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Review

RNAseq and Proteomics for Analysing Complex Oomycete Plant Interactions

by
Dharani D. Burra
,
Ramesh R. Vetukuri
,
Svante Resjö
,
Laura J. Grenville-Briggs
and
Erik Andreasson
*
Resistance Biology, Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Uppsala, Sweden
*
Author to whom correspondence should be addressed.
Curr. Issues Mol. Biol. 2016, 19(1), 73-88; https://doi.org/10.21775/9781910190357.08
Submission received: 14 June 2015 / Revised: 15 August 2015 / Accepted: 28 August 2015 / Published: 11 September 2015
Versions Notes

Abstract

The oomycetes include some of the most devastating plant pathogens. In this review we discuss the latest results from oomycete and plant studies with emphasis on interaction studies. We focus on the outcomes of RNAseq and proteomics studies and some pitfalls of these approaches. Both pathogenic interactions and biological control are discussed. We underline the usefulness of studies at several levels of complexity from studies of one organism, up to two or more and within agricultural fields (managed settings) up to wild ecosystems. Finally we identify areas of future interest such as detailed interactome studies, dual RNAseq studies, peptide modification studies and population/meta omics with or without biological control agents.
Keywords: oomycetes; plant pathogens; interaction studies; RNAseq; proteomics oomycetes; plant pathogens; interaction studies; RNAseq; proteomics

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MDPI and ACS Style

Burra, D.D.; Vetukuri, R.R.; Resjö, S.; Grenville-Briggs, L.J.; Andreasson, E. RNAseq and Proteomics for Analysing Complex Oomycete Plant Interactions. Curr. Issues Mol. Biol. 2016, 19, 73-88. https://doi.org/10.21775/9781910190357.08

AMA Style

Burra DD, Vetukuri RR, Resjö S, Grenville-Briggs LJ, Andreasson E. RNAseq and Proteomics for Analysing Complex Oomycete Plant Interactions. Current Issues in Molecular Biology. 2016; 19(1):73-88. https://doi.org/10.21775/9781910190357.08

Chicago/Turabian Style

Burra, Dharani D., Ramesh R. Vetukuri, Svante Resjö, Laura J. Grenville-Briggs, and Erik Andreasson. 2016. "RNAseq and Proteomics for Analysing Complex Oomycete Plant Interactions" Current Issues in Molecular Biology 19, no. 1: 73-88. https://doi.org/10.21775/9781910190357.08

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