Exploring the Contribution of the Transporter AGT1/rBAT in Cystinuria Progression: Insights from Mouse Models and a Retrospective Cohort Study
Abstract
:1. Introduction
2. Results
2.1. AGT1/rBAT Contribution to Cystinuria Progression in Mouse Models
2.2. SLC3A1, SLC7A9, and SLC7A13 Genetic Analysis in Cystinuria Patients
2.3. Functional Studies of SLC7A13 Missense Variants Identified in Cystinuria Patients
2.4. c.745G>A and c.988C>T SLC7A13 Variants Contribution to Amino Acid Excretion in Cystinuria Patients
3. Discussion
4. Materials and Methods
4.1. Mouse Proceedings
4.2. Brush-Border Western Blot
4.3. Patients
4.4. Patient Genotyping
4.5. DNA Constructions and Site-Directed Mutagenesis
4.6. Cell Culture and Transfection
4.7. Visualization of GFP-Tagged Amino Acid Transporters Using Fluorescence Microscopy
4.8. Amino Acid Transport Assay
4.9. Statistical Analysis
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Kum, F.; Wong, K.; Game, D.; Bultitude, M.; Thomas, K. Hypertension and Renal Impairment in Patients with Cystinuria: Findings from a Specialist Cystinuria Centre. Urolithiasis 2019, 47, 357–363. [Google Scholar] [CrossRef]
- Stein, W.H. Excretion of Amino Acids in Cystinuria. Proc. Soc. Exp. Biol. Med. 1951, 78, 705–708. [Google Scholar] [CrossRef]
- Königsberger, E.; Wang, Z.; Königsberger, L.-C. Solubility of L-Cystine in NaCl and Artifcial Urine Solutions. Chem. Mon. 2000, 131, 39–45. [Google Scholar] [CrossRef]
- Erbagci, A.; Ergbagci, A.; Yilmaz, M.; Yagci, F.; Tarakcloglu, M.; Yurtseven, C.; Koyluoglu, O.; Sarica, K. Pediatric Urolithiasis. Scand. J. Urol. Nephrol. 2003, 37, 129–133. [Google Scholar] [CrossRef]
- Leusmann, D.B.; Blaschke, R.; Schmandt, W. Results of 5035 Stone Analyses: A Contribution to Epidemiology of Urinary Stone Disease. Scand. J. Urol. Neprhol. 1990, 24, 205–210. [Google Scholar] [CrossRef] [PubMed]
- Thomas, K.; Wong, K.; Withington, J.; Bultitude, M.; Doherty, A. Cystinuria—A Urologist’s Perspective. Nat. Rev. Urol. 2014, 11, 270–277. [Google Scholar] [CrossRef] [PubMed]
- Prot-Bertoye, C.; Lebbah, S.; Daudon, M.; Tostivint, I.; Bataille, P.; Bridoux, F.; Brignon, P.; Choquenet, C.; Cochat, P.; Combe, C.; et al. CKD and Its Risk Factors among Patients with Cystinuria. Clin. J. Am. Soc. Nephrol. 2015, 10, 842–851. [Google Scholar] [CrossRef] [PubMed]
- Calonge, M.J.; Gasparini, P.; Chillaron, J.; Chillon, M.; Rousaud, G.F.; Zelante, L.; Testar, X.; Dallapiccola, B.; Di Silverio, F.; Barcel, P.; et al. RBAT, a Gene Involved in the Transport of Cystine. Nat. Genet. 1994, 6, 420–425. [Google Scholar] [CrossRef] [PubMed]
- Feliubadaló, L.; Font, M.; Purroy, J.; Rousaud, F.; Estivill, X.; Nunes, V.; Golomb, E.; Centola, M.; Aksentijevich, I.; Kreiss, Y.; et al. Non-Type I Cystinuria Caused by Mutations in SLC7A9, Encoding a Subunit (Bo,+AT) of RBAT. Nat. Genet. 1999, 23, 52–57. [Google Scholar] [CrossRef] [PubMed]
- Pfeiffer, R.; Loffing, J.; Rossier, G.; Bauch, C.; Meier, C.; Eggermann, T.; Loffing-Cueni, D.; Kü, L.C.; Verrey, F. Luminal Heterodimeric Amino Acid Transporter Defective in Cystinuria. Mol. Biol. Cell 1999, 10, 4135–4147. [Google Scholar] [CrossRef] [PubMed]
- Rhodes, H.L.; Yarram-Smith, L.; Rice, S.J.; Tabaksert, A.; Edwards, N.; Hartley, A.; Woodward, M.N.; Smithson, S.L.; Tomson, C.; Welsh, G.I.; et al. Clinical and Genetic Analysis of Patients with Cystinuria in the United Kingdom. Clin. J. Am. Soc. Nephrol. 2015, 10, 1235–1245. [Google Scholar] [CrossRef]
- Kim, J.H.; Park, E.; Hyun, H.S.; Lee, B.H.; Kim, G.H.; Lee, J.H.; Park, Y.S.; Kang, H.G.; Ha, I.S.; Cheong, H. Il Genotype and Phenotype Analysis in Pediatric Patients with Cystinuria. J. Korean Med. Sci. 2017, 32, 310–314. [Google Scholar] [CrossRef]
- Wong, K.A.; Mein, R.; Wass, M.; Flinter, F.; Pardy, C.; Bultitude, M.; Thomas, K. The Genetic Diversity of Cystinuria in a UK Population of Patients. BJU Int. 2015, 116, 109–116. [Google Scholar] [CrossRef] [PubMed]
- Dello Strologo, L.; Pras, E.; Pontesilli, C.; Beccia, E.; Ricci-Barbini, V.; De Sanctis, L.; Ponzone, A.; Gallucci, M.; Bisceglia, L.; Leopoldo, Z.; et al. Comparison between SLC3A1 and SLC7A9 Cystinuria Patients and Carriers: A Need for a New Classification. J. Am. Soc. Nephrol. 2002, 13, 2547–2553. [Google Scholar] [CrossRef] [PubMed]
- Olschok, K.; Vester, U.; Lahme, S.; Kurth, I.; Eggermann, T. No Evidence for Point Mutations in the Novel Renal Cystine Transporter AGT1/SLC7A13 Contributing to the Etiology of Cystinuria. BMC Neprhology 2018, 19, 278. [Google Scholar] [CrossRef] [PubMed]
- Di Giacopo, A.; Rubio-Aliaga, I.; Cantone, A.; Artunc, F.; Rexhepaj, R.; Frey-Wagner, I.; Font-Llitjós, M.; Gehring, N.; Stange, G.; Jaenecke, I.; et al. Differential Cystine and Dibasic Amino Acid Handling after Loss of Function of the Amino Acid Transporter b 0,+ AT (Slc7a9) in Mice. Am. J. Physiol. Physiol. 2013, 305, F1645–F1655. [Google Scholar] [CrossRef] [PubMed]
- Chillarón, J.; Roca, R.; Valencia, A; Zorzano, A.; Palacín, M.; Chillaron, J.; Roca, R.; Valencia, A; Zorzano, A.; Palacin, M. Heteromeric Amino Acid Transporters: Biochemistry, Genetics, and Physiology. Am. J. Physiol. Physiol. 2001, 281, F995–F1018. [Google Scholar] [CrossRef] [PubMed]
- Feliubadaló, L.; Arbonés, M.; Mañas, S.; Chillarón, J.; Visa, J.; Rodés, M.; Rousaud, F.; Zorzano, A.; Palacín, M.; Nunes, V. Slc7a9-Deficient Mice Develop Cystinuria Non-l and Cystine Urolithiasis. Hum. Mol. Genet. 2003, 12, 2097–2108. [Google Scholar] [CrossRef] [PubMed]
- Nagamori, S.; Wiriyasermkul, P.; Guarch, M.E.; Okuyama, H.; Nakagomi, S.; Tadagaki, K.; Nishinaka, Y.; Bodoy, S.; Takafuji, K.; Okuda, S.; et al. Novel Cystine Transporter in Renal Proximal Tubule Identified as a Missing Partner of Cystinuria-Related Plasma Membrane Protein RBAT/SLC3A. Proc. Natl. Acad. Sci. USA 2016, 113, 775–780. [Google Scholar] [CrossRef]
- Ioannidis, N.M.; Rothstein, J.H.; Pejaver, V.; Middha, S.; McDonnell, S.K.; Baheti, S.; Musolf, A.; Li, Q.; Holzinger, E.; Karyadi, D.; et al. REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants. Am. J. Hum. Genet. 2016, 99, 877–885. [Google Scholar] [CrossRef]
- Adzhubei, I.A.; Schmidt, S.; Peshkin, L.; Ramensky, V.E.; Gerasimova, A.; Bork, P.; Kondrashov, A.S.; Sunyaev, S.R. A Method and Server for Predicting Damaging Missense Mutations. Nat. Methods 2010, 7, 248–249. [Google Scholar] [CrossRef]
- Rodriguez, C.F.; Escudero-Bravo, P.; Dıaz, L.; Bartoccioni, P.; Garcıa-Martın, C.; Gilabert, J.G.; Boskovic, J.; Guallar, V.; Errasti-Murugarren, E.; Llorca, O.; et al. Structural Basis for Substrate Specificity of Heteromeric Transporters of Neutral Amino Acids. Proc. Natl. Acad. Sci. USA 2021, 118, e2113573118. [Google Scholar] [CrossRef] [PubMed]
- Bartoccioni, P.; Rius, M.; Zorzano, A.; Palacín, M.; Chillarón, J. Distinct Classes of Trafficking RBAT Mutants Cause the Type I Cystinuria Phenotype. Hum. Mol. Genet. 2008, 17, 1845–1854. [Google Scholar] [CrossRef]
- Shayakul, C.; Kanai, Y.; Lee, W.S.; Brown, D.; Rothstein, J.D.; Hediger, M.A. Localization of the High-Affinity Glutamate Transporter EAAC1 in Rat Kidney. Am. J. Physiol. 1997, 273, F1023–F1029. [Google Scholar] [CrossRef] [PubMed]
- Bailey, C.G.; Ryan, R.M.; Thoeng, A.D.; Ng, C.; King, K.; Vanslambrouck, J.M.; Auray-Blais, C.; Vandenberg, R.J.; Bröer, S.; Rasko, J.E.J. Loss-of-Function Mutations in the Glutamate Transporter SLC1A1 Cause Human Dicarboxylic Aminoaciduria. J. Clin. Investig. 2011, 121, 446–453. [Google Scholar] [CrossRef]
- Peghini, P.; Janzen, J.; Stoffel, W. Glutamate Transporter EAAC-1-Deficient Mice Develop Dicarboxylic Aminoaciduria and Behavioral Abnormalities but No Neurodegeneration Pietro. EMBO J. 1997, 16, 3822–3832. [Google Scholar] [CrossRef] [PubMed]
- Peters, T.; Thaete, C.; Wolf, S.; Popp, A.; Sedlmeier, R.; Grosse, J.; Nehls, M.C.; Russ, A.; Schlueter, V. A Mouse Model for Cystinuria Type I. Hum. Mol. Genet. 2003, 12, 2109–2120. [Google Scholar] [CrossRef]
- Casado, M.; Sierra, C.; Batllori, M.; Artuch, R.; Ormazabal, A. A Targeted Metabolomic Procedure for Amino Acid Analysis in Different Biological Specimens by Ultra-High-Performance Liquid Chromatography–Tandem Mass Spectrometry. Metabolomics 2018, 14, 76. [Google Scholar] [CrossRef]
- Biber, J.; Stieger, B.; Stange, G.; Murer, H. Isolation of Renal Proximal Tubular Brush-Border Membranes. Nat. Protoc. 2007, 2, 1356–1359. [Google Scholar] [CrossRef]
- Furriols, M.; Chillarón, J.; Mora, C.; Castelló, A.; Bertran, J.; Camps, M.; Testar, X.; Vilaró, S.; Zorzano, A.; Palacín, M. RBAT, Related to L-Cystine Transport, Is Localized to the Microvilli of Proximal Straight Tubules, and Its Expression Is Regulated in Kidney by Development. J. Biol. Chem. 1993, 268, 27060–27068. [Google Scholar] [CrossRef] [PubMed]
- Takahashi, T.; Somiya, S.; Ito, K.; Kanno, T.; Higashi, Y.; Yamada, H. The Long-Term Follow-up of Patients with Cystine Stones: A Single-Center Experience for 13 Years. J. Clin. Med. 2021, 10, 1336. [Google Scholar] [CrossRef] [PubMed]
- Alghamdi, M.; Alhasan, K.; Elawad, A.T.; Salim, S.; Abdelhakim, M.; Nashabat, M.; Raina, R.; Kari, J.; Alfadhel, M. Diversity of Phenotype and Genetic Etiology of 23 Cystinuria Saudi Patients: A Retrospective Study Malak. Front. Pediatr. 2020, 8, 569389. [Google Scholar] [CrossRef] [PubMed]
Two Mutations | One Mutation | No Mutations | |
---|---|---|---|
SLC3A1 | 15 (44%) | / | / |
SLC7A9 | 11 (32%) | 6 (18%) | / |
Both Genes | 1 (3%) | / | / |
Total | 27 (79%) | 6 (18%) | 1 (3%) |
SLC7A13 Variant (NM_138817.3) | AGT1 Change (NP_620172.2) | REVEL Prediction | Allele Frequency in the Non-Finnish European Population | Nº of Alleles Found in Our Cohort | Allele Frequency in Our Cohort | Zygosity in Our Cohort |
---|---|---|---|---|---|---|
c.745G>A | p.V249M | 0.291 (Uncertain) | 0.151 | 15 | 0.221 | 13 heterozygous1 homozygous |
c.988C>T | p.L330F | 0.355 (Uncertain) | 0.030 | 1 | 0.015 | 1 heterozygous |
c.1139G>A | p.R380K | 0.162 (Benign) | 0.128 | 11 | 0.162 | 11 heterozygous |
c.1355T>C | p.M452T | 0.156 (Benign) | 0.086 | 4 | 0.059 | 4 heterozygous |
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Mayayo-Vallverdú, C.; Prat, E.; Vecino-Pérez, M.; González, L.; Gràcia-Garcia, S.; San Miguel, L.; Lopera, N.; Arias, A.; Artuch, R.; López de Heredia, M.; et al. Exploring the Contribution of the Transporter AGT1/rBAT in Cystinuria Progression: Insights from Mouse Models and a Retrospective Cohort Study. Int. J. Mol. Sci. 2023, 24, 17140. https://doi.org/10.3390/ijms242417140
Mayayo-Vallverdú C, Prat E, Vecino-Pérez M, González L, Gràcia-Garcia S, San Miguel L, Lopera N, Arias A, Artuch R, López de Heredia M, et al. Exploring the Contribution of the Transporter AGT1/rBAT in Cystinuria Progression: Insights from Mouse Models and a Retrospective Cohort Study. International Journal of Molecular Sciences. 2023; 24(24):17140. https://doi.org/10.3390/ijms242417140
Chicago/Turabian StyleMayayo-Vallverdú, Clara, Esther Prat, Marta Vecino-Pérez, Laura González, Silvia Gràcia-Garcia, Luz San Miguel, Noelia Lopera, Angela Arias, Rafael Artuch, Miguel López de Heredia, and et al. 2023. "Exploring the Contribution of the Transporter AGT1/rBAT in Cystinuria Progression: Insights from Mouse Models and a Retrospective Cohort Study" International Journal of Molecular Sciences 24, no. 24: 17140. https://doi.org/10.3390/ijms242417140