Site Selectivity of Halogen Oxygen Bonding in 5- and 6-Haloderivatives of Uracil
Abstract
:1. Introduction
2. Materials and Methods
2.1. Crystal Preparation
2.2. Single Crystal Structure Analysis
3. Results and Discussion
3.1. Structural Analysis of 5-Halouracils (1–4)
3.2. Structural Analysis of 6-Halouracils (5–7)
3.3. Hirshfeld Surface Analysis
3.3.1. Hirshfeld Surface Analysis of 5-Halouracils (1–4)
3.3.2. Hirshfeld Surface Analysis of 6-Halouracils (5–7)
4. Conclusions
Supplementary Materials
Funding
Conflicts of Interest
References
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Crystal | 1, 5Clura | 2, 5Brura | 3, 5Cl5Brura | 4, 5Br1Mura | 5, 6Clura | 6, 6Iura | 7, 6Cl6Mura |
---|---|---|---|---|---|---|---|
Crystal data | |||||||
Chemical formula | C4H3ClN2O2 | C4H3BrN2O2 | C8H6BrClN4O4 | C5H5BrN2O2 | C4H3ClN2O2 | C4H3IN2O2 | C4.42H4.26Cl0.58N2O2 |
Mr | 146.53 | 191.0 | 337.52 | 205.02 | 146.53 | 237.98 | 137.91 |
Crystal system Space group | Monoclinic P21/m | Monoclinic P21/m | Monoclinic P21/m | Monoclinic P21/c | Monoclinic P21/c | Monoclinic P21/c | Monoclinic P21/c |
a (Å) b (Å) c (Å) | 5.5150 (12) 6.8639 (18) 7.126 (2) | 5.7154 (8) 6.8825 (12) 7.1928 (11) | 5.6270 (6) 6.8631 (9) 7.1582 (9) | 7.1787 (11) 12.3056 (10) 7.7021 (12) | 4.7850 (8) 10.2750 (12) 11.6185 (13) | 5.0339 (5) 10.920 (1) 11.6673 (13) | 4.7297 (8) 10.4449 (17) 11.6798 (18) |
β (°) | 96.92 (2) | 97.380 (14) | 97.292 (11) | 91.275 (15) | 96.858 (12) | 99.034 (10) | 97.612 (14) |
V (Å3) | 267.78 (12) | 280.60 (8) | 274.20 (6) | 680.22 (16) | 567.15 (13) | 633.40 (11) | 571.91 (16) |
Z | 2 | 2 | 1 | 4 | 4 | 4 | 4 |
(mm−1) | 0.62 | 7.24 | 4.01 | 5.98 | 0.59 | 4.98 | 0.38 |
Crystal size (mm) | 0.12 × 0.11 × 0.08 | 0.11 × 0.09 × 0.08 | 0.12 × 0.09 × 0.08 | 0.15 × 0.12 × 0.10 | 0.12 × 0.09 × 0.07 | 0.10 × 0.08 × 0.07 | 0.11 × 0.09 × 0.07 |
Data collection | |||||||
Tmin, Tmax | 0.816, 1.000 | 0.465, 1.000 | 0.351, 1.000 | 0.227, 1.000 | 0.533, 1.000 | 0.595, 1.000 | 0.605, 1.000 |
No. of measured, independent, observed [I > 2σ (I)] reflections | 5270 844 694 | 5619 959 797 | 5922 937 800 | 13317 1978 1510 | 11,349 1725 966 | 12,467 1936 1585 | 8017 1302 1025 |
Rint | 0.037 | 0.039 | 0.077 | 0.044 | 0.105 | 0.046 | 0.046 |
(sin θ/λ)max (Å−1) | 0.704 | 0.725 | 0.725 | 0.703 | 0.714 | 0.714 | 0.650 |
Refinement | |||||||
R[F2 > 2σ (F2)] wR(F2) S | 0.035 0.095 1.05 | 0.029 0.072 1.09 | 0.032 0.081 1.10 | 0.039 0.095 1.06 | 0.055 0.154 1.05 | 0.028 0.061 1.09 | 0.047 0.115 1.10 |
No. of parameters | 55 | 59 | 65 | 96 | 90 | 84 | 101 |
Δρmax, Δρmin (e Å−3) | 0.34, −0.22 | 0.47, −0.67 | 0.37, −0.31 | 0.52, −0.56 | 0.26, −0.35 | 0.56, −0.49 | 0.17, −0.17 |
Compound | D-H···A | D-H (Å) | H···A (Å) | D···A (Å) | D-H···A (°) |
---|---|---|---|---|---|
1, 5Clura | N3-H3···O1i | 0.92 | 1.90 | 2.813 (2) | 172 |
2, 5Brura | N3-H3···O1i | 0.87 | 1.95 | 2.819 (2) | 175 |
3, 5Cl5Brura | N3-H3···O1i | 0.82 | 2.00 | 2.816 (2) | 175 |
4, 5Br1Mura | N3-H3···O2ii | 0.80 | 2.04 | 2.839 (3) | 176 |
Compound | D-H···A | D-H (Å) | H···A (Å) | D···A (Å) | D-H···A (°) |
---|---|---|---|---|---|
5, 6Clura | N1-H1···O2i | 0.87 | 1.96 | 2.818 (3) | 171 |
N3-H3···O2ii | 0.88 | 1.96 | 2.841 (3) | 178 | |
6, 6Iura | N1-H1···O2i | 0.87 | 1.99 | 2.852 (4) | 169 |
N3-H3···O2ii | 0.87 | 2.01 | 2.873 (4) | 175 | |
7, 6Cl6Mura | N1-H1···O2i | 0.92 | 1.91 | 2.829 (2) | 175 |
N3-H3···O2ii | 0.91 | 1.94 | 2.843 (3) | 176 |
Parameter | 5, 6Clura | 6, 6Iura | 7, 6Cl6Mura | |
---|---|---|---|---|
Cl-C6 | 1.709 (3) | --- | --- | 1.738 (6) 1 |
I1-C6 | --- | 2.076 (3) | --- | 2.097 (6) 2 |
Cl-C6 | --- | --- | 1.715 (4) | 1.738 (6) 1 |
C5-C6 | 1.340 (4) | 1.338 (4) | 1.334 (3) | 1.337 (1) 3 |
C4-C5 | 1.428 (4) | 1.431 (4) | 1.425 (3) | 1.431 (1) 3 |
C4-O2 | 1.248 (3) | 1.236 (4) | 1.244 (3) | 1.232 (1) 3 |
C2-N1 | 1.376 (4) | 1.373 (4) | 1.368 (3) | 1.381 (1) 3 |
C6-N1 | 1.356 (3) | 1.354 (4) | 1.362 (3) | 1.375 (1) 3 |
C2-O1 | 1.227 (3) | 1.224 (4) | 1.218 (3) | 1.219 (1) 3 |
C5-C4-N3 | 116.2 (3) | 115.6 (3) | 116.1 (2) | 114.6 (1) 3 |
Contact (%) | 2, 5Brura | 3, 5Cl5Brura |
---|---|---|
O⋯H/H⋯O | 23.6 | 23.9 |
O⋯O | 10.4 | 12.1 |
O⋯C/C⋯O | 8.6 | 7.5 |
Cl⋯O/O⋯Cl | --- | 5.7 |
Br⋯O/O⋯Br | 11.3 | 5.8 |
Cl⋯H/H⋯Cl | --- | 1.5 |
Br⋯H/H⋯Br | 11.3 | 9.8 |
C⋯H/H⋯C | 8.5 | 9.8 |
Cl⋯N/N⋯Cl | --- | 4.3 |
Br⋯N/N⋯Br | 5.4 | 1.1 |
H⋯H | 7.4 | 4.9 |
Cl⋯C/C⋯Cl | --- | 3.4 |
Br⋯C/C⋯Br | 3.9 | 0.5 |
Cl⋯Cl | --- | 0.7 |
Br⋯Br | 3.9 | 0.1 |
N⋯H/H⋯N | 0.9 | 1.2 |
Contact (%) | 5, 6Clura | 7, 6Cl6Mura |
---|---|---|
O⋯H/H⋯O | 37.4 | 36.8 |
Cl⋯C/C⋯Cl | 10.8 | 8.6 |
Cl⋯O/O⋯Cl | 9.4 | 8.3 |
H⋯H | 9.8 | 9.6 |
Cl⋯H/H⋯Cl | 6.9 | 3.1 |
O⋯C/C⋯O | 5.8 | 7.9 |
C⋯H/H⋯C | 4.9 | 8.8 |
Cl⋯N/N⋯Cl | 3.7 | 3.5 |
Cl⋯Cl | 3.3 | 0.9 |
N⋯O/O⋯N | 4.3 | 4.3 |
N⋯H/H⋯N | 1.5 | 1.5 |
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Portalone, G. Site Selectivity of Halogen Oxygen Bonding in 5- and 6-Haloderivatives of Uracil. Crystals 2019, 9, 467. https://doi.org/10.3390/cryst9090467
Portalone G. Site Selectivity of Halogen Oxygen Bonding in 5- and 6-Haloderivatives of Uracil. Crystals. 2019; 9(9):467. https://doi.org/10.3390/cryst9090467
Chicago/Turabian StylePortalone, Gustavo. 2019. "Site Selectivity of Halogen Oxygen Bonding in 5- and 6-Haloderivatives of Uracil" Crystals 9, no. 9: 467. https://doi.org/10.3390/cryst9090467