvicladiella cignea (CBS 109167 and CBS 109168) were used as outgroup taxa (Table 3).
Table 3. Isolates from other studies and used in the phylogenetic analyses.
Table 3. Isolates from other studies and used in the phylogenetic analyses.
Code
B a
SpeciesIsolates No. b,cOther Collection
Number b
SubstrateArea of OccurrenceCollectorGenBank accession No. dReferences
act; cmdA; his3;
rpb2; tef1; tub2
B1Calonectria
acaciicola
CMW 47173TCBS 143557Soil
(Acacia auriculiformis
plantation)
Do Luong, Nghe An,
Vietnam
N.Q. Pham and
T.Q. Pham
MT334933; MT335160; MT335399;
MT412474; MT412690; MT412930
[16,18]
CMW 47174CBS 143558Soil (A. auriculiformis plantation)Do Luong, Nghe An,
Vietnam
N.Q. Pham and
T.Q. Pham
MT334934; MT335161; MT335400;
MT412475; MT412691; MT412931
[16,18]
B2Ca. acicolaCMW 30996TPhoenix canariensisNorthland,
New Zealand
H. PearsonMT334935; MT335162; MT335401;
MT412476; MT412692; MT412932
[18,36,37]
CBS 114812CMW 51216P. canariensisNorthland,
New Zealand
H. PearsonMT334936; MT335163; MT335402;
MT412477; MT412693; MT412933
[18,36,37]
B3Ca. aciculataCERC 5342TCBS 142883;
CMW 47645
Eucalyptus urophylla ×
E. grandis
Yunnan,
China
S.F. Chen and
J.Q. Li
MT334937; MT335164; MT335403;
MT412478; MT412694; MT412934
[4,18]
B4Ca. aconidialisCMW 35174TCBS 136086;
CERC 1850
Soil
(Eucalyptus plantation)
Hainan,
China
X. Mou and
S.F. Chen
MT334938; MT335165; MT335404;
MT412479; MT412695; N/A e
[11,18]
CMW 35384CBS 136091;
CERC 1886
Soil
(Eucalyptus plantation)
Hainan,
China
X. Mou and
S.F. Chen
MT334939; MT335166; MT335405;
N/A; MT412696; N/A
[11,18]
B5Ca. aeknauliensisCMW 48253TCBS 143559Soil
(Eucalyptus plantation)
Aek Nauli,
North Sumatra,
Indonesia
M.J. Wingfield MT334953; MT335180; MT335419;
MT412486; MT412710; N/A
[16,18]
CMW 48254CBS 143560Soil
(Eucalyptus plantation)
Aek Nauli,
North Sumatra,
Indonesia
M.J. Wingfield MT334954; MT335181; MT335420;
MT412487; MT412711; N/A
[16,18]
B8Ca. asiaticaCBS 114073TCMW 23782;
CPC 3900
Debris (leaf litter)Prathet Thai,
Thailand
N.L.
Hywel-Jones
GQ280428; AY725741; AY725658;
N/A; AY725705; AY725616
[23,37]
B10Ca. australiensisCMW 23669TCBS 112954;
CPC 4714
Ficus pleurocarpaQueensland,
Australia
C. Pearce and
B. Paulus
MT334965; MT335192; MT335432;
MT412496; MT412723; MT412946
[18,37,38]
B17Ca. brassicicolaCBS 112841TCMW 51206;
CPC 4552
Soil at Brassica sp.IndonesiaM.J. Wingfield N/A; KX784561; N/A;
N/A; KX784689; KX784619
[39]
B19Ca. bumicolaCMW 48257TCBS 143575Soil
(Eucalyptus plantation)
Aek Nauli,
North Sumatra,
Indonesia
M.J. Wingfield MT334975; MT335205; MT335445;
MT412509; MT412736; N/A
[16,18]
B20Ca. canadianaCMW 23673TCBS 110817;
STE-U 499
Picea sp.CanadaS. GreifenhagenMT334976; MT335206; MT335446;
MT412510; MT412737; MT412958
[17,18,40,41]
CERC 8952SoilHenan,
China
S.F. ChenMT335058; MT335290; MT335530;
MT412587; MT412821; MT413035
[18,25]
B23Ca. chinensisCMW 23674TCBS 114827;
CPC 4101
SoilHong Kong,
China
E.C.Y. LiewMT334990; MT335220; MT335460;
MT412524; MT412751; MT412972
[18,23,37]
CMW 30986CBS 112744;
CPC 4104
SoilHong Kong,
China
E.C.Y. LiewMT334991; MT335221; MT335461;
MT412525; MT412752; MT412973
[18,23,37]
B26Ca. cochinchinensisCMW 49915TCBS 143567Soil
(Hevea brasiliensis plantation)
Duong Minh Chau,
Tay Ninh,
Vietnam
N.Q. Pham,
Q.N. Dang and T.Q. Pham
MT334995; MT335225; MT335465;
MT412529; MT412756; MT412977
[16,18]
CMW 47186CBS 143568Soil (A. auriculiformis plantation)Song May, Dong Nai, VietnamN.Q. Pham and
T.Q. Pham
MT334996; MT335226; MT335466;
MT412530; MT412757; MT412978
[16,18]
B27Ca. colhouniiCBS 293.79TCMW 30999Camellia sinensisMauritiusA. PeerallyGQ280443; GQ267373; DQ190639;
KY653376; GQ267301; DQ190564
[17,37,38,42]
B29Ca. colombiensisCMW 23676TCBS 112220;
CPC 723
Soil
(E. grandis trees)
La Selva,
Colombia
M.J. WingfieldMT334998; MT335228; MT335468;
MT412532; MT412759; MT412980
[18,23]
CMW 30985CBS 112221;
CPC 724
Soil
(E. grandis trees)
La Selva,
Colombia
M.J. WingfieldMT334999; MT335229; MT335469;
MT412533; MT412760; MT412981
[18,23]
B30Ca. crousianaCMW 27249TCBS 127198E. grandisFujian,
China
M.J. Wingfield MT335000; MT335230; MT335470;
MT412534; MT412761; MT412982
[7,18]
CMW 27253CBS 127199E. grandisFujian,
China
M.J. Wingfield MT335001; MT335231; MT335471;
MT412535; MT412762; MT412983
[7,18]
B31Ca. curvisporaCMW 23693TCBS 116159;
CPC 765
SoilTamatave,
Madagascar
P.W. CrousMT335002; MT335232; MT335472;
MT412536; MT412763; N/A
[11,17,18,37,43]
CMW 48245CBS 143565Soil
(Eucalyptus plantation)
Aek Nauli,
North Sumatra,
Indonesia
M.J. Wingfield MT335003; MT335233; MT335473;
MT412537; MT412764; N/A
[16,18]
B36Ca. eucalyptiCMW 18444TCBS 125275E. grandisAek Nauli,
Sumatra Utara,
Indonesia
M.J. WingfieldMT335013; MT335243; MT335483;
MT412545; MT412774; MT412992
[18,37]
CMW 18445CBS 125276E. grandisAek Nauli,
Sumatra Utara,
Indonesia
M.J. WingfieldMT335014; MT335244; MT335484;
MT412546; MT412775; MT412993
[18,37]
B39Ca. fujianensisCMW 27257TCBS 127201E. grandisFujian,
China
M.J. Wingfield MT335019; MT335249; MT335489;
MT412551; MT412780; MT412998
[7,18]
CMW 27254CBS 127200E. grandisFujian,
China
M.J. Wingfield MT335020; MT335250; MT335490;
MT412552; MT412781; MT412999
[7,18]
B46Ca. heveicolaCMW 49913TCBS 143570Soil (H. brasiliensis plantation)Bau Bang,
Binh Duong,
Vietnam
N.Q. Pham,
Q.N. Dang and T.Q. Pham
MT335025; MT335255; MT335495;
N/A; MT412786; MT413004
[16,18]
CMW 49928CBS 143571SoilBu Gia Map National Park, Binh Phuoc,
Vietnam
N.Q. Pham,
Q.N. Dang and T.Q. Pham
MT335048; MT335280; MT335520;
MT412577; MT412811; MT413025
[16,18]
B47Ca. honghensisCERC 5572TCBS 142885;
CMW 47669
Soil
(Eucalyptus plantation)
Honghe,
Yunnan,
China
S.F. Chen and
J.Q. Li
MT335026; MT335256; MT335496;
MT412557; MT412787; MT413005
[4,18]
CERC 5571CBS 142884;
CMW 47668
Soil
(Eucalyptus plantation)
Honghe,
Yunnan,
China
S.F. Chen and
J.Q. Li
MT335027; MT335257; MT335497;
MT412558; MT412788; MT413006
[4,18]
B48Ca. hongkongensisCBS 114828TCMW 51217;
CPC 4670
SoilHong Kong,
China
M.J. WingfieldMT335028; MT335258; MT335498;
MT412559; MT412789; MT413007
[18,23]
CERC 3570CMW 47271Soil
(Eucalyptus plantation)
Beihai, Guangxi,
China
S.F. Chen,
J.Q. Li and
G.Q. Li
MT335030; MT335260; MT335500;
MT412561; MT412791; MT413009
[4,18]
B51Ca. ilicicolaCMW 30998TCBS 190.50;
IMI 299389;
STE-U 2482
Solanum tuberosumBogor,
Java,
Indonesia
K.B. Boedijn and
J. Reitsma
MT335036; MT335266; MT335506;
MT412564; MT412797; N/A
[17,18,37,44]
B52Ca. indonesiaeCMW 23683TCBS 112823;
CPC 4508
Syzygium
aromaticum
Warambunga,
Indonesia
M.J. WingfieldMT335037; MT335267; MT335507;
MT412565; MT412798; MT413015
[18,23]
CBS 112840CMW 51205;
CPC 4554
S. aromaticumWarambunga,
Indonesia
M.J. WingfieldMT335038; MT335268; MT335508;
MT412566; MT412799; MT413016
[18,23]
B53Ca. indusiataCBS 144.36TCMW 23699Camellia sinensisSri lankaN/AGQ280536; GQ267453; GQ267262;
KY653396; GQ267332; GQ267239
[17,37,39,45]
CBS 114684CMW 51213;
CPC 2446;
UFV16
Rhododendron sp.Florida, USAN.E. El-GhollGQ280537; GQ267454; DQ190653;
N/A; GQ267333; AF232862
[17,38,46]
B55Ca. kyotensisCBS 114525TATCC 18834;
CMW 51824;
CPC 2367
Robinia
pseudoacacia
JapanT. TerashitaMT335039; MT335271; MT335511;
MT412569; MT412802; MT413019
[17,18,39,47]
CBS 114550CMW 51825;
CPC 2351
SoilChinaM.J. WingfieldMT335016; MT335246; MT335486;
MT412548; MT412777; MT412995
[18,39]
B57Ca. lantauensisCERC 3302TCBS 142888;
CMW 47252
SoilLiDao, Hong Kong,
China
M.J. Wingfield
and S.F. Chen
MT335040; MT335272; MT335512;
MT412570; MT412803; N/A
[4,18]
CERC 3301CBS 142887;
CMW 47251
SoilLiDao, Hong Kong,
China
M.J. Wingfield
and S.F. Chen
MT335041; MT335273; MT335513;
N/A; MT412804; N/A
[4,18]
B58Ca. lateralisCMW 31412TCBS 136629Soil
(Eucalyptus plantation)
Guangxi,
China
X. Zhou, G. Zhao and F. HanMT335042; MT335274; MT335514;
MT412571; MT412805; MT413020
[11,18]
B62Ca. lichiCERC 8866TSoilHenan,
China
S.F. ChenMT335046; MT335278; MT335518;
MT412575; MT412809; MT413023
[18,25]
CERC 8850SoilHenan,
China
S.F. ChenMT335047; MT335279; MT335519;
MT412576; MT412810; MT413024
[18,25]
B63Ca. lombardianaCMW 30602TCBS 112634;
CPC 4233;
Lynfield 417
Xanthorrhoea australisVictoria,
Australia
T. BaigentMT335156; MT335395; MT335635;
MT412686; MT412926; MT413133
[17,18,24,38]
B64Ca. macroconidialisCBS 114880TCMW 51219;
CPC 307;
PPRI 4000
E. grandisSabie,
Mpumalanga,
South Africa
P.W. CrousMT335050; MT335282; MT335522;
MT412579; MT412813; MT413027
[17,18,37,48]
B65Ca. madagascariensisCMW 23686TCBS 114572;
CPC 2252
SoilRona,
Madagascar
J.E. TaylorMT335052; MT335284; MT335524;
MT412581; MT412815; MT413029
[17,18,37,38]
CMW 30993CBS 114571;
CPC 2253
SoilRona,
Madagascar
J.E. TaylorMT335053; MT335285; MT335525;
MT412582; MT412816; MT413030
[17,18,37,38]
B66Ca. malesianaCMW 23687TCBS 112752;
CPC 4223
SoilNorthern Sumatra,
Indonesia
M.J. WingfieldMT335054; MT335286; MT335526;
MT412583; MT412817; MT413031
[18,23]
CBS 112710CMW 51199;
CPC 3899
Leaf litterPrathet,
Thailand
N.L.
Hywel-Jones
MT335055; MT335287; MT335527;
MT412584; MT412818; MT413032
[18,23]
B70Ca. monticolaCBS 140645TCPC 28835SoilChiang Mai,
Thailand
P.W. CrousN/A; KT964771; N/A;
N/A; KT964773; KT964769
[49]
CPC 28836SoilChiang Mai,
Thailand
P.W. CrousN/A; KT964772; N/A;
N/A; KT964774; KT964770
[49]
B74Ca. multiseptataCMW 23692TCBS 112682;
CPC 1589
E. grandisNorth Sumatra,
Indonesia
M.J. WingfieldMT335067; MT335299; MT335539;
MT412596; MT412830; MT413044
[17,18,38,50]
B80Ca. pacificaCMW 16726TA1568;
CBS 109063;
IMI 354528;
STE-U 2534
Araucaria
heterophylla
Hawaii, USAM. AragakiMT335079; MT335311; MT335551;
MT412604; MT412842; N/A
[17,18,23,40]
CMW 30988CBS 114038Ipomoea aquaticaAuckland,
New Zealand
C.F. HillMT335080; MT335312; MT335552;
MT412605; MT412843; N/A
[17,18,23,37]
B81Ca. paracolhouniiCBS 114679TCMW 51212;
CPC 2445
N/AUSAA.Y. RossmanN/A; KX784582; N/A;
KY653423; KX784714; KX784644
[39,45]
CBS 114705CMW 51215;
CPC 2423
Fruit of
Annona reticulata
AustraliaD. HuttonN/A; N/A; N/A;
KY653424; KX784715; KX784645
[39,45]
B86Ca. penicilloidesCMW 23696TCBS 174.55;
STE-U 2388
Prunus sp.Hatizyo Island,
Japan
M. OokubuMT335106; MT335338; MT335578;
MT412631; MT412869; MT413081
[17,18,51]
B97Ca. pseudoreteaudiiCMW 25310TCBS 123694E. urophylla ×
E. grandis
Guangdong,
China
M.J. Wingfield
and X.D. Zhou
MT335119; MT335354; MT335594;
MT412647; MT412885; MT413096
[18,24]
CMW 25292CBS 123696E. urophylla ×
E. grandis
Guangdong,
China
M.J. Wingfield
and X.D. Zhou
MT335120; MT335355; MT335595;
MT412648; MT412886; MT413097
[18,24]
B104Ca. queenslandicaCMW 30604TCBS 112146;
CPC 3213
E. urophyllaLannercost,
Queensland,
Australia
B. BrownMT335132; MT335367; MT335607;
MT412660; MT412898; MT413108
[18,24]
CMW 30603CBS 112155;
CPC 3210
E. pellitaLannercost,
Queensland,
Australia
P.Q Thu and
K.M. Old
MT335133; MT335368; MT335608;
MT412661; MT412899; MT413109
[18,24]
B106Ca. reteaudiiCMW 30984TCBS 112144;
CPC 3201
E. camaldulensisChon Thanh,
Binh Phuoc,
Vietnam
M.J. Dudzinski and P.Q. ThuMT335135; MT335370; MT335610;
MT412663; MT412901; MT413111
[17,18,38,52]
CMW 16738CBS 112143;
CPC 3200
Eucalyptus leavesBinh Phuoc,
Vietnam
M.J. Dudzinski and P.Q. ThuMT335136; MT335371; MT335611;
MT412664; MT412902; MT413112
[17,18,38,52]
B112Ca. sumatrensisCMW 23698TCBS 112829;
CPC 4518
SoilNorthern Sumatra,
Indonesia
M.J. WingfieldMT335145; MT335382; MT335622;
MT412674; MT412913; N/A
[18,23]
CMW 30987CBS 112934;
CPC 4516
SoilNorthern Sumatra,
Indonesia
M.J. WingfieldMT335146; MT335383; MT335623;
MT412675; MT412914; N/A
[18,23]
B113Ca. syzygiicolaCBS 112831TCMW 51204;
CPC 4511
S. aromaticumSumatra,
Indonesia
M.J. WingfieldN/A; N/A; N/A;
N/A; KX784736; KX784663
[39]
B116Ca. uniseptataCBS 413.67TCMW 23678;
CPC 2391;
IMI 299577
Paphiopedilum callosumCelle, GermanyW. GerlachGQ280451; GQ267379; GQ267248;
N/A; GQ267307; GQ267208
[39]
B123Ca. xianrensisCSF12909TCGMCC3.19584Soil (near Eucalyptus plantation)Dacheng Town, Gaozhou County, Maoming Region, Guangdong, ChinaS.F. Chen, Q.C. Wang and W. WangN/A; MK962845; MK962857;
N/A; MK962869; MK962833
[21]
CSF12908CGMCC3.19518Soil (near Eucalyptus plantation)Dacheng Town, Gaozhou County, Maoming Region, Guangdong, ChinaS.F. Chen, Q.C. Wang and W. WangN/A; MK962844; MK962856;
N/A; MK962868; MK962832
[21]
B120Ca. yunnanensisCERC 5339TCBS 142897;
CMW 47644
Soil
(Eucalyptus plantation)
Yunnan,
China
S.F. Chen and
J.Q. Li
MT335157; MT335396; MT335636;
MT412687; MT412927; MT413134
[4,18]
CERC 5337CBS 142895;
CMW 47642
Soil
(Eucalyptus plantation)
Yunnan,
China
S.F. Chen and
J.Q. Li
MT335158; MT335397; MT335637;
MT412688; MT412928; MT413135
[4,18]
Curvicladiella cigneaCBS 109167TCPC 1595;
MUCL 40269
Decaying leafFrench GuianaC. DecockKM231122; KM231287; KM231461;
KM232311; KM231867; KM232002
[11,38,53]
CBS 109168CPC 1594;
MUCL 40268
Decaying seedFrench GuianaC. DecockKM231121; KM231286; KM231460;
KM232312; KM231868; KM232003
[11,38,53]
a Codes (B1 to B120) of the 120 accepted Calonectria species resulting from Liu and co-authors [18]. b ATCC = American Type Culture Collection, Virginia, USA; CBS = Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands; CERC = China Eucalypt Research Centre, ZhanJiang, Guangdong Province, China; CGMCC = China General Microbiological Culture Collection Center, Beijing, China; CMW = Culture collection of the Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, South Africa; CPC = Pedro Crous working collection housed at Westerdijk Fungal Biodiversity Institute; CSF = Culture Collection from Southern Forests (CSF), ZhanJiang, Guangdong Province, China; IMI = International Mycological Institute, CABI Bioscience, Egham, Bakeham Lane, UK; MUCL = Mycotheque, Laboratoire de Mycologie Systematique st Appliqee, I’Universite, Louvian-la-Neuve, Belgium; PPRI = Plant Protection Research Institute, Pretoria, South Africa; STE-U = Department of Plant Pathology, University of Stellenbosch, South Africa; ‘–’ represent no other collection number. c T = ex-type isolates of the species. d act = actin; cmdA = calmodulin; his3 = histone H3; rpb2 = the second largest subunit of RNA polymerase; tef1 = translation elongation factor 1-alpha; tub2 = β-tubulin. e N/A represents information not available.

2.4. Sexual Compatibility

The mating system as either homothallic or heterothallic was determined for the novel species identified in this study. Representative isolates of this species were crossed with each other in all possible combinations. These crosses were made on minimum salt agar (MSA) [54] with autoclaved toothpicks randomly placed on the agar surface. Petri dishes were then incubated at 25 °C for 2–8 wk, and they were observed regularly for the appearance of perithecia. When perithecia extruding ascospores emerged, germination tests were conducted to determine if the spores were viable. Production of viable ascospores was accepted as an indication of successful mating.

2.5. Morphology

Representative isolates of the novel species identified in this study were selected for morphological characterisation. Synthetic nutrient-poor agar (SNA) [55] was used to induce the asexual morphs. Agar plugs from axenic cultures were transferred to SNA and incubated at 25 °C for seven days. Fungal structures were lifted from the plates using a sterile needle and transferred to a drop of 85% lactic acid on microscope slides. Microscopic structures were examined under a Zeiss Axio Imager A1 microscope (Carl Zeiss Ltd., Jena, Germany).
In the case of sexual structures, the perithecia were transferred to Jung tissue freezing medium (Leica Biosystems, Wetzlar, Germany), which was frozen at −20 °C for ten minutes. Vertical sections (10 µm thick) were cut through the perithecia on a HM550 cryostat microtome (Microme International GmbH, Termo Fisher Scientifc, Walldorf, Germany) at −20 °C and examined under an Axio Imager A1 microscope.
For cultures selected as the ex-type isolates, 50 replicate measurements were made for each taxonomically characteristic structure. For other isolates, 30 replicate measurements were made. Minimum, maximum and average (mean) measurements were recorded as (minimum–) (average–standard deviation)–(average + standard deviation) (–maximum).
Optimal growth temperatures for the novel species were determined on MEA. Agar plugs were removed from the actively growing edges of 7-day-old cultures with a 5 mm diam. cork borer and transferred to the centres of 90 mm Petri dishes containing MEA. Cultures were grown at seven different temperatures ranging from 5 °C to 35 °C, at 5 °C intervals with five replicates per isolate. Colony diameters were measured after seven days. Colony colours were described using the colour charts of Rayner [56] using seven-day-old cultures on MEA incubated at 25 °C. All descriptions were deposited in MycoBank (www.mycobank.org, accessed on 3 October 2021).

3. Results

3.1. Sample Collection and Fungal Isolation

A total of 209 soil samples were collected and 353 isolates having a morphology typical of Calonectria were isolated from 79 of these samples (Table 1, Appendix A Table A1). Of these, 121 soil samples were from seven Eucalyptus plantations, of which 57 samples yielded 253 Calonectria isolates. Forty-three soil samples were collected from four natural forests, of which 14 samples yielded 61 Calonectria isolates; 21 soil samples were collected from two C. lanceolata plantations, two of which yielded nine Calonectria isolates; and 14 soil samples collected from a single P. heterocycle plantation, of which five samples yielded 25 Calonectria isolates. In addition, ten soil samples were collected from the Pi. massoniana plantation, only one of which yielded five Calonectria isolates (Table 1).

3.2. Phylogenetic Analyses

The tef1 fragment was amplified for all of the 353 isolates (Appendix A Table A1), and based on sequence differences for this region and the sampling sites, 144 isolates were selected to amplify the cmdA, his3 and tub2 gene regions. Subsequently, based on the 37 genotypes revealed by these four gene regions, 71 representative isolates were chosen to amplify the act and rpb2 gene regions (Appendix A Table A1). All of the 71 isolates, representing the 40 genotypes determined from the sequence data for the six gene regions, were used for phylogenetic inference (Table 2). Amplicons generated for the act, cmdA, his3, rpb2, tef1, and tub2 gene regions were approximately 300, 700, 500, 860, 550, and 600 bp, respectively.
Sequence data for 46 Calonectria species closely related to those collected in this study were downloaded from GenBank and a total of 78 sequences (for ex-type and other strains) from previous studies were included in the phylogenetic analyses (Table 3). Phylogenetic analyses based on the six individual gene regions and the concatenated dataset for those regions were conducted using both MP and ML methods. The results showed that the overall topologies generated from the MP analyses were essentially similar to those from the ML analyses, and consequently, only the ML trees are presented (Figure 3, Appendix B Figure A1, Figure A2, Figure A3, Figure A4, Figure A5 and Figure A6).
The partition homogeneity test carried out on the datasets, for the combined six gene regions, generated p values of 0.001. This showed that the accuracy of the combined data did not suffer relative to the individual partitions [57]. Sequence data for the six gene regions were thus combined for analyses. The sequence alignments based on the individual six gene regions and the combination of these were deposited in TreeBASE (No. S28845). Statistics and important parameters emerging from the phylogenetic analyses are presented in Table 4.
Based on the six-gene combined phylogenetic tree (Figure 3), for the 71 isolates used in the phylogenetic analyses, eight isolates resided in the Ca. colhounii species complex, two isolates in the Ca. reteaudii species complex and 61 isolates in the Ca. kyotensis species complex.

3.3. Species in the Calonectria colhounii Species Complex

Six isolates (CSF9941, CSF9974, CSF9975, CSF9976, CSF9977 and CSF9978), representing one genotype, formed a distinct lineage in the cmdA and tub2 analyses as well as in the six-gene combined phylogenetic tree (Figure 3, Appendix B Figure A2 and Figure A6). The total number of SNP differences between the six isolates and other phylogenetically closely related species [Ca. aciculata (ex-type isolate CERC 5342), Ca. colhounii (ex-type isolate CBS 293.79), Ca. eucalypti (ex-type isolate CMW 18444) and Ca. honghensis (ex-type isolate CERC 5572)] for six gene regions combined, varied between 13 and 31. Thus, this fungus can be regarded as a novel species. Two isolates (CSF9933 and CSF9934) formed an independent clade and were phylogenetically most closely related to the six isolates in the six-gene phylogenetic tree (Figure 3). These two isolates were consequently considered as the same species as the six isolates CSF9941, CSF9974, CSF9975, CSF9976, CSF9977 and CSF9978 and were identified as the novel species.

3.4. Species in the Calonectria reteaudii Species Complex

Two isolates (CSF10059 and CSF10060) were phylogenetically closely related to Ca. pseudoreteaudii and various other species based on act and cmdA trees (Appendix B Figure A1 and Figure A2), and clustered with Ca. pseudoreteaudii based on his3, rpb2, tef1, tub2 and the six-gene combined trees (Figure 3, Appendix B Figure A3, Figure A4, Figure A5 and Figure A6). In comparisons of DNA sequences for these six gene regions, all the sequences for the two isolates (CSF10059 and CSF10060) were 100% identical to the ex-type isolate (CMW 25310) of Ca. pseudoreteaudii. Consequently, they were identified as Ca. pseudoreteaudii (Figure 3).

3.5. Species in the Calonectria kyotensis Species Complex

Thirty-four isolates representing 20 genotypes were phylogenetically closest to Ca. kyotensis in each of the cmdA, his3, rpb2 (sequence data for the rpb2 were not available for isolate CSF9834), tef1, tub2 and the six-gene combined trees (Figure 3, Appendix B Figure A2, Figure A3, Figure A4, Figure A5 and Figure A6), and clustered with Ca. kyotensis based on the act tree (Appendix B Figure A1). Some isolates formed distinct clades based on the six-gene combined trees (Figure 3), while the total number of SNP differences between the 34 isolates and the ex-type isolate of Ca. kyotensis (CBS 114525) for six gene regions combined varied between 2 and 8. Based on the phylogenetic analyses, these 34 isolates were identified as Ca. kyotensis.
Four isolates (CSF7124, CSF9784, CSF9794 and CSF9799), representing two genotypes, were phylogenetically closest to Ca. hongkongensis in each of the cmdA, tub2 and six-gene combined tree (Figure 3, Appendix B Figure A2 and Figure A6), and clustered with Ca. hongkongensis based on act, his3, rpb2 and tef1 trees (Appendix B Figure A1, Figure A3, Figure A4 and Figure A5). There were only three or four SNP differences between these four isolates and the ex-type isolate of Ca. hongkongensis (CBS 114828) when sequences for six gene regions were combined. Thus, these four isolates were identified as Ca. hongkongensis.
Two isolates (CSF9862 and CSF9863), representing one genotype clustered with Ca. ilicicola in the his3 tree (Appendix B Figure A3), formed independent clades but closely related to Ca. ilicicola in the act, cmdA, rpb2, tef1 and six-gene combined trees (Figure 3, Appendix B Figure A1, Figure A2, Figure A4, Figure A5 and Figure A6). There were only six SNP differences between the two isolates and the ex-type isolate of Ca. ilicicola (CMW 30998) for five gene regions (tub2 sequence data were not available for Ca. ilicicola) combined. Consequently, these isolates were regarded as Ca. ilicicola.
Four isolates (CSF10024, CSF10070, CSF10077 and CSF10129), representing three genotypes, were phylogenetically related to Ca. pacifica and various other closely related species based on act and tef1 trees (Appendix B Figure A1 and Figure A5). They were, however, phylogenetically closest to Ca. pacifica based on his3 and six-gene combined trees (Appendix B Figure A3), and clustered with Ca. pacifica based on cmdA and rpb2 trees (Appendix B Figure A2 and Figure A4). There were only one or three SNP difference(s) between the four isolates and the ex-type isolate of Ca. pacifica (CMW 16726) for five gene regions (tub2 sequence data were not available for Ca. pacifica) combined. These four isolates were thus identified as Ca. pacifica.
Seventeen isolates representing 11 genotypes were phylogenetically closest to Ca. aconidialis based on cmdA, his3, tef1 and six-gene combined trees (Figure 3, Appendix B Figure A2, Figure A3 and Figure A5), and clustered with Ca. aconidialis based on act and rpb2 (rpb2 sequence data were not available for CSF9779 and CSF9875) trees (Appendix B Figure A1 and Figure A4). Some isolates formed distinct clades based on the six-gene combined trees (Figure 3), while the total number of SNP differences between the 17 isolates and the ex-type isolate of Ca. aconidialis (CMW 35174) for five gene regions (sequence data for the tub2 region were not available for Ca. aconidialis) combined varied between 0 and 4. Therefore, the 17 isolates were identified as Ca. aconidialis.
Seventy-one of the 353 isolates collected in this study were identified based on the DNA sequence of the six gene regions. According to the species identification results, we further identified the remaining 282 isolates based on the DNA sequences for two or four gene regions (Appendix A Table A1). Consequently, for the entire collection of 353 isolates, these were identified as Ca. aconidialis (178), Ca. kyotensis (103), Ca. hongkongensis (37), Ca. pacifica (17), Ca. ilicicola (five), Ca. pseudoreteaudii (five) and a novel species (eight), respectively.

3.6. Sexual Compatibility

Three isolates (CSF9933, CSF9941 and CSF9975) of the novel species were used in the mating tests (Table 2). All of these isolates formed protoperithecia readily within two weeks, and perithecia with viable ascospores were produced within four weeks. This was irrespective of whether they were crossed with each other or with themselves. The species was thus shown to be homothallic.

3.7. Morphology and Taxonomy

Based on multi-gene phylogenetic analyses (Figure 3, Appendix B Figure A1, Figure A2, Figure A3, Figure A4, Figure A5 and Figure A6) and morphological characteristics, seven Calonectria species were identified in this study, including six described species, i.e., Ca. aconidialis, Ca. kyotensis, Ca. hongkongensis, Ca. pacifica, Ca. ilicicola, Ca. pseudoreteaudii and one novel species. To facilitate future studies, complete morphological descriptions and illustrations have been made for the known species and these are presented in Appendix C (Figure A7, Figure A8, Figure A9, Figure A10, Figure A11 and Figure A12). The novel species can be distinguished from the phylogenetically most closely related species (Ca. aciculata, Ca. colhounii, Ca. eucalypti and Ca. honghensis) by the dimensions of its macroconidia and ascospores (Table 5). This species is described as follows:

Taxonomy

Calonectria minensis Q.L. Liu and S.F. Chen, sp. nov.
MycoBank MB841412. (Figure 4).
Etymology: Name refers to the short name of Fujian Province in Chinese “Min”, where this fungus was isolated.
Diagnosis: Calonectria minensis can be distinguished from the phylogenetically closely related species Ca. aciculata, Ca. colhounii, Ca. eucalypti and Ca. honghensis by its distinct ascospore and macroconidia dimensions.
Type: China: Fujian Province, Longyan Region, Xinluo District (25°07′08.597″ N, 116°44′42.257″ E), from soil collected in a Eucalyptus plantation, 6 November 2016, S.F. Chen, Q.L. Liu and F.F. Liu (HMAS249935–—holotype, CSF9941 = CGMCC3.18877—ex-type culture).
Description: Ascomata perithecial, solitary or in groups of four, bright yellow, becoming orange with age; in section, apex and body yellow, base red-brown, sub-globose to ovoid, 258–395 μm high, 227–330 μm diam, body turning dark yellow, and base dark red-brown in 3% KOH+; ascomatal wall rough, consisting of two thick-walled layers; outer layer of textura globulosa, 22–66 μm thick, cells becoming more compressed towards the inner layer of textura angularis, 9–21 μm thick, cells becoming thin-walled and hyaline towards the centre; outermost cells 16–31 × 8–16 μm, cells of inner layer 8–33 × 2–8 μm; ascomatal base up to 196 μm wide, consisting of dark red, angular cells, merging with an erumpent stroma; cells of the outer wall layer continuous with the pseudoparenchymatous cells of the erumpent stroma. Asci 4-spored, clavate, 80–163 × 11–27 μm, tapering into a long thin stalk. Ascospores aggregated in the upper third of the ascus, hyaline, guttulate, fusoid with rounded ends, straight to slightly curved, (1–)3-septate, constricted at the septum, (38.5–)46.5–64.5(–80.5) × (6–)6.5–8(–8.5) μm (av. = 55.5 × 7 μm). Macroconidiophores consisting of a stipe, a suite of penicillately arranged fertile branches, a stipe extension, and a terminal vesicle; stipe septate, hyaline, smooth, 33–144 × 4–9 μm, stipe extension septate, straight to flexuous 63–240 μm long, 2–3 μm wide at the apical septum, terminating in a clavate vesicle, 3–5 μm diam; lateral stipe extensions (90° to main axis) absent. Conidiogenous apparatus 28–97 μm wide, and 35–83 μm long; primary branches aseptate, 13–40 × 3–7 μm; secondary branches aseptate, 9–31 × 3–6 μm; tertiary branches aseptate, 8–14 × 3–5 μm, quaternary branches aseptate, 7−12 × 3–5 μm, each terminal branch producing 2–4 phialides; phialides allantoid to elongate doliiform to reniform, hyaline, aseptate, 4–14 × 2–7 μm, apex with minute periclinal thickening and inconspicuous collarette. Macroconidia cylindrical, rounded at both ends, straight, (51–)55–66(–79) × (4.5–)5–6(–7.5) μm (av. = 60.5 × 5.5 μm), (1–)3-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless slime. Mega- and microconidia not observed.
Culture characteristics: Colonies forming abundant woolly white to sienna (8) aerial mycelium at 25 °C on MEA, profuse sporulation; surface rust-coloured (39); reverse sienna (8) to rust-coloured (39) after 7 d. Chlamydospores extensive throughout the medium forming microsclerotia. Optimal growth temperature 25 °C, no growth at 5 °C and 35 °C, after 7 d, colonies at 10 °C, 15 °C, 20 °C, 25 °C and 30 °C reached 18.1 mm, 27.0 mm, 58.2 mm, 69.5 mm and 42.4 mm, respectively.
Additional specimens examined: China: Fujian Province, Longyan Region, Xinluo District (25°07′08.597″ N, 116°44′42.257″ E), from soil collected in a Eucalyptus plantation, 6 November 2016, S.F. Chen, Q.L. Liu and F.F. Liu (HMAS249936, culture CSF9933 = CGMCC3.18875); Fujian Province, Longyan Region, Liancheng County (25°26′14.348″ N, 116°38′42.400″ E), from soil under a natural forest, 6 November 2016, S.F. Chen, Q.L. Liu and F.F. Liu (HMAS249937, culture CSF9975 = CGMCC3.18881).
Notes: Calonectria minensis is a new species in the Ca. colhounii species complex. It is closely related to Ca. aciculata, Ca. colhounii, Ca. eucalypti, and Ca. honghensis, and can be distinguished from those species by the dimensions of its ascospores and macroconidia. The ascospores of Ca. minensis (av. = 55.5 × 7 µm) are larger than those of Ca. eucalypti (av. = 33 × 6 µm) [37] and Ca. honghensis (av. = 49 × 6 µm) [4]. The macroconidia of Ca. minensis (av. = 60.5 × 5.5 µm) are shorter than those of Ca. aciculata (av. = 69 × 5.5 µm) [4], Ca. colhounii (av. = 65 × 5 µm) [17] and Ca. eucalypti (av. = 72 × 6 µm) [37], but longer than those of Ca. honghensis (av. = 54 × 5.5 µm) [4]. The total number of SNP differences between the ex-type isolate of Ca. minensis (CSF9941), and the ex-type isolates of Ca. aciculata (CERC 5342), Ca. colhounii (CBS 293.79), Ca. eucalypti (CMW 18444) and Ca. honghensis (CERC 5572) for six gene regions combined, varied between 13 and 31.

3.8. Distribution of Calonectria Species in Fujian Province

Of the seven Calonectria species identified, Ca. aconidialis accounted for 50.4% of all the isolates. This was followed in order of occurrence by Ca. kyotensis (29.2%), Ca. hongkongensis (10.5%), Ca. pacifica (4.8%), Ca. minensis (2.3%), Ca. ilicicola (1.4%) and Ca. pseudoreteaudii (1.4%) (Figure 5). Calonectria aconidialis and Ca. kyotensis can be regarded as the most prevalent species (Figure 5).
Between two and four Calonectria species were isolated from soils sampled at each of the nine Counties or Districts (Figure 2). Calonectria aconidialis was found at all sites other than Cangshan District, Ca. kyotensis was found at all sites other than Yanping District and Zhangping County, and the remaining five species were found at between one and three sampling sites (Figure 2).
All seven species were isolated from soils collected in Eucalyptus plantations. Five of the species were isolated from soils in natural forests, the exception being Ca. ilicicola and Ca. pesudoreteaudii. Only Ca. aconidialis and Ca. kyotensis were isolated from soils in P. heterocycle and C. lanceolata plantations, and only Ca. kyotensis was collected from soils in the Pi. massoniana plantation (Figure 5). Based on the percentage of soil samples that obtained Calonectria from each of the five forest types, the results showed that Calonectria was widely distributed in Eucalyptus plantation soils (47.1%, 57 of 121 sampled soils), followed by P. heterocycle (35.7%, 5 of 14 sampled soils) and natural forests (32.6%, 14 of 43 sampled soils), only 10% of soil samples obtained Calonectria from C. lanceolata (2 of 21 sampled soils) or Pi. massoniana (1 of 10 sampled soils).
Calonectria kyotensis was detected in soils in all of the soil types sampled, while Ca. aconidialis was isolated from soils in all forest types other than Pi. massoniana. Calonectria hongkongensis, Ca. pacifica and Ca. minensis were found both in Eucalyptus plantations and natural forests and the remaining two species were found only in Eucalyptus plantations (Figure 5).

4. Discussion

A total of 353 Calonectria isolates were collected from soils in Eucalyptus plantations and adjacent plantations of other species or natural forests in Fujian Province. Multilocus phylogenetic inference and morphological characteristics revealed seven Calonectria species including Ca. aconidialis, Ca. hongkongensis, Ca. ilicicola, Ca. kyotensis, Ca. pacifica and Ca. pseudoreteaudii, and a novel species described here as Ca. minensis.
Results in this study showed that Ca. aconidialis and Ca. kyotensis were the most prevalent species in the soils sampled. Calonectria aconidialis accounted for 50.4% of all the isolates, which was found in eight of the nine sampled sites and soils of all forest types other than those of Pi. massoniana. The next most common species was Ca. kyotensis, accounting for 29.2% of the isolates, which was isolated from seven sites and soils of all five different forest types. The remaining five species were less common, and isolated only from one to three sites, either from Eucalyptus plantations or natural forests, or from both of these forest types.
Among the identified species, Ca. aconidialis is newly reported in Fujian Province and Ca. pacifica represents a first record for China. Eight Calonectria species were previously known in Fujian Province. These include Ca. crousiana, Ca. eucalypti, Ca. fujianensis, Ca. pauciramosa and Ca. pseudoreteaudii collected from diseased Eucalyptus leaves [7,8], Ca. hongkongensis and Ca. kyotensis isolated from soils in unknown forest types [4,18] and Ca. ilicicola collected from diseased peanuts (Arachis hypogaea) in Longyan Region [58].
The Calonectria species diversity in soils was clearly dependent on the forest types sampled. Of the seven species detected, all were obtained from Eucalyptus plantations, five were obtained from natural forests and only one or two species were from other forest types. While these observations are convincing in terms of broad patterns, they must be tempered by the fact that the greatest number of soil samples were from Eucalyptus plantations and natural forests, which could have influenced the results.
The newly described Ca. minensis isolated from soils both in Eucalyptus plantations and natural forest, adds a new species to the Ca. colhounii species complex. As a consequence, 13 species are now accommodated in this complex [4,7,17,18,21,25,37,39,46,49]. With the exception of Ca. macroconidialis [46], Ca. madagascariensis [17] and Ca. paracolhounii [39], all of the other 10 species have been recorded in southeastern Asia [4,7,17,21,25]. Species in this complex include some important causal agents of CLB on Eucalyptus spp. including Ca. aciculata, Ca. eucalypti and Ca. fujianensis, which have all been reported from diseased Eucalyptus trees in China plantations [4,7].
Five species residing in the Ca. kyotensis species complex were identified in the present study. Of these, Ca. aconidialis accounted for more than half of all the isolates collected, and has previously been shown to be widely distributed in soils of Eucalyptus plantation in many regions of southern China, including Guangdong [11,18], Guangxi [4,10,11] and Hainan Provinces [11]. In the present study, Ca. aconidialis was collected from soils of four types of forests and in eight of the nine sampling sites in Fujian Province (Figure 2), providing new geographic records for this pathogen in China. This species has previously been shown to infect inoculated Eucalyptus seedlings [10] and could pose a threat to Eucalyptus plantation forestry. Calonectria pacifica was isolated from soils both in the Eucalyptus plantations (Minhou and Yongan Counties) and natural forests (Yanping District) in this study. This species was originally described on Araucaria heterophylla from Hawaii, USA [40], and this is the first report of the fungus in China.
This study elucidated the diversity and distribution characteristics of Calonectria species in soils collected from plantations and natural forests in Fujian Province. Broad patterns of occurrence were clear with Eucalyptus soils yielding the largest number of species. The conifer forests had the lowest number of species, which is consistent with the fact that most Calonectria spp. are known from Angiosperm hosts or from soils associated with these plants. The results of the present study bring the number of Calonectria species recorded in Fujian to 11. Most of these species have also been shown to be pathogenic to Eucalyptus in previous studies [7,9,10]. The surprisingly high species diversity in this region suggests that Calonectria species will pose long-term challenges for the development of Eucalyptus forestry in southern China.

Author Contributions

Conceptualization, Q.L. and S.C.; methodology, Q.L. and S.C.; software, Q.L.; validation, Q.L., M.J.W., T.A.D., B.D.W. and S.C.; formal analysis, Q.L.; investigation, Q.L. and S.C.; resources, Q.L. and S.C.; data curation, Q.L. and S.C; writing—original draft preparation, Q.L.; writing—review and editing, Q.L., M.J.W., T.A.D., B.D.W. and S.C.; visualization, Q.L.; supervision, M.J.W., T.A.D., B.D.W. and S.C.; project administration, S.C.; funding acquisition, S.C. All authors have read and agreed to the published version of the manuscript.

Funding

This study was initiated through the bilateral agreement between the Governments of South Africa and China and supported by The National Key R&D Program of China (China-South Africa Forestry Joint Research Centre Project; project No. 2018YFE0120900), the special fund for basic scientific research of State Key Laboratory of Tree Genetics and Breeding (SKLTGB) of China (project No. TGB2017001), the National Ten-thousand Talents Program (Project No. W03070115) and the Guangdong Top Young Talents Program in China (Project No. 20171172).

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

The sequences from the current study were submitted to the NCBI database (https://www.ncbi.nlm.nih.gov/, accessed on 24 July 2022) and the accession numbers were listed in Table 2.

Acknowledgments

We thank FeiFei Liu for her assistance in collecting soil samples.

Conflicts of Interest

The authors declare no conflict of interest.

Appendix A. Species of Calonectria Collected in This Study

Table A1. Species of Calonectria collected in this study.
Table A1. Species of Calonectria collected in this study.
Species aIsolate No. bGenotype cSubstrateSampling SiteGPS CoordinateCollectorGenBank Accession No. d
actcmdAhis3rpb2tef1tub2
Calonectria
aconidialis
CSF9779 eAAA-AASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253064OK253135OK253279N/A fOK253491OK253844
CSF9857 eAAAAAASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253065OK253136OK253280OK253423OK253492OK253845
CSF9937 eAAAABASoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253066OK253137OK253281OK253424OK253493OK253846
CSF9938 eAAAABASoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253067OK253138OK253282OK253425OK253494OK253847
CSF9939 eAAAABASoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253068OK253139OK253283OK253426OK253495OK253848
CSF9809 eABAAAASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253069OK253140OK253284OK253427OK253496OK253849
CSF10105 eABAAAASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253070OK253141OK253285OK253428OK253497OK253850
CSF9789 eABAAABSoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253071OK253142OK253286OK253429OK253498OK253851
CSF9839 eABAAACSoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253072OK253143OK253287OK253430OK253499OK253852
CSF9844 eABAAACSoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253073OK253144OK253288OK253431OK253500OK253853
CSF9882 eABAAADSoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253074OK253145OK253289OK253432OK253501OK253854
CSF9987 eABAAADSoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253075OK253146OK253290OK253433OK253502OK253855
CSF9813 eABAACASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253076OK253147OK253291OK253434OK253503OK253856
CSF9841 eABAACASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253077OK253148OK253292OK253435OK253504OK253857
CSF9870 eABBAAASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253078OK253149OK253293OK253436OK253505OK253858
CSF9875 eABB-AASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253079OK253150OK253294N/AOK253506OK253859
CSF9957 eACBAAASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253080OK253151OK253295OK253437OK253507OK253860
CSF9851-AA-AASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiugOK253152OK253296OK253508OK253861
CSF9943-AA-AASoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253153OK253297OK253509OK253862
CSF9812-BA-AASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253154OK253298OK253510OK253863
CSF9831-BA-AASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°58′22.263″ N,
117°31′09.708″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253155OK253299OK253511OK253864
CSF9846-BA-AASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253156OK253300OK253512OK253865
CSF9880-BA-AASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253157OK253301OK253513OK253866
CSF9895-BA-AASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253158OK253302OK253514OK253867
CSF9905-BA-AASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253159OK253303OK253515OK253868
CSF9930-BA-AASoil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253160OK253304OK253516OK253869
CSF9964-BA-AASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253161OK253305OK253517OK253870
CSF9970-BA-AASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253162OK253306OK253518OK253871
CSF9982-BA-AASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253163OK253307OK253519OK253872
CSF9989-BA-AASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253164OK253308OK253520OK253873
CSF10032-BA-AASoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253165OK253309OK253521OK253874
CSF10034-BA-AASoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253166OK253310OK253522OK253875
CSF10041-BA-AASoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253167OK253311OK253523OK253876
CSF10050-BA-AASoil
(Cunninghamia lanceolata)
Qingliu, Sanming,
Fujian, China
26°07′23.497″ N,
116°53′00.762″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253168OK253312OK253524OK253877
CSF10064-BA-AASoil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253169OK253313OK253525OK253878
CSF10068-BA-AASoil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253170OK253314OK253526OK253879
CSF10073-BA-AASoil
(natural forest area)
Yanping, Nanping,
Fujian, China
26°42′26.672″ N,
118°07′58.317″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253171OK253315OK253527OK253880
CSF10075-BA-AASoil
(natural forest area)
Yanping, Nanping,
Fujian, China
26°42′26.672″ N,
118°07′58.317″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253172OK253316OK253528OK253881
CSF10081-BA-AASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253173OK253317OK253529OK253882
CSF10082-BA-AASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253174OK253318OK253530OK253883
CSF10097-BA-AASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253175OK253319OK253531OK253884
CSF10098-BA-AASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253176OK253320OK253532OK253885
CSF10110-BA-A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253177OK253321OK253533N/A
CSF10112-BA-AASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253178OK253322OK253534OK253886
CSF10119-BA-AASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253179OK253323OK253535OK253887
CSF10125-BA-AASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253180OK253324OK253536OK253888
CSF9856-BA-ACSoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253181OK253325OK253537OK253889
CSF9897-BA-ACSoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253182OK253326OK253538OK253890
CSF9814-BA-CASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253183OK253327OK253539OK253891
CSF9815-BA-CASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253184OK253328OK253540OK253892
CSF9842-BA-CASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253185OK253329OK253541OK253893
CSF9843-BA-CASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253186OK253330OK253542OK253894
CSF9887-BA-CASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253187OK253331OK253543OK253895
CSF9888-BA-CASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253188OK253332OK253544OK253896
CSF9889-BA-CASoil (Eucalyptus plantation)Zhangping, Longyan, Fujian, China25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253189OK253333OK253545OK253897
CSF9890-BA-CASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253190OK253334OK253546OK253898
CSF9891-BA-CASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253191OK253335OK253547OK253899
CSF9776----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253548
CSF9777----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253549
CSF9778----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253550
CSF9780----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253551
CSF9787----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253552
CSF9788----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253553
CSF9790----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253554
CSF9806----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253555
CSF9807----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253556
CSF9808----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253557
CSF9810----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253558
CSF9836----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253559
CSF9837----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253560
CSF9838----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253561
CSF9840----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253562
CSF9845----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253563
CSF9847----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253564
CSF9848----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253565
CSF9849----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253566
CSF9850----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253567
CSF9852----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253568
CSF9853----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253569
CSF9854----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253570
CSF9855----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253571
CSF9858----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253572
CSF9859----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253573
CSF9860----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253574
CSF9861----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253575
CSF9867----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253576
CSF9868----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253577
CSF9869----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253578
CSF9871----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253579
CSF9872----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253580
CSF9873----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253581
CSF9874----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253582
CSF9876----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253583
CSF9877----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253584
CSF9878----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253585
CSF9879----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253586
CSF9881----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253587
CSF9883----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253588
CSF9884----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253589
CSF9885----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253590
CSF9886----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253591
CSF9892----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253592
CSF9893----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253593
CSF9894----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253594
CSF9896----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253595
CSF9898----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253596
CSF9899----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253597
CSF9900----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253598
CSF9901----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253599
CSF9902----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253600
CSF9903----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253601
CSF9904----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253602
CSF9906----A-Soil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253603
CSF9927----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253604
CSF9928----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253605
CSF9929----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253606
CSF9931----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253607
CSF9940----A-Soil (Eucalyptus plantation)Xinluo, Longyan, Fujian, China25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253608
CSF9944----A-Soil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253609
CSF9954----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253610
CSF9955----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253611
CSF9956----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253612
CSF9958----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253613
CSF9965----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253614
CSF9966----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253615
CSF9967----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253616
CSF9968----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253617
CSF9971----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253618
CSF9979----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253619
CSF9980----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253620
CSF9981----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253621
CSF9983----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253622
CSF9984----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253623
CSF9985----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253624
CSF9986----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253625
CSF9988----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253626
CSF9990----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253627
CSF9991----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253628
CSF9992----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253629
CSF9993----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253630
CSF10029----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253631
CSF10030----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253632
CSF10031----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253633
CSF10033----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253634
CSF10035----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253635
CSF10036----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253636
CSF10037----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253637
CSF10042----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253638
CSF10043----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253639
CSF10048----A-Soil
(Cunninghamia lanceolata)
Qingliu, Sanming,
Fujian, China
26°07′23.497″ N,
116°53′00.762″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253640
CSF10049----A-Soil
(Cunninghamia lanceolata)
Qingliu, Sanming,
Fujian, China
26°07′23.497″ N,
116°53′00.762″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253641
CSF10051----A-Soil
(Cunninghamia lanceolata)
Qingliu, Sanming,
Fujian, China
26°07′23.497″ N,
116°53′00.762″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253642
CSF10052----A-Soil
(Cunninghamia lanceolata)
Qingliu, Sanming,
Fujian, China
26°07′23.497″ N,
116°53′00.762″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253643
CSF10063----A-Soil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253644
CSF10065----A-Soil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253645
CSF10066----A-Soil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253646
CSF10067----A-Soil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253647
CSF10069----A-Soil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253648
CSF10074----A-Soil
(natural forest area)
Yanping, Nanping,
Fujian, China
26°42′26.672″ N,
118°07′58.317″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253649
CSF10083----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253650
CSF10099----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253651
CSF10100----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253652
CSF10101----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253653
CSF10102----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253654
CSF10103----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253655
CSF10104----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253656
CSF10106----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253657
CSF10107----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253658
CSF10108----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253659
CSF10109----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253660
CSF10111----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253661
CSF10113----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253662
CSF10114----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253663
CSF10115----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253664
CSF10116----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253665
CSF10117----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253666
CSF10118----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253667
CSF10120----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253668
Ca. hongkongensisCSF7124 eAAAAAASoil
(natural forest area)
Cangshan, Fuzhou,
Fujian, China
26°5′16.2″ N,
119°14′19.8″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253081OK253192OK253336OK253438OK253669OK253900
CSF9784 eAAAAAASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253082OK253193OK253337OK253439OK253670OK253901
CSF9794 eABAAAASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253083OK253194OK253338OK253440OK253671OK253902
CSF9799 eABAAAASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253084OK253195OK253339OK253441OK253672OK253903
CSF7139-AA-AASoil
(natural forest area)
Cangshan, Fuzhou,
Fujian, China
26°5′16.2″ N,
119°14′19.8″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253196OK253340OK253673OK253904
CSF9804-AA-AASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253197OK253341OK253674OK253905
CSF9819-AA-AASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253198OK253342OK253675OK253906
CSF10093-AA-AASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253199OK253343OK253676OK253907
CSF10096-AA-AASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253200OK253344OK253677OK253908
CSF9829-BA-AASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°58′22.263″ N,
117°31′09.708″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253201OK253345OK253678OK253909
CSF7134----A-Soil
(natural forest area)
Cangshan, Fuzhou,
Fujian, China
26°5′16.2″ N,
119°14′19.8″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253679
CSF7135----A-Soil
(natural forest area)
Cangshan, Fuzhou,
Fujian, China
26°5′16.2″ N,
119°14′19.8″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253680
CSF7136----A-Soil
(natural forest area)
Cangshan, Fuzhou,
Fujian, China
26°5′16.2″ N,
119°14′19.8″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253681
CSF7138----A-Soil
(natural forest area)
Cangshan, Fuzhou,
Fujian, China
26°5′16.2″ N,
119°14′19.8″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253682
CSF9781----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253683
CSF9782----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253684
CSF9783----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253685
CSF9785----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253686
CSF9791----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253687
CSF9792----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253688
CSF9793----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253689
CSF9795----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253690
CSF9796----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253691
CSF9800----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253692
CSF9801----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253693
CSF9802----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253694
CSF9803----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253695
CSF9816----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253696
CSF9817----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253697
CSF9818----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253698
CSF9820----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253699
CSF9826----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°58′22.263″ N,
117°31′09.708″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253700
CSF9827----A-Soil (Eucalyptus plantation)Hua’an, Zhangzhou, Fujian, China24°58′22.263″ N,
117°31′09.708″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253701
CSF9828----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°58′22.263″ N,
117°31′09.708″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253702
CSF9830----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°58′22.263″ N,
117°31′09.708″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253703
CSF10094----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253704
CSF10095----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253705
Ca. ilicicolaCSF9862 eAAAAAASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253085OK253202OK253346OK253442OK253706OK253910
CSF9863 eAAAAAASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253086OK253203OK253347OK253443OK253707OK253911
CSF9864-AA-AASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253204OK253348OK253708OK253912
CSF9865-AA-AASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253205OK253349OK253709OK253913
CSF9866-AA-AASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253206OK253350OK253710OK253914
Ca. kyotensisCSF7130 eAAAAAASoil
(natural forest area)
Cangshan, Fuzhou,
Fujian, China
26°5′16.2″ N,
119°14′19.8″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253087OK253207OK253351OK253444OK253711OK253915
CSF10088 eAAAAAASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253088OK253208OK253352OK253445OK253712OK253916
CSF9834 eAAA-ABSoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°58′22.263″ N,
117°31′09.708″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253089OK253209OK253353N/AOK253713OK253917
CSF9910 eAAAAABSoil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253090OK253210OK253354OK253446OK253714OK253918
CSF10014 eAAAAACSoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253091OK253211OK253355OK253447OK253715OK253919
CSF10080 eAAAAADSoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253092OK253212OK253356OK253448OK253716OK253920
CSF10086 eAAAAAESoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253093OK253213OK253357OK253449OK253717OK253921
CSF10053 eAAAABBSoil
(Pinus massoniana)
Qingliu, Sanming,
Fujian, China
26°10′54.311″ N,
116°52′50.901″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253094OK253214OK253358OK253450OK253718OK253922
CSF10054 eAAAABBSoil
(Pinus massoniana)
Qingliu, Sanming,
Fujian, China
26°10′54.311″ N,
116°52′50.901″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253095OK253215OK253359OK253451OK253719OK253923
CSF9922 eAAAABFSoil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253096OK253216OK253360OK253452OK253720OK253924
CSF9923 eAAAABFSoil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253097OK253217OK253361OK253453OK253721OK253925
CSF9949 eAAAADBSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253098OK253218OK253362OK253454OK253722OK253926
CSF9951 eAAAADBSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253099OK253219OK253363OK253455OK253723OK253927
CSF9932 eAAAADGSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253100OK253220OK253364OK253456OK253724OK253928
CSF9935 eAAAADGSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253101OK253221OK253365OK253457OK253725OK253929
CSF9936 eAAAADGSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253102OK253222OK253366OK253458OK253726OK253930
CSF10020 eAAAAEASoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253103OK253223OK253367OK253459OK253727OK253931
CSF10021 eAAAAEASoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253104OK253224OK253368OK253460OK253728OK253932
CSF10009 eAAABBHSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253105OK253225OK253369OK253461OK253729OK253933
CSF10010 eAAABBHSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253106OK253226OK253370OK253462OK253730OK253934
CSF9997 eAABAABSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253107OK253227OK253371OK253463OK253731OK253935
CSF9969 eAABACBSoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253108OK253228OK253372OK253464OK253732OK253936
CSF9972 eAABACBSoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253109OK253229OK253373OK253465OK253733OK253937
CSF9973 eAABACBSoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253110OK253230OK253374OK253466OK253734OK253938
CSF10126 eAACAAASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253111OK253231OK253375OK253467OK253735OK253939
CSF9962 eAACAADSoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253112OK253232OK253376OK253468OK253736OK253940
CSF10019 eAADABBSoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253113OK253233OK253377OK253469OK253737OK253941
CSF10022 eAADABBSoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253114OK253234OK253378OK253470OK253738OK253942
CSF10023 eAADABBSoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253115OK253235OK253379OK253471OK253739OK253943
CSF10045 eABAAABSoil
(Cunninghamia lanceolata)
Qingliu, Sanming,
Fujian, China
26°07′23.497″ N,
116°53′00.762″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253116OK253236OK253380OK253472OK253740OK253944
CSF10047 eABAAABSoil
(Cunninghamia lanceolata)
Qingliu, Sanming,
Fujian, China
26°07′23.497″ N,
116°53′00.762″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253117OK253237OK253381OK253473OK253741OK253945
CSF9824 eACBAACSoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253118OK253238OK253382OK253474OK253742OK253946
CSF10004 eADAACBSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253119OK253239OK253383OK253475OK253743OK253947
CSF10005 eADAACBSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253120OK253240OK253384OK253476OK253744OK253948
CSF7123-AA-ABSoil
(natural forest area)
Cangshan, Fuzhou,
Fujian, China
26°5′16.2″ N,
119°14′19.8″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253241OK253385OK253745OK253949
CSF9915-AA-ABSoil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253242OK253386OK253746OK253950
CSF9999-AA-ABSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253243OK253387OK253747OK253951
CSF10124-AA-ABSoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253244OK253388OK253748OK253952
CSF10055-AA-BBSoil
(Pinus massoniana)
Qingliu, Sanming,
Fujian, China
26°10′54.311″ N,
116°52′50.901″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253245OK253389OK253749OK253953
CSF10056-AA-BBSoil
(Pinus massoniana)
Qingliu, Sanming,
Fujian, China
26°10′54.311″ N,
116°52′50.901″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253246OK253390OK253750OK253954
CSF10057-AA-BBSoil
(Pinus massoniana)
Qingliu, Sanming,
Fujian, China
26°10′54.311″ N,
116°52′50.901″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253247OK253391OK253751OK253955
CSF9952-AA-DBSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253248OK253392OK253752OK253956
CSF9953-AA-DBSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253249OK253393OK253753OK253957
CSF9924-AA-BFSoil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253250OK253394OK253754OK253958
CSF9925-AA-BFSoil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253251OK253395OK253755OK253959
CSF9926-AA-BFSoil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253252OK253396OK253756OK253960
CSF10011-AA-BHSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253253OK253397OK253757OK253961
CSF10012-AA-BHSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253254OK253398OK253758OK253962
CSF10013-AA-BHSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253255OK253399OK253759OK253963
CSF10006-DA-CBSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253256OK253400OK253760OK253964
CSF10007-DA-CBSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253257OK253401OK253761OK253965
CSF10008-DA-CBSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253258OK253402OK253762OK253966
CSF9821----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253763
CSF9822----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253764
CSF9823----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253765
CSF9825----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253766
CSF9832----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°58′22.263″ N,
117°31′09.708″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253767
CSF9833----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°58′22.263″ N,
117°31′09.708″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253768
CSF9835----A-Soil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°58′22.263″ N,
117°31′09.708″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253769
CSF9907----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253770
CSF9908----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253771
CSF9909----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253772
CSF9911----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253773
CSF9912----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253774
CSF9913----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253775
CSF9914----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253776
CSF9916----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253777
CSF9917----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253778
CSF9918----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253779
CSF9919----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253780
CSF9920----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253781
CSF9921----A-Soil
(Phyllostachys heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253782
CSF9959----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253783
CSF9960----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253784
CSF9961----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253785
CSF9963----A-Soil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253786
CSF9994----A-Soil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253787
CSF9995----A-Soil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253788
CSF9996----A-Soil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253789
CSF9998----A-Soil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253790
CSF10000----A-Soil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253791
CSF10001----A-Soil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253792
CSF10002----A-Soil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253793
CSF10003----A-Soil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253794
CSF10015----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253795
CSF10016----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253796
CSF10044----A-Soil
(Cunninghamia lanceolata)
Qingliu, Sanming,
Fujian, China
26°07′23.497″ N,
116°53′00.762″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253797
CSF10046----A-Soil
(Cunninghamia lanceolata)
Qingliu, Sanming,
Fujian, China
26°07′23.497″ N,
116°53′00.762″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253798
CSF10084----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253799
CSF10085----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253800
CSF10087----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253801
CSF10089----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253802
CSF10090----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253803
CSF10091----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253804
CSF10092----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253805
CSF10121----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253806
CSF10122----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253807
CSF10123----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253808
CSF10127----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253809
CSF10128----A-Soil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253810
CSF7122----A-Soil
(natural forest area)
Cangshan, Fuzhou,
Fujian, China
26°5′16.2″ N,
119°14′19.8″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253811
CSF7128----A-Soil
(natural forest area)
Cangshan, Fuzhou,
Fujian, China
26°5′16.2″ N,
119°14′19.8″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253812
CSF7129----A-Soil
(natural forest area)
Cangshan, Fuzhou,
Fujian, China
26°5′16.2″ N,
119°14′19.8″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253813
Ca. minensis
sp. nov.
CSF9941 e,h–j;
CGMCC3.18877
AAAAAASoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253121OK253259OK253403OK253477OK253814OK253967
CSF9974 eAAAAAASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253122OK253260OK253404OK253478OK253815OK253968
CSF9975 e,h,i;
CGMCC3.18881
AAAAAASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253123OK253261OK253405OK253479OK253816OK253969
CSF9976 eAAAAAASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253124OK253262OK253406OK253480OK253817OK253970
CSF9977 eAAAAAASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253125OK253263OK253407OK253481OK253818OK253971
CSF9978 eAAAAAASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253126OK253264OK253408OK253482OK253819OK253972
CSF9933 e,h,i;
CGMCC3.18875
ABBABBSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253127OK253265OK253409OK253483OK253820OK253973
CSF9934 eABBABBSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253128OK253266OK253410OK253484OK253821OK253974
Ca. pacificaCSF10024 eAAAAAASoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253129OK253267OK253411OK253485OK253822OK253975
CSF10129 eBAAAAASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253130OK253268OK253412OK253486OK253823OK253976
CSF10070 eCABAAASoil
(natural forest area)
Yanping, Nanping,
Fujian, China
26°42′26.672″ N,
118°07′58.317″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253131OK253269OK253413OK253487OK253824OK253977
CSF10077 eCABAAASoil
(natural forest area)
Yanping, Nanping,
Fujian, China
26°42′26.672″ N,
118°07′58.317″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253132OK253270OK253414OK253488OK253825OK253978
CSF10027-AA-AASoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253271OK253415OK253826OK253979
CSF10039-AA-AASoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253272OK253416OK253827OK253980
CSF10130-AA-AASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253273OK253417OK253828OK253981
CSF10025----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253829
CSF10026----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253830
CSF10028----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253831
CSF10038----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253832
CSF10040----A-Soil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253833
CSF10071----A-Soil
(natural forest area)
Yanping, Nanping,
Fujian, China
26°42′26.672″ N,
118°07′58.317″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253834
CSF10072----A-Soil
(natural forest area)
Yanping, Nanping,
Fujian, China
26°42′26.672″ N,
118°07′58.317″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253835
CSF10076----A-Soil
(natural forest area)
Yanping, Nanping,
Fujian, China
26°42′26.672″ N,
118°07′58.317″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253836
CSF10078----A-Soil
(natural forest area)
Yanping, Nanping,
Fujian, China
26°42′26.672″ N,
118°07′58.317″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253837
CSF10079----A-Soil
(natural forest area)
Yanping, Nanping,
Fujian, China
26°42′26.672″ N,
118°07′58.317″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253838
Ca. pseudoreteaudiiCSF10059 eAAAAAASoil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253133OK253274OK253418OK253489OK253839OK253982
CSF10060 eAAAAAASoil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253134OK253275OK253419OK253490OK253840OK253983
CSF10058-AA-AASoil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253276OK253420OK253841OK253984
CSF10061-AA-AASoil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253277OK253421OK253842OK253985
CSF10062-AA-AASoil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253278OK253422OK253843OK253986
a New species described in this study are indicated in bold. b CSF = Culture Collection at the Research Institute of Fast-growing Trees (RIFT)/China Eucalypt Research Centre (CERC), Chinese Academy of Forestry (CAF), ZhanJiang, Guangdong Province, China; CGMCC = China General Microbiological Culture Collection Center, Beijing, China. c Genotype within each identified species, determined by sequences of act, cmdA, his3, rpb2, tef1 and tub2 regions; ‘-’ means not available. d act = actin; cmdA = calmodulin; his3 = histone H3; rpb2 = the second largest subunit of RNA polymerase; tef1 = translation elongation factor 1-alpha; tub2 = β-tubulin. e Isolates used in phylogenetic analyses. f N/A represents the relative locus was not successfully amplified in the current study. g ‘–’ represents the relative locus was not amplified in the current study. h Isolates used in morphological and culture growth studies. i Isolates used for mating studies. j Isolates that represent ex-type cultures are indicated in bold.

Appendix B. Phylogenetic Tree of Calonectria Species Based on Maximum Likelihood (ML) Analyses of act, cmdA, his3, rpb2, tef1 and tub2 Gene Sequences

Figure A1. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of act gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented at the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Figure A1. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of act gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented at the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Jof 08 00811 g0a1
Figure A2. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of cmdA gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented at the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Figure A2. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of cmdA gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented at the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Jof 08 00811 g0a2
Figure A3. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of his3 gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented at the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Figure A3. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of his3 gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented at the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Jof 08 00811 g0a3
Figure A4. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of rpb2 gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented at the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Figure A4. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of rpb2 gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented at the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Jof 08 00811 g0a4
Figure A5. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of tef1 gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented at the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Figure A5. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of tef1 gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented at the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Jof 08 00811 g0a5
Figure A6. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of tub2 gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented at the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Figure A6. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of tub2 gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented at the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Jof 08 00811 g0a6

Appendix C. Morphology of Six Previously Described Calonectria Species Collected in This Study

Calonectria aconidialis
Figure A7. Calonectria aconidialis. (a). Perithecium; (b). vertical section through a perithecium; (c). cells around ostiolar region of perithecium; (d). section through lateral perithecial wall; (e,f). asci; (g). ascospores; (hj). macroconidiophore; (km). obpyriform to sphaeropedunculate vesicles; (n,o). conidiogenous apparatus with conidiophore branches and elongate doliiform to reniform phialides; (p,q). macroconidia.—Scale bars: a = 200 μm; b = 100 μm; c, d, f and h–j = 20 μm; e = 50 μm; g and n–q = 10 μm; k–m = 5 μm.
Figure A7. Calonectria aconidialis. (a). Perithecium; (b). vertical section through a perithecium; (c). cells around ostiolar region of perithecium; (d). section through lateral perithecial wall; (e,f). asci; (g). ascospores; (hj). macroconidiophore; (km). obpyriform to sphaeropedunculate vesicles; (n,o). conidiogenous apparatus with conidiophore branches and elongate doliiform to reniform phialides; (p,q). macroconidia.—Scale bars: a = 200 μm; b = 100 μm; c, d, f and h–j = 20 μm; e = 50 μm; g and n–q = 10 μm; k–m = 5 μm.
Jof 08 00811 g0a7
  • Description: Ascomata perithecial, solitary or in groups of two, orange, becoming orange-brown with age; in section, apex and body orange, base red-brown, subglobose to ovoid, 368–491 μm high, 335–455 μm diam, body turning dark orange to red, and base dark red-brown in 3% KOH+; ascomatal wall rough, consisting of two thick-walled layers; outer layer of textura globulosa, 23–82 μm thick, cells becoming more compressed towards the inner layer of textura angularis, 8–21 μm thick, cells becoming thin-walled and hyaline towards the centre; outermost cells 21–35 × 7–21 μm, cells of inner layer 9–34 × 2–9 μm; ascomatal base up to 201 μm wide, consisting of dark red, angular cells, merging with an erumpent stroma; cells of the outer wall layer continuous with the pseudoparenchymatous cells of the erumpent stroma. Asci 8-spored, clavate, 68–143 × 10–22 μm, tapering into a long thin stalk. Ascospores aggregated in the upper third of the ascus, hyaline, guttulate, fusoid with rounded ends, straight to slightly curved, 1-septate, constricted at the septum, (24.5–)30.5–37.5(–42.5) × (4–)4.5–5.5(–7) μm (av. = 34 × 5 μm). Macroconidiophores consisting of a stipe, a suite of penicillate arranged fertile branches, a stipe extension, and a terminal vesicle; stipe septate, hyaline, smooth, 27–134 × 4–6 μm, stipe extension septate, straight to flexuous 64–129 μm long, 2–4 μm wide at the apical septum, terminating in a obpyriform to sphaeropedunculate vesicle, 3–7 μm diam; lateral stipe extensions (90° to main axis) moderate, 31–88 μm long, 1.5–3 μm wide at the apical septum, terminating in obpyriform vesicles, 2−5 μm. Conidiogenous apparatus 37–134 μm wide, and 41–128 μm long; primary branches aseptate, 15–27 × 3–5 μm; secondary branches aseptate, 12–20 × 3–4.5 μm; tertiary branches aseptate, 11–15 × 3–4 μm; quaternary branches aseptate, 8−16 × 3–5 μm, each terminal branch producing 2–6 phialides; phialides elongate doliiform to reniform, hyaline, aseptate, 9–18 × 2–5 μm, apex with minute periclinal thickening and inconspicuous collarette. Macroconidia cylindrical, rounded at both ends, straight, (40–)46–54.5(–63.5) × (3.5–)4.5–5(–6) μm (av. = 50 × 5 μm), 1-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless slime. Mega- and microconidia not observed.
  • Culture characteristics: Colonies producing abundant white to cinnamon (62) aerial mycelium at 25 °C on MEA, moderate sporulation on the medium surface; reverse sienna (8) to umber (9) after 7 d; chlamydospores extensive throughout the medium forming microsclerotia. Optimal growth temperature 25 °C, no growth at 5 °C and 35 °C, after 7 d, colonies at 10 °C, 15 °C, 20 °C, 25 °C and 30 °C reached 21.5 mm, 31.2 mm, 57.1 mm, 81.3 mm and 55.2 mm, respectively.
  • Specimens examined: China: Fujian Province, Longyan Region, Xinluo District (25°07′08.597″ N, 116°44′42.257″ E), from soil collected in a Eucalyptus plantation, 6 November 2016, S.F. Chen, Q.L. Liu and F.F. Liu (HMAS249929, culture CSF9937); Fujian Province, Longyan Region, Liancheng County (25°26′14.348″ N, 116°38′42.400″ E), from soil under a natural forest, 6 November 2016, S.F. Chen, Q.L. Liu and F.F. Liu (HMAS249930, culture CSF9957).
  • Notes: Isolates CSF9937, CSF9938 and CSF9957 were crossed with each other in all possible combinations on MSA to which autoclaved toothpicks had been placed, randomly distributed on the agar surface. Isolates CSF9937 and CSF9938 readily formed protoperithecia within two weeks, and perithecia with viable ascospores were produced within four weeks, when they crossed with themselves. After eight weeks of incubation, isolate CSF9957 failed to form sexual structures in any combination. Calonectria aconidialis is a species in the Ca. kyotensis species complex. The ascospores of Ca. aconidialis obtained in this study (av. = 34 × 5 μm) were smaller than those of the originally described Ca. aconidialis (av. = 36 × 6 μm) [11].
Calonectria hongkongensis
Figure A8. Calonectria hongkongensis. (a). Perithecium; (b). vertical section through a perithecium; (c). cells around ostiolar region of perithecium; (d). section through lateral perithecial wall; (e,f). asci; (g,h). ascospores; (i,j). macroconidiophore; (km). sphaeropedunculate vesicles; (n,o). conidiogenous apparatus with conidiophore branches and elongate doliiform to reniform phialides; (p,q). macroconidia.—Scale bars: a = 200 μm; b = 100 μm; c–f and i,j = 20 μm; g,h and n–q = 10 μm; k–m = 5 μm.
Figure A8. Calonectria hongkongensis. (a). Perithecium; (b). vertical section through a perithecium; (c). cells around ostiolar region of perithecium; (d). section through lateral perithecial wall; (e,f). asci; (g,h). ascospores; (i,j). macroconidiophore; (km). sphaeropedunculate vesicles; (n,o). conidiogenous apparatus with conidiophore branches and elongate doliiform to reniform phialides; (p,q). macroconidia.—Scale bars: a = 200 μm; b = 100 μm; c–f and i,j = 20 μm; g,h and n–q = 10 μm; k–m = 5 μm.
Jof 08 00811 g0a8
  • Description: Ascomata perithecial, solitary or in groups of up to three, orange, becoming red-brown with age; in section, apex and body orange, base dark red-brown, subglobose to ovoid, 243–376 μm high, 219–355 μm diam, body turning red, and base dark red-brown in 3% KOH+; ascomatal wall rough, consisting of two thick-walled layers; outer layer of textura globulosa, 31–54 μm thick, cells becoming more compressed towards the inner layer of textura angularis, 10–28 μm thick, cells becoming thin-walled and hyaline towards the centre; outermost cells 10–25 × 9–23 μm, cells of inner layer 6–24 × 2–6 μm; ascomatal base up to 168 μm wide, consisting of dark red, angular cells, merging with an erumpent stroma; cells of the outer wall layer continuous with the pseudoparenchymatous cells of the erumpent stroma. Asci 8-spored, clavate, 82–148 × 12–32 μm, tapering into a long thin stalk. Ascospores aggregated in the upper third of the ascus, hyaline, guttulate, fusoid with rounded ends, straight to slightly curved, 1-septate, constricted at the septum, (23–)25–30(–34) × (4–)5–7(–8) μm (av. = 28 × 6 μm). Macroconidiophores consisting of a stipe, a suite of penicillate arranged fertile branches, a stipe extension, and a terminal vesicle; stipe septate, hyaline, smooth, 47–117 × 4–8 μm, stipe extension septate, straight to flexuous 68–198 μm long, 1–4 μm wide at the apical septum, terminating in a sphaeropedunculate vesicle, 4–10 μm diam; lateral stipe extensions (90° to main axis) abundant, 42–111 μm long, 1–3 μm wide at the apical septum, terminating in obpyriform vesicles, 2−6 μm. Conidiogenous apparatus 37–146 μm wide, and 41–111 μm long; primary branches aseptate, 12–28 × 3–5.5 μm; secondary branches aseptate, 9.5–19 × 3–6 μm; tertiary branches aseptate, 9–13 × 3–5 μm, additional branches –5, aseptate, 8–15 × 2–4.5 μm, each terminal branch producing 2–4 phialides; phialides elongate doliiform to reniform, hyaline, aseptate, 8–14 × 2–5 μm, apex with minute periclinal thickening and inconspicuous collarette. Macroconidia cylindrical, rounded at both ends, straight, (34–)37–41(–44) × (3–)3.5–4(–5) μm (av. = 39 × 4 μm), 1-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless slime. Mega- and microconidia not observed.
  • Culture characteristics: Colonies forming abundant white to sienna (8) aerial mycelium at 25 °C on MEA, with irregular margins, abundant sporulation; surface rust-coloured (39); reverse sienna (8) to umber (9) after 7 d. Chlamydospores extensive throughout the medium forming microsclerotia. Optimal growth temperature 25 °C, no growth at 5 °C and 35 °C, after 7 d, colonies at 10 °C, 15 °C, 20 °C, 25 °C and 30 °C reached 21.2 mm, 26.1 mm, 46.3 mm, 69.1 mm and 64.1 mm, respectively.
  • Specimens examined: China: Fujian Province, Zhangzhou Region, Hua’an county (24°53′49.369″ N, 117°32′45.070″ E), from soil collected in a Eucalyptus plantation, 5 November 2016, S.F. Chen, Q.L. Liu and F.F. Liu (HMAS249931, culture CSF9784).
  • Notes: Isolates CSF7124, CSF9784 and CSF9794 were crossed with each other in all possible combinations on MSA. Isolates CSF7124 and CSF9784 readily formed protoperithecia within two weeks, and perithecia with viable ascospores were produced within four weeks, when they crossed with themselves. After eight weeks of incubation, isolate CSF9794 failed to form sexual structures in any combination. Calonectria hongkongensis is a species in the Ca. kyotensis species complex. The ascospores and macroconidia of Ca. hongkongensis obtained in this study (ascospores: av. = 28 × 6 μm; macroconidia: av. = 39 × 4 μm) were shorter than those of the originally described Ca. hongkongensis (ascospores: av. = 31 × 6 μm; macroconidia: av. = 46.5 × 4 μm) [23]. The vesicle of Ca. hongkongensis obtained in this study (4–10 μm) was narrower than those of the originally described Ca. hongkongensis (8–14 μm) [23].
Calonectria ilicicola
Figure A9. Calonectria ilicicola. (a). Perithecium; (b). vertical section through a perithecium; (c). cells around ostiolar region of perithecium; (d). section through lateral perithecial wall; (e,f). asci; (g). ascospores; (h,i). macroconidiophore; (j,k). ovoid to sphaeropedunculate vesicles; (l,m). conidiogenous apparatus with conidiophore branches and elongate doliiform to reniform phialides; (n,o). macroconidia.—Scale bars: a = 200 μm; b = 100 μm; c, d, f and i = 20 μm; e and h = 50 μm; g and l–o = 10 μm; j, k = 5 μm.
Figure A9. Calonectria ilicicola. (a). Perithecium; (b). vertical section through a perithecium; (c). cells around ostiolar region of perithecium; (d). section through lateral perithecial wall; (e,f). asci; (g). ascospores; (h,i). macroconidiophore; (j,k). ovoid to sphaeropedunculate vesicles; (l,m). conidiogenous apparatus with conidiophore branches and elongate doliiform to reniform phialides; (n,o). macroconidia.—Scale bars: a = 200 μm; b = 100 μm; c, d, f and i = 20 μm; e and h = 50 μm; g and l–o = 10 μm; j, k = 5 μm.
Jof 08 00811 g0a9
  • Description: Ascomata perithecial, solitary or in groups of two, orange to red, becoming red-brown with age; in section, apex and body red-brown, base dark red-brown, subglobose to ovoid, 375–509 μm high, 363–474 μm diam, body turning dark red, and base dark red-brown in 3% KOH+; ascomatal wall rough, consisting of two thick-walled layers; outer layer of textura globulosa, 47–75 μm thick, cells becoming more compressed towards the inner layer of textura angularis, 14–30 μm thick, cells becoming thin-walled and hyaline towards the centre; outermost cells 9–40 × 8–36 μm, cells of inner layer 10–23 × 2–7 μm; ascomatal base up to 208 μm wide, consisting of dark red, angular cells, merging with an erumpent stroma; cells of the outer wall layer continuous with the pseudoparenchymatous cells of the erumpent stroma. Asci 8-spored, clavate, 70–137 × 12–34 μm, tapering into a long thin stalk. Ascospores aggregated in the upper third of the ascus, hyaline, guttulate, fusoid with rounded ends, straight to slightly curved, 1-septate, not or slightly constricted at the septum, (30–)37–46.5(–58) × (4–)5–6(–8) μm (av. = 42 × 5 μm). Macroconidiophores consisting of a stipe, a suite of penicillate arranged fertile branches, a stipe extension, and a terminal vesicle; stipe septate, hyaline, smooth, 12–98 × 4–7 μm, stipe extension septate, straight to flexuous 111–216 μm long, 2–4.5 μm wide at the apical septum, terminating in an ovoid to sphaeropedunculate vesicle, 6–13 μm diam; lateral stipe extensions (90° to main axis) absent. Conidiogenous apparatus 32–94 μm wide, and 49–106 μm long; primary branches aseptate, 12–34 × 4–6 μm; secondary branches aseptate, 4–21 × 3.5–6 μm; tertiary branches aseptate, 9–17 × 4–6 μm, each terminal branch producing 2–4 phialides; phialides elongate doliiform to reniform, hyaline, aseptate, 8–15 × 3–5 μm, apex with minute periclinal thickening and inconspicuous collarette. Macroconidia cylindrical, rounded at both ends, straight, (58–)63–70(–76) × 6–7(–8) μm (av. = 67 × 7 μm), (1–)3-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless slime. Mega- and microconidia not observed.
  • Culture characteristics: Colonies forming abundant white to cinnamon (62) aerial mycelium at 25 °C on MEA, with irregular margins, profuse sporulation; reverse with cinnamon (62) outer margin, and rust (39) inner region after 7 d. Chlamydospores extensive throughout the medium forming microsclerotia. Optimal growth temperature 25 °C, no growth at 5 °C and 35 °C, after 7 d, colonies at 10 °C, 15 °C, 20 °C, 25 °C and 30 °C reached 16.1 mm, 24.9 mm, 54.8 mm, 74.3 mm and 66.4 mm, respectively.
  • Specimens examined: China: Fujian Province, Longyan Region, Zhangping County (25°17′10.882″ N, 117°27′33.635″ E), from soil collected in a Eucalyptus plantation, 6 November 2016, S.F. Chen, Q.L. Liu and F.F. Liu (HMAS249932, culture CSF9862).
  • Notes: Isolates CSF9862 and CSF9863 were crossed with each other on MSA and they were readily formed protoperithecia within two weeks, and perithecia with viable ascospores were produced within four weeks, when they crossed with themselves. Calonectria ilicicola is a species in the Ca. kyotensis species. The ascospores of Ca. ilicicola (av. = 42 × 5.5 μm) obtained in this study were smaller than those of the originally described Ca. ilicicola (av. = 45 × 6 μm) [17], and the macroconidia of Ca. ilicicola (av. = 67 × 7 μm) were larger than those of the originally described Ca. ilicicola (av. = 62 × 6 μm) [17], and they share similar vesicle dimensions.
Calonectria kyotensis
Figure A10. Calonectria kyotensis. (a). Perithecium; (b). vertical section through a perithecium; (c). cells around ostiolar region of perithecium; (d). section through lateral perithecial wall; (e,f). asci; (g,h). ascospores; (ik). macroconidiophore; (ln). sphaeropedunculate vesicles; (o,p). conidiogenous apparatus with conidiophore branches and elongate doliiform to reniform phialides; (q). macroconidia.—Scale bars: a = 200 μm; b = 100 μm; c, d, f, j and k = 20 μm; e and i = 50 μm; g, h and o–q = 10 μm; l–n = 5 μm.
Figure A10. Calonectria kyotensis. (a). Perithecium; (b). vertical section through a perithecium; (c). cells around ostiolar region of perithecium; (d). section through lateral perithecial wall; (e,f). asci; (g,h). ascospores; (ik). macroconidiophore; (ln). sphaeropedunculate vesicles; (o,p). conidiogenous apparatus with conidiophore branches and elongate doliiform to reniform phialides; (q). macroconidia.—Scale bars: a = 200 μm; b = 100 μm; c, d, f, j and k = 20 μm; e and i = 50 μm; g, h and o–q = 10 μm; l–n = 5 μm.
Jof 08 00811 g0a10
  • Description: Ascomata perithecial, solitary or in groups of up to four, orange, becoming red-brown with age; in section, apex and body orange, base dark red-brown, subglobose to ovoid, 322–482 μm high, 296–432 μm diam, body turning red, and base dark red-brown in 3% KOH+; ascomatal wall rough, consisting of two thick-walled layers; outer layer of textura globulosa, 8–24 μm thick, cells becoming more compressed towards the inner layer of textura angularis, 25–59 μm thick, cells becoming thin-walled and hyaline towards the centre; outermost cells 14–25 × 8–13 μm, cells of inner layer 10–30 × 2–6 μm; ascomatal base up to 234 μm wide, consisting of dark red, angular cells, merging with an erumpent stroma; cells of the outer wall layer continuous with the pseudoparenchymatous cells of the erumpent stroma. Asci 8-spored, clavate, 73–125 × 15–29 μm, tapering into a long thin stalk. Ascospores aggregated in the upper third of the ascus, hyaline, guttulate, fusoid with rounded ends, straight to slightly curved, 1(–3)-septate, constricted at the septum, (26–)31–38.5(–43.5) × (5–)5.5–7.5(–9.5) μm (av. = 34.5 × 6.5 μm). Macroconidiophores consisting of a stipe, a suite of penicillate arranged fertile branches, a stipe extension, and a terminal vesicle; stipe septate, hyaline, smooth, 36–135 × 4–9 μm, stipe extension septate, straight to flexuous 69.5–222 μm long, 2–4 μm wide at the apical septum, terminating in a sphaeropedunculate vesicle, 4–10 μm diam; lateral stipe extensions (90° to main axis) abundant, 41–108 μm long, 1–3 μm wide at the apical septum, terminating in sphaeropedunculate vesicles, 3−7 μm. Conidiogenous apparatus 40–110 μm wide, and 36–108 μm long; primary branches aseptate, 14–31 × 4–6 μm; secondary branches aseptate, 9–22 × 3–5 μm; tertiary branches aseptate, 7–16 × 3–5 μm, quaternary branches aseptate, 8−11 × 3–5 μm, each terminal branch producing 2–4 phialides; phialides doliiform to reniform, hyaline, aseptate, 6–10 × 2–4 μm, apex with minute periclinal thickening and inconspicuous collarette. Macroconidia cylindrical, rounded at both ends, straight, (28–)32–35.5(–39.5) × (2.5–)3–4(–4.5) μm (av. = 33.5 × 3.5 μm), 1-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless slime. Mega- and microconidia not observed.
  • Culture characteristics: Colonies forming abundant white to sienna (8) aerial mycelium at 25 °C on MEA, with feather, irregular margins, profuse sporulation; reverse sienna (8) to umber (9) after 7 d. Chlamydospores extensive throughout the medium forming microsclerotia. Optimal growth temperature 25 °C, no growth at 5 °C and 35 °C, after 7 d, colonies at 10 °C, 15 °C, 20 °C, 25 °C and 30 °C reached 16.2 mm, 23.2 mm, 52.1 mm, 66.3 mm and 61.5 mm, respectively.
  • Specimens examined: China: Fujian Province, Zhangzhou Region, Hua’an county (24°53′49.369″ N, 117°32′45.070″ E), from soil collected in a Eucalyptus plantation, 5 November 2016, S.F. Chen, Q.L. Liu and F.F. Liu (HMAS249933, culture CSF9824); Fujian Province, Longyan Region, Liancheng county (25°33′06.994″ N, 116°41′42.328″ E), from soil collected in a Eucalyptus plantation, 6 November 2016, S.F. Chen, Q.L. Liu and F.F. Liu (HMAS249934, culture CSF10004).
  • Notes: Isolates CSF7130, CSF9824 and CSF10004 were crossed with each other in all possible combinations on MSA. Isolates CSF9824 readily formed protoperithecia within two weeks. After eight weeks of incubation, isolates CSF7130 and CSF10004 failed to form sexual structures in any combination. Calonectria kyotensis is a species in the Ca. kyotensis species. The ascospores of Ca. kyotensis (av. = 34.5 × 6.5 μm) obtained in this study were longer than those of the originally described Ca. kyotensis (av. = 29 × 6 μm) [47], while the macroconidia of Ca. kyotensis (av. = 33.5 × 3.5 μm) in this study were shorter than those of the originally described Ca. kyotensis (av. = 41 × 4 μm) [47], and the vesicle in this study (4–10 μm) was narrower than those of originally described Ca. kyotensis (8.8–19 μm) [47].
Calonectria pacifica
Figure A11. Calonectria pacifica. (ac). Macroconidiophore; (dg). ovoid to sphaeropedunculate vesicles; (hj). conidiogenous apparatus with conidiophore branches and doliiform to reniform phialides; (k,l). macroconidia.—Scale bars: a–c = 20 μm; d–g = 5 μm; h–l = 10 μm.
Figure A11. Calonectria pacifica. (ac). Macroconidiophore; (dg). ovoid to sphaeropedunculate vesicles; (hj). conidiogenous apparatus with conidiophore branches and doliiform to reniform phialides; (k,l). macroconidia.—Scale bars: a–c = 20 μm; d–g = 5 μm; h–l = 10 μm.
Jof 08 00811 g0a11
  • Description: Sexual morph unknown. Macroconidiophores consisting of a stipe, a suite of penicillate arranged fertile branches, a stipe extension, and a terminal vesicle; stipe septate, hyaline, smooth, 44–115 × 4–7 µm; stipe extensions septate, straight to flexuous 73.5–171 µm long, 2–3.5 µm wide, at the apical septum, terminating in an ovoid to sphaeropedunculate vesicle, 4–10 µm diam; lateral stipe extensions (90° to main axis) abundant, 36–98 μm long, 1.5–2.5 μm wide at the apical septum, terminating in an ovoid vesicles, 3–5 µm diam. Conidiogenous apparatus 45–105 μm wide, and 35–81 μm long; primary branches aseptate, 12.5–23 × 4–6 μm; secondary branches aseptate, 10–20 × 3–6 μm; tertiary branches aseptate, 10–15 × 3–5 μm, each terminal branch producing 2–4 phialides; phialides doliiform to reniform, hyaline, aseptate, 6−15 × 3–5 μm, apex with minute periclinal thickening and inconspicuous collarette. Macroconidia cylindrical, rounded at both ends, straight, (36–)40–46(–48) × (3.5–)4–5(–6) μm, (av. = 43 × 5 μm), 1-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless slime. Mega- and microconidia not observed.
  • Culture characteristics: Colonies forming sparse white to sienna (8) aerial mycelium at 25 °C on MEA, with feathery, irregular margins at the edges, abundant sporulation; reverse sienna (8) to umber (9) after 7 d. Optimal growth temperature 25 °C, no growth at 5 °C and 35 °C, after 7 d, colonies at 10 °C, 15 °C, 20 °C, 25 °C and 30 °C reached 15.1 mm, 21.4 mm, 45.1 mm, 58.2 mm and 42.1 mm, respectively.
  • Specimens examined: China: Fujian Province, Nanping Region, Yanping District (26°42′26.672″ N, 118°07′58.317″ E), from soil under a natural forest, 08 November 2016, S.F. Chen, Q.L. Liu and F.F. Liu (HMAS249938, culture CSF10070); Fujian Province: Nanping Region, Yanping District (26°42′26.672″ N, 118°07′58.317″ E), from soil under a natural forest, 08 November 2016, S.F. Chen, Q.L. Liu and F.F. Liu (HMAS249939, culture CSF10077).
  • Notes: Isolates CSF10024, CSF10070 and CSF10077 were crossed with each other in all possible combinations on MSA and failed to form sexual structures in any combination. Calonectria pacifica is a species in the Ca. kyotensis species complex. The macroconidia of Ca. pacifica (av. = 43 × 5 μm) obtained in this study were shorter than those of the originally described Ca. pacifica (av. = 55 × 4.5 μm) [17], and the vesicles were narrower than those of originally described strains of Ca. pacifica (7–15 μm) [17].
Calonectria pseudoreteaudii
Figure A12. Calonectria pseudoreteaudii. (ac). Macroconidiophore; (df). clavate to narrowly clavate vesicle; (gi) conidiogenous apparatus with conidiophore branches and cylindrical to allantoid phialides; (jl). macroconidia.—Scale bars: a–c = 20 μm; d–f = 5 μm; g–l = 10 μm.
Figure A12. Calonectria pseudoreteaudii. (ac). Macroconidiophore; (df). clavate to narrowly clavate vesicle; (gi) conidiogenous apparatus with conidiophore branches and cylindrical to allantoid phialides; (jl). macroconidia.—Scale bars: a–c = 20 μm; d–f = 5 μm; g–l = 10 μm.
Jof 08 00811 g0a12
  • Description: Sexual morph unknown. Macroconidiophores consisting of a stipe, a suite of penicillate arranged fertile branches, a stipe extension, and a terminal vesicle; stipe septate, hyaline, smooth, 81–145 × 3–8 µm; stipe extensions septate, straight to flexuous 150–268 µm long, 5–7 µm wide, at the apical septum, terminating in a narrowly clavate vesicle, 3–5 µm diam. Conidiogenous apparatus 68–140 µm long, and 30–92 µm wide; primary branches aseptate or 1-septate, 19–34 × 4–6 μm; secondary branches aseptate, 16–25 × 4–5 μm; tertiary branches aseptate, 13–22 × 3–5 μm, each terminal branch producing 1–3 phialides; phialides cylindrical to allantoid, hyaline, aseptate, 10−18 × 3–5 μm, apex with minute periclinal thickening and inconspicuous collarette. Macroconidia cylindrical, rounded at the apex, flattened at the base, straight, (54.5–)73–88.5(–96) × (6–)6.5–8(–9) μm, (av. = 81 × 7.5 μm), 5-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless slime. Mega- and microconidia not observed.
  • Culture characteristics: Colonies forming white to sienna (8) aerial mycelium at 25 °C on MEA, with feathery, regular margins at the edges, abundant sporulation; reverse sienna (8) to chestnut (40) after 7 d; chlamydospores extensive throughout the medium, forming microsclerotia. Optimal growth temperature 25 °C, no growth at 5 °C and 35 °C, after 7 d, colonies at 10 °C, 15 °C, 20 °C, 25 °C and 30 °C reached 19.3 mm, 25.1 mm, 49.2 mm, 59.1 mm and 47.1 mm, respectively.
  • Specimens examined: China: Fujian Province, Nanping Region, Yanping District (26°46′19.651″ N, 117°57′37.233″ E), from soil collected in a Eucalyptus plantation, 08 November 2016, S.F. Chen, Q.L. Liu and F.F. Liu (HMAS249940, culture CSF10059); Fujian Province: Nanping Region, Yanping District (26°46′19.651″ N, 117°57′37.233″ E), from soil collected in a Eucalyptus plantation, 08 November 2016, S.F. Chen, Q.L. Liu and F.F. Liu (HMAS249941, culture CSF10060).
  • Notes: Isolates CSF10059 and CSF10060 were crossed with each other on MSA and failed to form sexual structures in any combination. Calonectria pseudoreteaudii is a species in the Ca. reteaudii species complex. The macroconidia of isolates obtained in this study (av. = 81 × 7.5 μm) were much shorter than those of the originally described strains of Ca. pseudoreteaudii (av. = 104 × 8 μm) [24].

References

  1. Liu, T.; Xie, Y.J. Studies on the causes of rapid development of Eucalyptus plantations in China. Eucalyptus Sci. Technol. 2020, 27, 38–47. (In Chinese) [Google Scholar]
  2. Zhou, X.D.; Wingfield, M.J. Eucalypt diseases and their management in China. Australas. Plant Pathol. 2011, 40, 339–345. [Google Scholar] [CrossRef]
  3. Carstensen, G.D.; Venter, S.N.; Wingfield, M.J.; Coutinho, T.A. Two Ralstonia species associated with bacterial wilt of Eucalyptus. Plant Pathol. 2017, 66, 393–403. [Google Scholar] [CrossRef]
  4. Li, J.Q.; Wingfield, M.J.; Liu, Q.L.; Barnes, I.; Roux, J.; Lombard, L.; Crous, P.W.; Chen, S.F. Calonectria species isolated from Eucalyptus plantations and nurseries in South China. IMA Fungus 2017, 8, 259–294. [Google Scholar] [CrossRef]
  5. Li, G.Q.; Liu, F.F.; Li, J.Q.; Liu, Q.L.; Chen, S.F. Botryosphaeriaceae from Eucalyptus plantations and adjacent plants in China. Persoonia 2018, 40, 63–95. [Google Scholar] [CrossRef]
  6. Wang, W.; Li, G.Q.; Liu, Q.L.; Chen, S.F. Cryphonectriaceae on Myrtales in China: Phylogeny, host range, and pathogenicity. Persoonia 2020, 45, 101–131. [Google Scholar] [CrossRef]
  7. Chen, S.F.; Lombard, L.; Roux, J.; Xie, Y.J.; Wingfield, M.J.; Zhou, X.D. Novel species of Calonectria associated with Eucalyptus leaf blight in Southeast China. Persoonia 2011, 26, 1–12. [Google Scholar] [CrossRef]
  8. Ye, X.Z.; Zhong, Z.H.; Liu, H.Y.; Lin, L.Y.; Guo, M.M.; Guo, W.S.; Wang, Z.H.; Zhang, Q.H.; Feng, L.Z.; Lu, G.D.; et al. Whole genome and transcriptome analyses reveal adaptive strategies and pathogenesis of Calonectria pseudoreteaudii to Eucalyptus. BMC Genom. 2018, 19, 358. [Google Scholar] [CrossRef]
  9. Wang, Q.C.; Chen, S.F. Calonectria pentaseptata causes severe leaf disease on cultivated Eucalyptus in Leizhou Peninsula of southern China. Plant Dis. 2020, 104, 493–509. [Google Scholar] [CrossRef]
  10. Wu, W.X.; Chen, S.F. Species diversity, mating strategy and pathogenicity of Calonectria species from diseased leaves and soils in the Eucalyptus plantation in Southern China. J. Fungi 2021, 7, 73. [Google Scholar] [CrossRef]
  11. Lombard, L.; Chen, S.F.; Mou, X.; Zhou, X.D.; Crous, P.W.; Wingfield, M.J. New species, hyper-diversity and potential importance of Calonectria spp. from Eucalyptus in South China. Stud. Mycol. 2015, 80, 151–188. [Google Scholar] [CrossRef]
  12. Booth, T.H.; Jovanovic, T.; Old, K.M.; Dudzinski, M.J. Climatic mapping to identify high-risk areas for Cylindrocladium quinqueseptatum leaf blight on eucalypts in mainland South East Asia and around the world. Environ. Pollut. 2000, 108, 365–372. [Google Scholar] [CrossRef]
  13. Park, R.F.; Keane, P.J.; Wingfield, M.J.; Crous, P.W.; Kile, G.A.; Podger, F.D.; Brown, B.N. Fungal disease of eucalypt foliage. In Disease and Pathogens of Eucalypts; Keane, P.J., Kile, G.A., Podger, F.D., Brown, B.N., Eds.; CSIRO Publishing: Clayton, Australia, 2000; pp. 153–239. [Google Scholar]
  14. Alfenas, R.F.; Lombard, L.; Pereira, O.L.; Alfenas, A.C.; Crous, P.W. Diversity and potential impact of Calonectria species in Eucalyptus plantations in Brazil. Stud. Mycol. 2015, 80, 89–130. [Google Scholar] [CrossRef]
  15. Jessadarom, H.; Phetruang, W.; Haitook, S.; Cheewangkoon, R. Isolation of Calonectria sulawesiensis from soil in Thailand and its pathogenicity against Eucalyptus camaldulensis. Plant Pathol. Quar. 2018, 8, 1–8. [Google Scholar] [CrossRef]
  16. Pham, N.; Barnes, I.; Chen, S.F.; Liu, F.F.; Dang, Q.N.; Pham, T.Q.; Lombard, L.; Crous, P.W.; Wingfield, M.J. Ten new species of Calonectria from Indonesia and Vietnam. Mycologia 2019, 111, 78–102. [Google Scholar] [CrossRef]
  17. Crous, P.W. Taxonomy and Pathology of Cylindrocladium (Calonectria) and Allied Genera; APS Press: St. Paul, MN, USA, 2002. [Google Scholar]
  18. Liu, Q.L.; Li, J.Q.; Wingfield, M.J.; Duong, T.A.; Wingfield, B.D.; Crous, P.W.; Chen, S.F. Reconsideration of species boundaries and proposed DNA barcodes for Calonectria. Stud. Mycol. 2020, 97, 100106. [Google Scholar] [CrossRef]
  19. Crous, P.W.; Luangsa-Ard, J.J.; Wingfield, M.J.; Carnegie, A.J.; Hernández-Restrepo, M.; Lombard, L.; Roux, J.; Barreto, R.W.; Baseia, I.G.; Cano-Lira, J.F.; et al. Fungal Planet description sheets: 785–867. Persoonia 2018, 41, 238–417. [Google Scholar] [CrossRef]
  20. Crous, P.W.; Carnegie, A.J.; Wingfield, M.J.; Sharma, R.; Mughini, G.; Noordeloos, M.E.; Santini, A.; Shouche, Y.S.; Bezerra, J.P.D.; Dima, B.; et al. Fungal Planet description sheets: 868–950. Persoonia 2019, 42, 291–473. [Google Scholar] [CrossRef]
  21. Wang, Q.C.; Liu, Q.L.; Chen, S.F. Novel species of Calonectria isolated from soil near Eucalyptus plantations in southern China. Mycologia 2019, 111, 1028–1040. [Google Scholar] [CrossRef]
  22. Crous, P.W.; Hernández-Restrepo, M.; Schumacher, R.K.; Cowan, D.A.; Maggs-Kölling, G.; Marais, E.; Wingfield, M.J.; Yilmaz, N.; Adan, O.C.G.; Akulov, A.; et al. New and Interesting Fungi. 4. Fungal Syst. Evol. 2021, 7, 255–343. [Google Scholar] [CrossRef]
  23. Crous, P.W.; Groenewald, J.Z.; Risède, J.M.; Simoneau, P.; Hywel-Jones, N.L. Calonectria species and their Cylindrocladium anamorphs: Species with sphaeropedunculate vesicles. Stud. Mycol. 2004, 50, 415–430. [Google Scholar]
  24. Lombard, L.; Zhou, X.D.; Crous, P.W.; Wingfield, B.D.; Wingfield, M.J. Calonectria species associated with cutting rot of Eucalyptus. Persoonia 2010, 24, 1–11. [Google Scholar] [CrossRef]
  25. Liu, Q.L.; Chen, S.F. Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 2017, 26, 25–60. [Google Scholar] [CrossRef]
  26. Liu, L.L.; Wu, W.X.; Chen, S.F. Species diversity and distribution characteristics of Calonectria in five soil layers in a Eucalyptus Plantation. J. Fungi 2021, 7, 857. [Google Scholar] [CrossRef]
  27. Van Burik, J.A.H.; Schreckhise, R.W.; White, T.C.; Bownen, R.A. Comparison of six extraction techniques for isolation of DNA from filamentous fungi. Med. Mycol. 1998, 36, 299–303. [Google Scholar] [CrossRef]
  28. Kearse, M.; Moir, R.; Wilson, A.; Stones-Havas, S.; Cheung, M.; Sturrock, S.; Buxton, S.; Cooper, A.; Markowitz, S.; Duran, C.; et al. Geneious Basic: An integrated and extendable desktop software platform for the organization and analyses of sequence data. Bioinformatics 2012, 28, 1647–1649. [Google Scholar] [CrossRef]
  29. Katoh, K.; Standley, D.M. MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Mol. Biol. Evol. 2013, 30, 772–780. [Google Scholar] [CrossRef]
  30. Tamura, K.; Stecher, G.; Peterson, D.; Filipski, A.; Kumar, S. MEGA6: Molecular evolutionary genetics analyses version 6.0. Mol. Biol. Evol. 2013, 30, 2725–2729. [Google Scholar] [CrossRef]
  31. Swofford, D.L. Phylogenetic Analyses Using Parsimony (*and Other Methods); V. 4.0b10; Sinauer Associates: Sunderland, MA, USA, 2003. [Google Scholar]
  32. Guindon, S.; Gascuel, O. A simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood. Syst. Biol. 2003, 52, 696–704. [Google Scholar] [CrossRef]
  33. Farris, J.S.; Källersjö, M.; Kluge, A.G.; Bult, C. Testing significance of incongruence. Cladistics 1994, 10, 315–319. [Google Scholar] [CrossRef]
  34. Felsenstein, J. Confidence intervals on phylogenetics: An approach using bootstrap. Evolution 1985, 39, 783–791. [Google Scholar] [CrossRef] [PubMed]
  35. Posada, D. jModelTest: Phylogenetic model averaging. Mol. Biol. Evol. 2008, 25, 1253–1256. [Google Scholar] [CrossRef] [PubMed]
  36. Gadgil, P.D.; Dick, M.A. Fungi silvicolae novazelandae: 5. N. Z. J. For. Sci. 2004, 34, 316–323. [Google Scholar]
  37. Lombard, L.; Crous, P.W.; Wingfield, B.D.; Wingfield, M.J. Phylogeny and systematics of the genus Calonectria. Stud. Mycol. 2010, 66, 31–69. [Google Scholar] [CrossRef]
  38. Crous, P.W.; Groenewald, J.Z.; Risède, J.M.; Simoneau, P.; Hyde, K.D. Calonectria species and their Cylindrocladium anamorphs: Species with clavate vesicles. Stud. Mycol. 2006, 55, 213–226. [Google Scholar] [CrossRef]
  39. Lombard, L.; Wingfield, M.J.; Alfenas, A.C.; Crous, P.W. The forgotten Calonectria collection: Pouring old wine into new bags. Stud. Mycol. 2016, 85, 159–198. [Google Scholar] [CrossRef]
  40. Kang, J.C.; Crous, P.W.; Schoch, C.L. Species concepts in the Cylindrocladium floridanum and Cy. spathiphylli complexes (Hypocreaceae) based on multi-allelic sequence data, sexual compatibility and morphology. Syst. Appl. Microbiol. 2001, 24, 206–217. [Google Scholar] [CrossRef]
  41. Lechat, C.; Crous, P.W.; Groenewald, J.Z. The enigma of Calonectria species occurring on leaves of Ilex aquifolium in Europe. IMA Fungus 2010, 1, 101–108. [Google Scholar] [CrossRef]
  42. Peerally, M.A. Calonectria colhounii sp. nov., a common parasite of tea in Mauritius. Trans. Br. Mycol. Soc. 1973, 61, 89–93. [Google Scholar] [CrossRef]
  43. Victor, D.; Crous, P.W.; Janse, B.J.H.; Wingfield, M.J. Genetic variation in Cylindrocladium floridanum and other morphologically similar Cylindrocladium species. Syst. Appl. Microbiol. 1997, 20, 268–285. [Google Scholar] [CrossRef]
  44. Boedijn, K.B.; Reitsma, J. Notes on the genus Cylindrocladium (Fungi: Mucedineae). Reinwardtia 1950, 1, 51–60. [Google Scholar]
  45. Marin-Felix, Y.; Groenewald, J.Z.; Cai, L.; Chen, Q.; Marincowitz, S.; Barnes, I.; Bensch, K.; Braun, U.; Camporesi, E.; Damm, U.; et al. Genera of phytopathogenic fungi: GOPHY 1. Stud. Mycol. 2017, 86, 99–216. [Google Scholar] [CrossRef]
  46. Crous, P.W.; Kang, J.C.; Schoch, C.L.; Mchau, G.R.A. Phylogenetic relationships of Cylindrocladium pseudogracile and Cylindrocladium rumohrae with morphologically similar taxa, based on morphology and DNA sequences of internal transcribed spacers and β-tubulin. Can. J. Bot. 1999, 77, 1813–1820. [Google Scholar] [CrossRef]
  47. Terashita, T. A new species of Calonectria and its conidial state. Trans. Mycol. Soc. Jpn. 1968, 8, 124–129. [Google Scholar]
  48. Crous, P.W.; Wingfield, M.J.; Alfenas, A.C. Additions to Calonectria. Mycotaxon 1993, 46, 217–234. [Google Scholar]
  49. Crous, P.W.; Wingfield, M.J.; Le Roux, J.J.; Richardson, D.M.; Strasberg, D.; Shivas, R.G.; Alvarado, P.; Edwards, J.; Moreno, G.; Sharma, R.; et al. Fungal Planet description sheets: 371–399. Persoonia 2015, 35, 264–327. [Google Scholar] [CrossRef]
  50. Crous, P.W.; Wingfield, M.J.; Mohammed, C.; Yuan, Z.Q. New foliar pathogens of Eucalyptus from Australia and Indonesia. Mycol. Res. 1998, 102, 527–532. [Google Scholar] [CrossRef]
  51. Tubaki, K. Studies on the Japanese Hyphomycetes. V. Leaf & stem group with a discussion of the classification of Hyphomycetes and their perfect stages. J. Hattori Bot. Lab. 1958, 20, 142–244. [Google Scholar]
  52. Kang, J.C.; Crous, P.W.; Old, K.M.; Dudzinski, M.J. Non-conspecificity of Cylindrocladium quinqueseptatum and Calonectria quinqueseptata based on a β-tubulin gene phylogeny and morphology. Can. J. Bot. 2001, 79, 1241–1247. [Google Scholar] [CrossRef]
  53. Decock, C.; Crous, P.W. Curvicladium gen. nov., a new hyphomycete genus from French Guiana. Mycologia 1998, 90, 276–281. [Google Scholar] [CrossRef]
  54. Guerber, J.C.; Correll, J.C. Characterization of Glomerella acutata, the teleomorph of Colletotrichum acutatum. Mycologia 2001, 93, 216–229. [Google Scholar] [CrossRef]
  55. Nirenburg, H.I. A simplified method for identifying Fusarium spp. occurring on wheat. Can. J. Bot. 1981, 59, 1599–1609. [Google Scholar] [CrossRef]
  56. Rayner, R.W. A Mycological Colour Chart; Commonwealth Mycological Institute: Kew, UK, 1970. [Google Scholar]
  57. Cunningham, C.W. Can three incongruence tests predict when data should be combined? Mol. Biol. Evol. 1997, 14, 733–740. [Google Scholar] [CrossRef]
  58. Pan, R.; Deng, Q.; Xu, D.; Meng, M.; Chen, W. First Report of Peanut Cylindrocladium Black Rot Caused by Cylindrocladium parasiticum in Fujian Province, Eastern China. Plant Dis. 2012, 99, 890. [Google Scholar] [CrossRef] [PubMed]
Figure 1. Different forest plantations and natural forests in southern China. (a). mixed species plantations in Zhangzhou Region, Fujian Province, 1: Eucalyptus sp., 2: Pinus massoniana, 3: Cunninghamia lanceolata; (b). mixed species plantations in Jiangxi Province, 1: Eucalyptus sp., 3: Cunninghamia lanceolata; 4: Phyllostachys heterocycle; (c). Eucalyptus sp. in Yongan Region, Fujian Province; (d). Cunninghamia lanceolata in JiangXi Province; (e). Phyllostachys heterocycle in Nanping Region, Fujian Province; (f). natural forests in Nanping Region, Fujian Province. Soil samples in this study were collected from Fujian Province.
Figure 1. Different forest plantations and natural forests in southern China. (a). mixed species plantations in Zhangzhou Region, Fujian Province, 1: Eucalyptus sp., 2: Pinus massoniana, 3: Cunninghamia lanceolata; (b). mixed species plantations in Jiangxi Province, 1: Eucalyptus sp., 3: Cunninghamia lanceolata; 4: Phyllostachys heterocycle; (c). Eucalyptus sp. in Yongan Region, Fujian Province; (d). Cunninghamia lanceolata in JiangXi Province; (e). Phyllostachys heterocycle in Nanping Region, Fujian Province; (f). natural forests in Nanping Region, Fujian Province. Soil samples in this study were collected from Fujian Province.
Jof 08 00811 g001
Figure 2. Calonectria species collected from nine counties (districts) in Fujian Province. (ai). the percentage of each species in nine different counties (districts). Different species are indicated by numbers with different colours.
Figure 2. Calonectria species collected from nine counties (districts) in Fujian Province. (ai). the percentage of each species in nine different counties (districts). Different species are indicated by numbers with different colours.
Jof 08 00811 g002
Figure 3. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of combined DNA dataset of act, cmdA, his3, rpb2, tef1, and tub2 gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented above the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Figure 3. Phylogenetic tree of Calonectria species based on maximum likelihood (ML) analyses of combined DNA dataset of act, cmdA, his3, rpb2, tef1, and tub2 gene sequences. Bootstrap value ≥70% for ML and MP analyses are presented above the branches. Bootstrap values lower than 70% are marked with “*”, and absent analyses values are marked with “-”. Ex-type isolates are marked with “T”. Isolates sequenced in this study are highlighted in blue and bold type. The “B” species codes are consistent with the recently published results in Liu and co-authors [18]. The tree was rooted to Curvicladiella cignea (CBS 109167 and CBS 109168).
Jof 08 00811 g003aJof 08 00811 g003b
Figure 4. Calonectria minensis. (a) Perithecium; (b) vertical section through a perithecium; (c) cells around ostiolar region of perithecium; (d) section through lateral perithecial wall; (e,f) asci; (g,h) ascospores; (i,j) macroconidiophore; (k,m) clavate vesicles; (n,o) conidiogenous apparatus with conidiophore branches and elongate doliiform to reniform phialides; (p,q) macroconidia.—Scale bars: a = 200 μm; b = 100 μm; c, d and f = 20 μm; e and i, j = 50 μm; g, h and n–q = 10 μm; k, m = 5 μm.
Figure 4. Calonectria minensis. (a) Perithecium; (b) vertical section through a perithecium; (c) cells around ostiolar region of perithecium; (d) section through lateral perithecial wall; (e,f) asci; (g,h) ascospores; (i,j) macroconidiophore; (k,m) clavate vesicles; (n,o) conidiogenous apparatus with conidiophore branches and elongate doliiform to reniform phialides; (p,q) macroconidia.—Scale bars: a = 200 μm; b = 100 μm; c, d and f = 20 μm; e and i, j = 50 μm; g, h and n–q = 10 μm; k, m = 5 μm.
Jof 08 00811 g004
Figure 5. Calonectria species collected from soils of five different types of forests in Fujian Province. (a). the percentage of each Calonectria species accounted for all of the species isolated in this study. Different species are indicated by numbers with different colours; (bf). the percentage of each Calonectria species obtained from five different types of forests.
Figure 5. Calonectria species collected from soils of five different types of forests in Fujian Province. (a). the percentage of each Calonectria species accounted for all of the species isolated in this study. Different species are indicated by numbers with different colours; (bf). the percentage of each Calonectria species obtained from five different types of forests.
Jof 08 00811 g005
Table 1. Details of soils sampled, associated forest types and Calonectria spp. isolated.
Table 1. Details of soils sampled, associated forest types and Calonectria spp. isolated.
CodeSampling SiteSubstrateNumber of
Samples
Number of Samples
Obtained Calonectria
Number of alonectria
Isolates Obtained
Calonectria spp.
(Number of Isolates)
aYanping DistrictEucalyptus plantation5312Ca. aconidialis (7); Ca. pseudoreteaudii (5)
natural forest13310Ca. aconidialis (3); Ca. pacifica (7)
Cunninghamia lanceolata1000N/A a
bMinhou CountyEucalyptus plantation151251Ca. aconidialis (28); Ca. kyotensis (17);
Ca. hongkongensis (4); Ca. pacifica (2)
cCangshan Districtnatural forest3311Ca. kyotensis (5); Ca. hongkongensis (6)
dQingliu Countynatural forest1000N/A
Cunninghamia lanceolata1129Ca. aconidialis (5); Ca. kyotensis (4)
Pinus massoniana1015Ca. kyotensis (5)
eYongan CountyEucalyptus plantation27728Ca. aconidialis (12); Ca. kyotensis (8);
Ca. pacifica (8)
fLiancheng CountyEucalyptus plantation20420Ca. kyotensis (20)
natural forest17840Ca. aconidialis (27); Ca. kyotensis (8);
Ca. minensis (5)
gZhangping CountyEucalyptus plantation201571Ca. aconidialis (66); Ca. ilicicola (5)
hXinluo DistrictEucalyptus plantation19416Ca. aconidialis (6); Ca. kyotensis (7);
Ca. minensis (3)
Phyllostachys heterocycle14525Ca. aconidialis (5); Ca. kyotensis (20)
iHua’an CountyEucalyptus plantation151255Ca. aconidialis (19); Ca. kyotensis (9);
Ca. hongkongensis (27)
In total20979353
a N/A refers to samples that did not yield Calonectria isolates.
Table 2. Isolates sequenced in this study and used for phylogenetic analyses and morphological studies.
Table 2. Isolates sequenced in this study and used for phylogenetic analyses and morphological studies.
Species aIsolate No. b,cGenotype dSubstrateSampling SiteGPS CoordinateCollectorGenBank Accession No. e
actcmdAhis3rpb2tef1tub2
Calonectria
aconidialis
CSF9779AAA-AASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253064OK253135OK253279N/A fOK253491OK253844
CSF9857AAAAAASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253065OK253136OK253280OK253423OK253492OK253845
CSF9937AAAABASoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253066OK253137OK253281OK253424OK253493OK253846
CSF9938AAAABASoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253067OK253138OK253282OK253425OK253494OK253847
CSF9939AAAABASoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253068OK253139OK253283OK253426OK253495OK253848
CSF9809ABAAAASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253069OK253140OK253284OK253427OK253496OK253849
CSF10105ABAAAASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253070OK253141OK253285OK253428OK253497OK253850
CSF9789ABAAABSoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253071OK253142OK253286OK253429OK253498OK253851
CSF9839ABAAACSoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253072OK253143OK253287OK253430OK253499OK253852
CSF9844ABAAACSoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253073OK253144OK253288OK253431OK253500OK253853
CSF9882ABAAADSoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253074OK253145OK253289OK253432OK253501OK253854
CSF9987ABAAADSoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253075OK253146OK253290OK253433OK253502OK253855
CSF9813ABAACASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253076OK253147OK253291OK253434OK253503OK253856
CSF9841ABAACASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253077OK253148OK253292OK253435OK253504OK253857
CSF9870ABBAAASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253078OK253149OK253293OK253436OK253505OK253858
CSF9875ABB-AASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253079OK253150OK253294N/AOK253506OK253859
CSF9957ACBAAASoil (natural forest area)Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253080OK253151OK253295OK253437OK253507OK253860
Ca.
hongkongensis
CSF7124AAAAAASoil (natural forest area)Cangshan, Fuzhou,
Fujian, China
26°5′16.2″ N,
119°14′19.8″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253081OK253192OK253336OK253438OK253669OK253900
CSF9784AAAAAASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253082OK253193OK253337OK253439OK253670OK253901
CSF9794ABAAAASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253083OK253194OK253338OK253440OK253671OK253902
CSF9799ABAAAASoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253084OK253195OK253339OK253441OK253672OK253903
Ca. ilicicolaCSF9862AAAAAASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253085OK253202OK253346OK253442OK253706OK253910
CSF9863AAAAAASoil
(Eucalyptus plantation)
Zhangping, Longyan,
Fujian, China
25°17′10.882″ N,
117°27′33.635″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253086OK253203OK253347OK253443OK253707OK253911
Ca. kyotensisCSF7130AAAAAASoil
(natural forest area)
Cangshan, Fuzhou,
Fujian, China
26°5′16.2″ N,
119°14′19.8″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253087OK253207OK253351OK253444OK253711OK253915
CSF10088AAAAAASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253088OK253208OK253352OK253445OK253712OK253916
CSF9834AAA-ABSoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°58′22.263″ N,
117°31′09.708″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253089OK253209OK253353N/AOK253713OK253917
CSF9910AAAAABSoil
(Phyllostachys
heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253090OK253210OK253354OK253446OK253714OK253918
CSF10014AAAAACSoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253091OK253211OK253355OK253447OK253715OK253919
CSF10080AAAAADSoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253092OK253212OK253356OK253448OK253716OK253920
CSF10086AAAAAESoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253093OK253213OK253357OK253449OK253717OK253921
CSF10053AAAABBSoil
(Pinus massoniana)
Qingliu, Sanming,
Fujian, China
26°10′54.311″ N,
116°52′50.901″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253094OK253214OK253358OK253450OK253718OK253922
CSF10054AAAABBSoil
(Pinus massoniana)
Qingliu, Sanming,
Fujian, China
26°10′54.311″ N,
116°52′50.901″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253095OK253215OK253359OK253451OK253719OK253923
CSF9922AAAABFSoil
(Phyllostachys
heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253096OK253216OK253360OK253452OK253720OK253924
CSF9923AAAABFSoil
(Phyllostachys
heterocycla)
Xinluo, Longyan,
Fujian, China
25°07′31.133″ N,
116°51′37.485″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253097OK253217OK253361OK253453OK253721OK253925
CSF9949AAAADBSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253098OK253218OK253362OK253454OK253722OK253926
CSF9951AAAADBSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253099OK253219OK253363OK253455OK253723OK253927
CSF9932AAAADGSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253100OK253220OK253364OK253456OK253724OK253928
CSF9935AAAADGSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253101OK253221OK253365OK253457OK253725OK253929
CSF9936AAAADGSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253102OK253222OK253366OK253458OK253726OK253930
CSF10020AAAAEASoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253103OK253223OK253367OK253459OK253727OK253931
CSF10021AAAAEASoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253104OK253224OK253368OK253460OK253728OK253932
CSF10009AAABBHSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253105OK253225OK253369OK253461OK253729OK253933
CSF10010AAABBHSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253106OK253226OK253370OK253462OK253730OK253934
CSF9997AABAABSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253107OK253227OK253371OK253463OK253731OK253935
CSF9969AABACBSoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253108OK253228OK253372OK253464OK253732OK253936
CSF9972AABACBSoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253109OK253229OK253373OK253465OK253733OK253937
CSF9973AABACBSoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253110OK253230OK253374OK253466OK253734OK253938
CSF10126AACAAASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253111OK253231OK253375OK253467OK253735OK253939
CSF9962AACAADSoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253112OK253232OK253376OK253468OK253736OK253940
CSF10019AADABBSoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253113OK253233OK253377OK253469OK253737OK253941
CSF10022AADABBSoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253114OK253234OK253378OK253470OK253738OK253942
CSF10023AADABBSoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253115OK253235OK253379OK253471OK253739OK253943
CSF10045ABAAABSoil
(Cunninghamia
lanceolata)
Qingliu, Sanming,
Fujian, China
26°07′23.497″ N,
116°53′00.762″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253116OK253236OK253380OK253472OK253740OK253944
CSF10047ABAAABSoil
(Cunninghamia
lanceolata)
Qingliu, Sanming,
Fujian, China
26°07′23.497″ N,
116°53′00.762″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253117OK253237OK253381OK253473OK253741OK253945
CSF9824ACBAACSoil
(Eucalyptus plantation)
Hua’an, Zhangzhou,
Fujian, China
24°53′49.369″ N,
117°32′45.070″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253118OK253238OK253382OK253474OK253742OK253946
CSF10004ADAACBSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253119OK253239OK253383OK253475OK253743OK253947
CSF10005ADAACBSoil
(Eucalyptus plantation)
Liancheng, Longyan,
Fujian, China
25°33′06.994″ N,
116°41′42.328″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253120OK253240OK253384OK253476OK253744OK253948
Ca. minensis
sp. nov.
CSF9941 g–i;
CGMCC3.18877
AAAAAASoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253121OK253259OK253403OK253477OK253814OK253967
CSF9974AAAAAASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253122OK253260OK253404OK253478OK253815OK253968
CSF9975 g,h;
CGMCC3.18881
AAAAAASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253123OK253261OK253405OK253479OK253816OK253969
CSF9976AAAAAASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253124OK253262OK253406OK253480OK253817OK253970
CSF9977AAAAAASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253125OK253263OK253407OK253481OK253818OK253971
CSF9978AAAAAASoil
(natural forest area)
Liancheng, Longyan,
Fujian, China
25°26′14.348″ N,
116°38′42.400″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253126OK253264OK253408OK253482OK253819OK253972
CSF9933 g,h;
CGMCC3.18875
ABBABBSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253127OK253265OK253409OK253483OK253820OK253973
CSF9934ABBABBSoil
(Eucalyptus plantation)
Xinluo, Longyan,
Fujian, China
25°07′08.597″ N,
116°44′42.257″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253128OK253266OK253410OK253484OK253821OK253974
Ca. pacificaCSF10024AAAAAASoil
(Eucalyptus plantation)
Yongan, Sanming,
Fujian, China
25°55′10.860″ N,
117°16′39.591″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253129OK253267OK253411OK253485OK253822OK253975
CSF10129BAAAAASoil
(Eucalyptus plantation)
Minhou, Fuzhou,
Fujian, China
26°15′04.285″ N,
119°02′38.917″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253130OK253268OK253412OK253486OK253823OK253976
CSF10070CABAAASoil
(natural forest area)
Yanping, Nanping,
Fujian, China
26°42′26.672″ N,
118°07′58.317″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253131OK253269OK253413OK253487OK253824OK253977
CSF10077CABAAASoil
(natural forest area)
Yanping, Nanping,
Fujian, China
26°42′26.672″ N,
118°07′58.317″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253132OK253270OK253414OK253488OK253825OK253978
Ca.
pseudoreteaudii
CSF10059AAAAAASoil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253133OK253274OK253418OK253489OK253839OK253982
CSF10060 g,hAAAAAASoil
(Eucalyptus plantation)
Yanping, Nanping,
Fujian, China
26°46′19.651″ N,
117°57′37.233″ E
S.F. Chen, Q.L. Liu and F.F. LiuOK253134OK253275OK253419OK253490OK253840OK253983
a New species described in this study are indicated in bold. b CSF = Culture Collection from Southern Forests (CSF), ZhanJiang, Guangdong Province, China; CGMCC = China General Microbiological Culture Collection Center, Beijing, China. c Isolates used in phylogenetic analyses. d Genotype within each identified species, determined by sequences of act, cmdA, his3, rpb2, tef1 and tub2 regions; ‘-’ means not available. e act = actin; cmdA = calmodulin; his3 = histone H3; rpb2 = the second largest subunit of RNA polymerase; tef1 = translation elongation factor 1-alpha; tub2 = β-tubulin. f N/A represents sequences that are not available. g Isolates used in morphological and culture growth studies. h Isolates used for mating studies. i Isolates that represent ex-type cultures are indicated in bold.
Table 4. Statistics resulting from phylogenetic analyses in this study.
Table 4. Statistics resulting from phylogenetic analyses in this study.
DatasetNo. of TaxaNo. of bp aMaximum Parsimony
PIC bNo. of TreesTree LengthCI cRI dRC eHI f
act14727811142580.6360.9680.6150.364
cmdA1476722914336770.6470.9680.6260.353
his314346418310008300.4750.9280.4400.525
rpb213486326910006830.5300.9590.5080.470
tef114953226710007580.6370.9630.6130.363
tub213559728610008260.6090.9580.5840.391
act/cmdA/his3/rpb2/tef1/tub214934061407300044080.5320.9490.5040.468
DatasetMaximum Likelihood
Subst. Mode gNST hRate MatrixRates
actTPM2 + G60.5990 4.0516 0.5990 1.0000 4.0516 Gamma
cmdATrN + G61.0000 4.1556 1.0000 1.0000 7.1231 Gamma
his3TPM2uf + I + G61.2442 6.0957 1.2442 1.0000 6.0957 Gamma
rpb2TrNef + I + G61.0000 9.0443 1.0000 1.0000 13.4319 Gamma
tef1GTR + G60.9651 1.7160 1.1302 0.5271 3.1484 Gamma
tub2TPM3uf + I + G61.4044 4.4908 1.0000 1.4044 4.4908 Gamma
act/cmdA/his3/rpb2/tef1/tub2GTR + I + G61.4593 4.5939 1.1370 0.9972 6.3874 Gamma
a bp = Base pairs. b PIC = Number of parsimony informative characters. c CI = Consistency index. d RI = Retention index. e RC = Rescaled consistency index. f HI = Homoplasy index. g Subst. model = best fit substitution model. h NST = Number of substitution rate categories.
Table 5. Morphological comparisons of Calonectria species obtained in this study and other phylogenetically closely related species.
Table 5. Morphological comparisons of Calonectria species obtained in this study and other phylogenetically closely related species.
SpeciesReferences or
Source of Data
Ascospores
(L × W) a,b,c
Ascospores
Average
(L × W) a,b
Ascospores
Septation
Macroconidia
(L × W) a,b,c
Macroconidia Average
(L × W) a,b
Macroconidia
Septation
Vesicle
(Min.–Max.) a
Calonectria minensisthis study(38.5–)46.5–64.5(–80.5) × (6–)6.5–8(–8.5)55.5 × 73(51–)55–66(–79) × (4.5–)5–6(–7.5)60.5 × 5.5(1–)33–5
Ca. aciculata[4]N/A dN/AN/A(53–)62–76(–86) × (4.5–)5–6(–7)669 × 5.53(2–)2.5–3.5(–5)
Ca. colhounii[17](30–)50–65(–75) × (4–)5–6(–8)55 × 6(1–)3(45–)60–70(–80) × (4–)5–(–6)65 × 5(1–)33–4
Ca. eucalypti[37](25–)30–36(–56) × (3–)5–6(–8)33 × 6(1–)3(66–)69–75(–80) × (5–)672 × 634–6
Ca. honghensis[4](35–)43–55(–65) × (4.5–)5.5–6.5(–7.5)49 × 63(43–)49–59(–66) × (4.5–)5–5.5(–6)54 × 5.53(2.5–)3–4.5(–5.5)
a All measurements are in µm. b L × W = length × width. c Measurements are presented in the format [(minimum–) (average–standard deviation)–(average + standard deviation) (–maximum)]. d N/A represents data that is not available.
Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Share and Cite

MDPI and ACS Style

Liu, Q.; Wingfield, M.J.; Duong, T.A.; Wingfield, B.D.; Chen, S. Diversity and Distribution of Calonectria Species from Plantation and Forest Soils in Fujian Province, China. J. Fungi 2022, 8, 811. https://doi.org/10.3390/jof8080811

AMA Style

Liu Q, Wingfield MJ, Duong TA, Wingfield BD, Chen S. Diversity and Distribution of Calonectria Species from Plantation and Forest Soils in Fujian Province, China. Journal of Fungi. 2022; 8(8):811. https://doi.org/10.3390/jof8080811

Chicago/Turabian Style

Liu, Qianli, Michael J. Wingfield, Tuan A. Duong, Brenda D. Wingfield, and Shuaifei Chen. 2022. "Diversity and Distribution of Calonectria Species from Plantation and Forest Soils in Fujian Province, China" Journal of Fungi 8, no. 8: 811. https://doi.org/10.3390/jof8080811

Note that from the first issue of 2016, this journal uses article numbers instead of page numbers. See further details here.

Article Metrics

Back to TopTop