A Few Experimental Suggestions Using Minerals to Obtain Peptides with a High Concentration of L-Amino Acids and Protein Amino Acids
Abstract
:1. General Comments
2. Amino Acids
3. Biomolecules/Biomolecule Precursors and Adsorption on Minerals
4. Minerals
5. A Few Suggestions for Experiments
5.1. Environments for Adsorption and Polymerization of Amino Acids
5.2. Suggested Minerals for the Adsorption and Polymerization of Amino Acids
5.3. Suggested Amino Acids for the Adsorption and Polymerization
5.4. Experiment
5.4.1. General Comments
5.4.2. Hydrothermal Experiments
Suggestions for Experimental Procedures
5.4.3. Wet/Dry Cycle Experiments
Suggestions for Experimental Procedures
6. What Should We Expect from These Experiments?
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Adsorption | ||
Mineral | Experiment | Reference |
akaganéite | Amino acids dissolved in water pH between 3.0 and 7.6 (Gly, Ala, Ser, His Phe) | Holm et al. [72] |
apatite | Amino acids dissolved in water or aqueous solution of Ca2+ or PO43− (Ala, Asp, Lys) | Tanaka et al. [73] |
bentonite/kaolinite | Amino acids dissolved in artificial seawater were tumbled for 24 h, at pH 3.0, 6.0 and 8.0. (Ala, Met, Gln, Cys, Lys, His) | Benetoli et al. [74] |
ferrihydrite | Aqueous solution of amino acids, at room temperature, pH 5–6, samples turned (35 rpm) for 24 h or 1 week (Gly, Ala, β-Ala, Aib, -aminobutyric acid, isovaline) | Matrajt and Blanot, [75] |
goethite | Amino acids dissolved in salt solutions (Gly, Ala, β-Ala) | Farias et al. [76] |
goethite | Amino acids dissolved in 0.01 and 0.1 mol L-1 of NaCl (sarcosine, H2MIDDA, H2EDDA) | Norén et al. [77] |
hematite | Amino acid dissolved in water (Ala) | Pandey et al. [78] |
Kaolinite/hectorite | Aqueous solutions (Ala) | Silva et al. [79] |
magnetite | Aqueous solution of amino acids, at room temperature, pH 6, shaking for 24 h (Gly, Ala, Cys, Glu, His, Lys, Ser) | Schwaminger et al. [80] |
montmorillonite | Amino acids dissolved in artificial seawater were tumbled for 24 h, at pH 3.0, 6.0 and 8.0. (Gly, Ala, β-Ala) | Farias et al. [81] |
montomorillonite | Amino acid dissolved in water at pH from 2.0 to 11.0 (Gly) | Ramos and Huertas, [82] |
montmorillonite | Amino acid dissolved in distille water, pH ranges 3.5–5.5 and 6.8–9.2 (Gly, Ala) | Kalra et al. [83] |
montmorillonite/beidellite | Clays were modified with Na, Ca and Cu and amino acid was adsorbed and desorbed (Gly) | Benincasa et al. [84] |
montmorillonite/kaolinite | Amino acids dissolved in water were mixed for 2, 4, 24 and 48 h, at pH 6.0, 6.9 and 8.4 (Gly, Ala, Asp, Glu, Thr, Ser, Val, Met, Ile, Leu, Tyr, Phe, His, Lys, Arg). | Hedges and Hare, [85] |
montmorillonite/illite | Aqueous solutions of amino acids (Gly, Ala, β-Ala, Leu, Ser, Asp, Glu, Phe, Arg, His, Lys) | Greenland et al. [86,87] |
pyrite | Adsorption study using atomic force microscope (Gly, di-Gly, tri-Gly, penta-Gly, Lys, poly-Lys, Glu, poly-Glu) | Afrin et al. [88] |
pyrite | Amino acids were dissolved in 5.0 mmol L-1 of NaCl with and without Fe2+ (Gly, Ala, Ser, Cys) | Bebié and Schoonen, [89] |
sand (sea) | Aqueous solutions of amino acid tumbled for 24 h at room temperature (Ala, Glu, Tyr, Lys) | Zaia et al. [90] |
silica/alumina | Adsorption study using RMN (Gly) | Lopes et al. [91] |
zeolite | Aqueous or saline solutions of amino acids (Phe, Arg) | Krohn and Tsapatis, [92] |
Polymerization | ||
Mineral | Experiment | Reference |
apatite | Aqueous solution in the presence of CDI (Glu, cGlu) | Hill Jr. and Orgel, [93] |
Bentonite/pyrite/ aragonite/sphalerite/ calcite/zeolite | Aqueous solutions heated at 170 °C, for 30, 90 and 240 min, at pH 7.0 (Ala) | Kuwamura et al. [94] |
ferrihydrite | Aqueous solution or dry mixture heated at 95 °C for 24 h or 1 week (Gly, Ala) | Matrajt and Blanot, [75] |
Goethite/akaganéite/hematite/zinc oxide/titanium dioxide | Dry mixture of minerals and amino acids heated at 50, 90 or 120 °C, from 1 to 35 days (Gly, Ala). | Shanker et al. [95] |
Kaolinite/hectorite | Heating of dry mixtures of amino acid and mineral at 160 °C, 270 °C, 280 °C. (Ala) | Silva et al. [79] |
Kaolinite/zeolites | Aqueous solution heated (100–150 °C) for 9 to 85 h (Gly) | Zamaraev et al. [96] |
kaolinite | Wet/dry microwave cycles (Gly, Val, Leu, Ser, Met, Phe, tri-Gly, hexa-Gly) | Yanagawa et al. [97] |
Kaolinite/silica/aluminum hydroxide | Heating of dry mixtures of amino acid and mineral at 145 °C (Gly) | White et al. [98] |
maghemite/hematite/akaganéite | Amino acid was pre adsorbed on iron oxides, the material was dried and after heated (Gly) | Georgelin et al. [99] |
montmorillonite | Heating of dry mixtures (Gly, Arg) | Bu et al. [100] |
montmorillonite | Wet/dry cycles (Arg, Glu) | Jaber et al. [101] |
montmorillonite | Wet/dry cycles (Gly) | Bujdák et al. [102] |
Wet/dry cycles (Gly, Ala) | Bujdák et al. [103] | |
Montmorillonite/hectorite/ silica/alumina | Wet/dry cycles (Ala, Ala + Gly, Ala + Gly2, Ala + cyc-Gly2) | Bujdák and Rode, [104] |
Montmorillonite/kaolinite | Dry samples with Zn2+, Mg2+, ATP plus amino acid (Gly) | Rishpon et al. [105] |
Olivine plus orthpyroxene | Amino acids heated at 30–100 °C for 147 days at 200 bar (Gly, Ala, Glu, Val, Ser, Asp) | Takahagi et al. [106] |
sand (sea) | Dry samples of amino acids heated at 175 °C, for 1.5 h (several mixtures of amino acids mainly Gly) | Rohlfing and McAhaney, [107] |
silica | Adsorption of amino acids onto silica and heating the solid at 160 °C, 30 min. (Leu, Glu) | Bedoin et al. [108] |
Silica | Amino acid was pre adsorbed on silica, the material was dried and after heated (Glu, Leu, Asp, Val) | Sakhano et al. [109] |
silica | Amino acid was pre adsorbed on silica, the material was dried and after heated (Gly) | Meng et al. [110] |
Chiral Selection | ||
Mineral | Experiment | Reference |
allophane | Selective adsorption (Ala, Ala-Ala) | Hashizume et al. [111] |
apatite | Polymerization of NCA-amino acids (Glu) and adsorption of the polymers | Hitz and Luisi, [112] |
bentonite | Selective adsorption (Leu, Asp) | Bondy and Harrington, [113] |
calcite | Molecular simulation of adsorption (Ala) | Asthagiri and Hazen, [114] |
calcite | Selective adsorption (Asp) | Hazen et al. [115] |
kaolinite | High rate of polymerization of L-amino acids (Asp, Ser) | Jackson, [116] |
montmorillonite | Selective adsorption and deamination (Asp, Glu) | Siffert and Naidja, [117] |
quartz | Molecular simulation of adsorption (Ala) | Pauzat et al. [118] |
quartz | Polymerization of NCA-amino acids (Trp, Leu, Ile) and adsorption of the polymers | Hitz and Luisi, [112,119] |
quartz | Adsorption of amino acids on L- and D-quartz (L-, D-Ala) | Bonner et al. [120] |
vermiculite (modified) | Selective adsorption (Ala, Lys, His) | Fraser et al. [121,122] |
Name | Composition of Seawater (g L−1) |
---|---|
♦ hydrothermal seawater | * NaCl (37.05 g), KBr (0.310 g), ** KI (0.010 g), ** NH4Cl (0.610 g), ** SrCl2 6H2O (0.040 g), CaCl2 2H2O (6.26 g), KOH (1.07 g), NaOH (0.200 g), |
♦ seawater | * CaCl2 2H2O (34.12 g), MgCl2. 6H2O (10.35 g), KBr (0.268 g), NaCl (19.90 g), ** KI (0.006 g), ** NH4Cl (0.273 g), ** SrCl2 6H2O (1.205 g), Na2SO4 (0.333 g) |
♦♦ prebiotic seawater | * Na2SO4 (0.271 g), MgCl2.6H2O (0.500 g), CaCl2 2H2O (2.50 g), KBr (0.050 g), K2SO4 (0.400 g), MgSO4 (15.00 g) |
♦♦♦ seawater | NaCl (27.18 g), MgCl2. 6H2O (50.81 g), MgSO4 (14.45g), K2SO4 (1.01 g), Na2CO3 (0.127 g), |
♥ ancient calcite seawater | NaCl (32.73 g), MgCl2. 6H2O (9.15 g), CaCl2 2H2O (8.08 g), Si (2.2 mmol L−1) |
♥ ancient aragonite seawater | NaCl (32.73 g), MgCl2. 6H2O (2.03 g), CaCl2 2H2O (3.53 g), Si (2.2 mmol L−1) |
♥♥ seawater | NaCl (29.23 g), MgCl2. 6H2O (10.16 g) |
♥♥♥ seawater | CaCl2 2H2O (29.40 g), MgCl2. 6H2O (0.95 g), KCl (1.49 g), NaCl (1.17 g) |
Name | pHPZC | Surface Area (m2 g−1) | References |
---|---|---|---|
ferrihydrite | 6.4–8.5 | 200–400 | Zaia et al. [146]; Cornell and Schwertmann [147] |
magnetite | 6.2–7.8 | 4–100 | Samulewski et al. [66]; Schwaminger et al. [80]; Kosmulski [148]; Cornell and Schwertmann [147] |
montmorillonite | 1.8–3.0 | 38–500 | Theng [71]; Macht et al. [149]; Wang and Lee [150]; Hedges and Hare [85]; Greenland et al. [86] |
zeolite | negative | 360–700 | Carneiro et al. [151]; Lambert [5]; Krohn and Tsapatis [92] |
Amino Acids Produced in Environments Simulating Those of Earth | ||||
* Amino Acid | pKa of -COOH Group | pKb -NH3 Group | pKx R-Group | pI |
Glycine [1.00] | 2.31 | 9.24 | - | 5.77 |
Alanine [0.300–2.00] | 2.47 | 9.48 | - | 5.98 |
β-Alanine [0.050–0.300] | 4.08 | 10.31 | 6.95 | |
Isoleucine [0.050–0.300] | 2.79 | 9.59 | - | 6.19 |
Valine [0.050–0.300] | 2.72 | 9.60 | - | 6.16 |
Serine [0.020–0.150] | 2.03 | 8.93 | 15.17 | 5.70 |
Glutamic acid [0.020–0.150] | 1.88 | 9.54 | 4.27 | 2.70 |
Proline [0.020–0.150] | 1.94 | 11.33 | - | 7.12 |
Aspartic acid [0.020–0.150] | 1.70 | 9.61 | 5.11 | 3.41 |
α-Amino-n-butyric acid [0.020–0.150] | 2.62 | 9.53 | - | 6.08 |
Leucine [0.010–0.050] | 2.79 | 9.52 | - | 6.15 |
Phenylalanine [0.010–0.050] | 2.47 | 9.45 | - | 5.96 |
Threonine [0.010–0.050] | 2.21 | 9.00 | - | 5.60 |
Cysteine [0.010–0.050] | 2.35 | 9.05 | 10.17 | 5.68 |
Methionine [0.010–0.050] | 2.53 | 9.50 | - | 6.02 |
Arginine [0.010–0.050] | 2.41 | 9.12 | 12.41 | 10.77 |
Lysine [0.010–0.050] | 2.74 | 9.44 | 10.29 | 9.82 |
Histidine [0.010–0.050] | 1.85 | 9.44 | 6.61 | 8.02 |
γ-Amino-n-butyric acid [0.010–0.050] | 4.53 | 10.22 | -- | 7.09 |
Amino Acids Produced in Environments Simulating ISM or Found in Meteorites | ||||
** Amino Acid | pKa of -COOH Group | pKb -NH3 Group | pKx R-Group | pI |
Glycine [1.00] | 2.31 | 9.24 | - | 5.77 |
Aminoisobutyric acid [0.500–3.00] | 2.58 | 9.72 | - | 6.15 |
β-Alanine [0.500–1.500] | 4.08 | 10.31 | 6.95 | |
γ-Amino-n-butyric acid [0.500–1.500] | 4.53 | 10.22 | - | 7.09 |
Alanine [0.500–1.500] | 2.47 | 9.48 | - | 5.98 |
Glutamic acid [0.500–1.000] | 1.88 | 9.54 | 4.27 | 2.70 |
Serine [0.500–1.000] | 2.03 | 8.93 | 15.17 | 5.70 |
Isovaline [0.500–1.000] | 2.68 | 9.78 | - | 6.23 |
Aspartic acid [0.200–0.800] | 1.70 | 9.61 | 5.11 | 3.41 |
β-Amino-n-butyric acid [0.200–0.800] | 4.22 | 10.53 | - | 7.22 |
α-Amino-n-butyric acid [0.100–0.300] | 2.62 | 9.53 | - | 6.08 |
Valine [0.100–0.300] | 2.72 | 9.60 | -- | 6.16 |
GADV | GADV Plus Amino Acids | |||
---|---|---|---|---|
Endogenous Sources | Exogeneous Sources | Endogenous Sources | Exogeneous Sources | |
Amino acid proportion | Gly [1.00]/Ala [2.00]/Val [0.300]/Asp [0.150] | Gly [1.00]/Ala [1.50]/Val [0.300]/Asp [0.800] | Gly [1.00]/Ala [2.00]/β-Ala [0.300]/Val [0.300]/Asp [0.150]/α-ABA [0.150]/Phe [0.050]/Lys [0.050]/γ-ABA [0.050] | Gly [1.00]/AIB [3.00]/γ-ABA [1.50]/β-Ala [1.50]/Ala [1.50]/IsoVal [1.00]/Asp [0.800]/β-ABA [0.800]/Val [0.300]/α-ABA [0.300] |
Seawater composition | ||||
Seawater (Zaia, [67]) | Samulewski et al. [66] | |||
Na2SO4 (0.271 g), MgCl2.6H2O (0.500 g), CaCl2 2H2O (2.50 g), KBr (0.050 g), K2SO4 (0.400 g), MgSO4 (15.00 g) | CaCl2 2H2O (29.40 g), MgCl2. 6H2O (0.95 g), KCl (1.49 g), NaCl (1.17 g) | |||
Hydrothermal conditions | ||||
The amino acids could be dissolved in distilled water and artificial seawater. The following minerals could be: montmorillonite, magnetite, ferrihydrite, and zeolite Temperature100–150 °C, pH 6.00–7.00, and heating time 24 h. | ||||
Wet/dry cycles conditions | ||||
The amino acids could be dissolved in distilled water and artificial seawater. The following minerals could be: montmorillonite, magnetite, ferrihydrite, and zeolite. Wet phase temperature 60 °C and pH 6.00–7.00, dry phase temperature 100–150 °C for 24 h | ||||
Wet/dry cycles conditions (using deliquesce of the salts) | ||||
The amino acids could be mixed with the salts of artificial seawater [67] and seawater [128]. Wet phase temperature 60 °C for 4 h, dry phase temperature 100–150 °C for 20 h |
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Zaia, D.A.M.; Zaia, C.T.B.V. A Few Experimental Suggestions Using Minerals to Obtain Peptides with a High Concentration of L-Amino Acids and Protein Amino Acids. Symmetry 2020, 12, 2046. https://doi.org/10.3390/sym12122046
Zaia DAM, Zaia CTBV. A Few Experimental Suggestions Using Minerals to Obtain Peptides with a High Concentration of L-Amino Acids and Protein Amino Acids. Symmetry. 2020; 12(12):2046. https://doi.org/10.3390/sym12122046
Chicago/Turabian StyleZaia, Dimas A. M., and Cássia Thaïs B. V. Zaia. 2020. "A Few Experimental Suggestions Using Minerals to Obtain Peptides with a High Concentration of L-Amino Acids and Protein Amino Acids" Symmetry 12, no. 12: 2046. https://doi.org/10.3390/sym12122046