Comparative Proteomic Analysis of Transcriptional and Regulatory Proteins Abundances in S. lividans and S. coelicolor Suggests a Link between Various Stresses and Antibiotic Production
Abstract
:1. Introduction
2. Results
2.1. Components of the Transcriptional Apparatus
2.2. Transcriptional Regulators and Sensory Histidine Kinases
2.2.1. Cluster A: Regulators More Abundant in Pi Proficiency than in Pi Limitation in Both Strains
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- The response regulator (RR) OsaB/SCO5749 of TCS OsaA (HK)/OsaB whose expression is induced in conditions of OsS in a sigma B-dependent manner [66]. An OsaB mutant cannot erect aerial hyphae and produces up to 5-fold more antibiotic than the wild-type strain [66]. This TCS, involved in osmoadaptation, thus plays a negative role in the regulation of antibiotic production suggesting that high OsS contributes to the triggering of antibiotic production.
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- The sensory histidine kinase (SHK) DraK/SCO3062 of the TCS DraK/DraR. DraR was shown to directly activate the transcription of pathway-specific activator actII-ORF4 and thus ACT biosynthesis [67] whereas it represses CPK and RED biosynthesis via the repression it exerts on the expression of KasO, the specific activator of the CPK pathway, but its effect on RED biosynthesis is independent of the pathway-specific activators RedD and RedZ [67].
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- The regulator DmdR1/SCO4394 controls iron homeostasis via the repression it exerts on the expression of the desABCDE/sco2782-85 cluster that directs the biosynthesis of the siderophore, desferrioxamine. Such repression is relieved in conditions of iron deprivation. Our previous data indicated that DesABCE were more abundant in SL than in SC, especially in Pi proficiency, whereas, unexpectedly, the siderophore biosynthetic enzyme DesD, was highly abundant in both Pi conditions in SC (Figure S12B of [9]).
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- The SOS regulatory protein LexA/SCO5803 that positively controls the expression of the recombination protein RecA/SCO5769 [68]. Consistently, LexA and RecA were more abundant in Pi proficiency than in Pi limitation in SL but RecA was similarly and highly abundant in both Pi conditions in SC (Figure S8 of [9]) indicating a situation of stress.
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- The gene encoding the regulator SCO1614 that is located in divergence of an ethanolamine utilization pathway [69].
2.2.2. Cluster B: Regulatory Proteins More Abundant in Pi Limitation than in Pi Proficiency in Both Strains
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- The SHK CseC/SCO3359 of the TCS cseC/cseB belongs to an operon constituted also by cseA (lipoprotein) and sigE. This TCS activates the transcription of sigE/sco3356, in response to the alteration of the cell envelope [47,75]. Consistently, SigE was far more abundant in SC than in SL in both Pi conditions (Figure 1). This indicated that damages to the cell wall occur independently of Pi availability in SC.
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- AbrC1/SCO4598 is part of an atypical TCS constituted of 2 SHK (AbrC1/SCO4598 and AbrC2/SCO4597) and of the RR AbrC3/SCO4596 [76]. The genes encoding this TCS are located in divergence of genes encoding sub-units of NADH dehydrogenase (SCO4599-SCO4608) which were far more abundant in SC than in SL in both Pi conditions (Figure 5 of [9]). This TCS has a positive impact on antibiotic production and morphological differentiation in SC [76,77,78].
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- The regulator BldB/SCO5723 that has a positive impact on antibiotic production and morphological differentiation [79].
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- Three proteins involved in the regulation of phosphate metabolism: the TCS PhoR/PhoP as well as the regulatory protein PhoU/SCO4228. In condition of Pi limitation, PhoR/PhoP positively controls the expression of genes of the Pho regulon involved in Pi scavenging and up-take [80] and negatively those involved in nitrogen assimilation [81]. This TCS also plays a negative role in the control of morphological differentiation and antibiotic production [82,83]. PhoU, through its interaction with PstB, the ATP-binding cassette of the high affinity ABC Pi transporter PstSCAB, was proposed to sense environmental Pi and to transmit this signal to the SHK PhoR, promoting or inhibiting its auto-phosphorylation in Pi limitation or proficiency, respectively [84,85]. The difference in the abundance of proteins involved in Pi scavenging and up-take, in conditions of in Pi limitation or proficiency, was much greater in SL than in SC (Figure 6 of [9]).
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- The adenylyltransferase GlnE/SCO2234 that modulates the activity of the glutamine synthase GSI through adenylylation, in response to N availability [86] and is thus involved in the regulation of nitrogen metabolism.
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- The LacI regulator SCO4158 [87] whose encoding gene is located downstream of glnR/sco4159 encoding a major regulator of N metabolism (cluster G). SCO4158 was abundant in both strains in Pi limitation whereas GlnR was far more abundant in Pi proficiency than in Pi limitation in SL but poorly abundant in SC in both Pi conditions. Considering the proximity of sco4158 and glnR and their opposite regulatory features, SCO4158 might regulate glnR expression.
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- The gene encoding the GntR regulator SCO1728 is located in divergence of a gene encoding a putative mycothiol synthase that might play a role in the resistance to OxS. In the condition of over-expression, SCO1728 was shown to have a negative impact on antibiotic production [91], which might be linked to its role in the resistance to OxS that was proposed to be an important trigger of ACT biosynthesis [8,12].
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- The MarR regulator SCO0487/CchL, whose encoding gene is present in the biosynthetic pathway of the peptide siderophore, coelichelin (sco0499/cchA—sco0489/cchK) [92]. The 11 proteins of the coelichelin cluster detected (Figure S12B of [9]) were, as SCO0487, all more abundant in Pi limitation than in Pi proficiency in SL, suggesting that SCO0487 positively regulates their expression in Pi limitation. Five of these proteins (SCO0493 to SCO0497) were also more abundant in Pi limitation than in Pi proficiency in SC whereas, unexpectedly, four others (SCO0492, SCO0498 to SCO0490) were more abundant in Pi proficiency than in Pi limitation in SC and two (SCO0499 and SCO0491) were poorly abundant in both Pi conditions in SC.
2.2.3. Cluster C: Regulators More Abundant in SC than in SL in Both Pi Conditions
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- Two regulatory systems able to sense nitric oxide (NO), the TCS OdsK/SCO0203-OdsR/SCO0204 [94] also called DevS/R [95], and NsrR/SCO7427 which positively controls the expression of NO-detoxifying flavohemoglobins hmpA1/SCO7428 and hpmA2/SCO7094 [96,97]. The RR OdsR regulates the expression of genes of the dormancy/survival regulon [94]. Proteins of the OdsR regulon fall into two groups, highly and poorly expressed in SC, and conversely in SL (Figure S11C of [9]). Intracellular NO is thought to inhibit the auto-phosphorylation of the SHK DevS/OdsK which becomes unable to phosphorylate the RR DevR/OdsR [95]. Un-phosphorylated OdsR is unable to interact with the promoter region of actII-ORF4 to activate its expression [95]. NO thus has an indirect negative effect on ACT biosynthesis. Since SC produces ACT abundantly, it might be legitimate to propose that little NO is generated in SC, and this would be consistent with the previously mentioned reduced N availability in this strain.
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- The regulator WblA that is a target of the OrrA was identified as a down-regulator of the expression of genes involved in the resistance to OxS [101]. Since OxS was proposed to be an important trigger of ACT biosynthesis [8,12], this can explain the negative impact that WblA exerts on ACT biosynthesis [102].
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- The regulator Rex SCO3320 [103] that responds to NAD+/NADH poise and represses the transcription of numerous genes, including its own and that of genes encoding subunits of the complex I/NADH dehydrogenase of the respiratory chain, (nuoABCDEFGHIJKLMN/sco4562-75) and of the ATP synthase (atpIBEFHAGDC/sco5366-74). The repressing effect of Rex is alleviated when the intracellular NADH concentration is high [103], as is likely to be the case in SC that is characterized by an oxidative metabolism [10]. Interestingly, the sub-units of the complex I of the respiratory chain were far more abundant in SC than in SL, in both Pi conditions (Figure 5 of [9]).
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2.2.4. Cluster D: Regulatory Proteins More Abundant in Pi Proficiency than in Pi Limitation in SC
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- The regulator DasR/SCO5231 which is known to repress the expression of genes involved in the up-take and catabolism of N-acetyl glucosamine [109]. Glucosamine-6-phosphate (GlcN-6P) and N-acetylglucosamine-6-phosphate (GlcNAc-6P) act as allosteric effectors of DasR impairing binding to operator sites and thus allowing the expression of the DasR-target genes. Since several enzymes involved in cell wall degradation were far more abundant in SC than in SL (Figure S10, cluster C of [9]), GlcN-6P as GlcNAc-6P are likely to result from the autolytic degradation of peptidoglycan that obviously takes place in SC but not in SL.
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- The RR MacR/SCO2120 of the TCS MarS/MarR positively controls the expression of several membrane proteins involved in maintenance of cell wall integrity of some proteins involved in primary carbon metabolism and of proteins of the Zur regulon which plays a role in zinc homeostasis [110,111]. Furthermore, MacR was shown to directly interact with the actII-orf4 promotor region and to have a positive impact on ACT, as well as CDA and RED biosynthesis [111].
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- The RR RapA1/SCO5403 of the TCS RapA2/RapA1, which has a positive impact on CPK and ACT biosynthesis [112].
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- The ScbR-like regulator SlbR/SCO0608 which, in interaction with γ-butyrolactone SCB1, binds to the promoter regions of scbR/A and adpA [115] and inhibits the transcription of these genes that positively control morphological development and antibiotic production [116]. SlbR thus has an indirect negative impact on antibiotic production and morphological differentiation [117].
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- The gene encoding the regulator SCO2152 is located in divergence of the qcrCAB operon (sco2148—sco2151), which plays an important role in growth and development of SC in conditions of oxygen limitation [120,121]. SCO2152 was rather more abundant in SC than in SL in both Pi conditions, whereas QcrA/SCO2149 showed an opposite trend (Figure 5 of [9] and Figure S1) suggesting that SCO2152 might negatively regulate the expression of the qcrCAB operon.
2.2.5. Cluster E: Regulatory Proteins More Abundant in Pi Limitation than in Pi proficiency in SC
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- The zinc-binding regulator HypR/SCO6294 [127], whose expression is induced by hydroxyproline. SCO6294 controls the expression of the Hyp operon (sco6289-sco6293) involved with L-hydroxyproline catabolism. Since hydroxyproline is known to enhance the activity of the peptidoglycan N-deacetylase [128], the induction of HypR expression in SC in Pi limitation might be related to cell wall alteration in SC.
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- The RR DraR/SCO3063 of the TCS DraK (sub-cluster A2)/DraR, which has a positive impact on ACT biosynthesis but a negative one on CPK and RED biosynthesis [62].
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- The ArsR-like regulator SCO6808, which has a negative impact on antibiotic biosynthesis [117]
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- The KorSA-like regulator SCO3932 is located upstream of a pSAM2-like ICE element and has a positive impact CPK and ACT synthesis via its direct interaction with cpkD, a coelimycin biosynthetic gene, and actII-orf4 [129].
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- The RR SCO5785 of the TCS SCO5784/SCO5785 has a positive impact on the production of several extracellular proteins and on antibiotics biosynthesis, and a negative one on the expression of some ribosomal genes [130].
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- The MmyB-like regulator SCO4944 is a putative member of the A-factor signaling cascade [131] and is likely to have a positive impact on antibiotic biosynthesis.
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2.2.6. Cluster F: Regulators More Abundant in SL than in SC in Both Pi Conditions
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- Zur/SCO2508 which, in interaction with Zinc [140], positively controls the expression of the gene encoding the zinc exporter ZitB/SCO6751 [141] and negatively that of the genes encoding an ABC transporter involved in Zn uptake (SCO2505/SCO2506/SCO2507) [141,142], and of a cluster of genes directing the biosynthesis of the zincophore, coelibactin [143]. Consistently, ZitB/SCO6751 was poorly abundant in SC and in SL, and to a lesser extent in Pi proficiency (Figure S19 of [9]), whereas proteins of the coelibactin cluster and SCO2506 were more abundant in Pi proficiency than in Pi limitation in SC as in SL, to a lesser extent (Figure 10 of [9]). This indicated that Zur is involved in the regulation of Zn homeostasis, maintaining a low intracellular Zn concentration. In S. avermitilis, the deletion of zur resulted in decreased production of antibiotics and delayed morphological differentiation [144], as did the addition of Zn in the growth medium of SC [145] indicating that Zur plays a positive role in the regulation of antibiotic biosynthesis.
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- SCO5464/CabB, a calmodulin-like protein that has a role in calcium homeostasis [149].
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- Scr1/SCO4441, which has a strong positive impact on endogenous antibiotic production of SC, SL, and other Streptomyces strains [156].
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- The regulator SCO1678, which negatively controls the expression of the divergent operon involved in gluconate metabolism [159].
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- BldH/SCO2792/AdpA, which activates the transcription of ramR, an atypical response regulator that itself activates expression of the genes of the ramCSAB operon required for aerial mycelium formation [162].
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- NsdB/SCO7252 [163] and NsdA/SCO5582 [164,165]. NsdA was more abundant in Pi proficiency than in Pi limitation in SL. nsdA is located just upstream of a cluster of genes targets of GlnR/SCO4159, an important regulator of N metabolism [166]: amtB/sco5583 (ammonium transporter), glnK/sco5584 (regulatory protein P-II, cluster I), and glnD/sco5585 (protein PII adenylyltransferase) [167]. These proteins were more abundant in Pi proficiency than in Pi limitation in SL as well as in SC but to a far lesser extent (Figure 7 of [9]). Considering the proximity of ndsA with this cluster of genes and its differential abundance in SL and SC, NdsA might play a role in the regulation of the expression of genes of this cluster either directly or indirectly via the regulation of glnR expression.
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- SCO5804/NrdR, which represses the expression of class I and class II ribonucleotide reductases encoding genes (RNRs, nrdAB/sco5225-26, and nrdJ/sco5805) involved in the conversion of ribonucleotides to deoxyribonucleotides [170,171]. NrdR was similarly abundant in both Pi conditions in SL whereas NrdAB were clearly more abundant in Pi proficiency than in Pi limitation in SL (Figure S7A of [9]) but far less abundant in SC than in SL in both Pi conditions (Figure S7A of [9]) suggesting a default in the activation of the expression of these genes in SC.
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- SCO2647 bears similarities with PecS from plant pathogens [172] and is responsive to urate that is generated by xanthine dehydrogenase at the same time as reactive oxygen species (ROS). SCO2647 might thus be induced in conditions of OxS.
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2.2.7. Cluster G: Regulatory Proteins More Abundant in Pi Proficiency than in Pi Limitation in SL but Not in SC
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- The gene encoding the TetR regulator SCO2775 is located upstream of genes (sco2774-73) encoding proteins involved in the β-oxidation of fatty acids and in divergence of genes encoding acetyl/propionyl CoA carboxylase (α/SCO2777 and β/SCO2776 subunits) involved in the biosynthesis of malonyl or methyl-malonylCoA, possibly used for fatty acids and/or polyketide (ACT) biosynthesis. SCO2777 and SCO2776 were highly abundant in SC but poorly abundant in SL, in both Pi conditions (Figure S2A of [9]), suggesting that SCO2775 represses the expression of the corresponding encoding genes, consistently with high ACT production of SC.
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- The gene encoding the regulator SCO4443 is located downstream of a gene encoding a glutathione peroxidase/SCO4444. SCO4444 was more abundant in Pi limitation than in Pi proficiency in SL (Figure S11A of [9]) (but it was the opposite in SC) suggesting that SCO4443 represses SCO4444 expression in Pi proficiency, at least in SL.
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- The gene encoding the regulator MalR/SCO2232 is located in divergence of the maltose transport/utilization operon [177,178] and mediates maltose induction and glucose repression of the maltose transport/utilization operon [179]. Consistently, SCO2231/MalE, putative maltose-binding protein, was mainly abundant in Pi limitation in SL (Figure S15B of [9]). This regulation is obviously altered in SC since MalE was abundant in both Pi conditions in SC. In contrast, the maltose permease SCO2229/MalG (Figure S15D of [9]) was mainly abundant in Pi limitation in SC.
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- The gene encoding the regulator SCO2182 is located upstream of sco2183/aceE1 encoding a putative component E1 of pyruvate dehydrogenase. SCO2183 was similarly abundant in the two strains in Pi proficiency (Figure S1 of [9]) suggesting that SCO2182 positively regulates its expression in Pi proficiency.
2.2.8. Cluster H: Regulatory Proteins More Abundant in Pi Limitation than in Pi Proficiency in SL but Not in SC
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- The response regulator MtrA/SCO3013 of the TCS SCO3013/SCO3012 (MtrB, HK) which, as PhoP, regulates both N and Pi metabolism. MtrA negatively auto-regulates its own expression and that of GlnR/SCO4159 [180,181]. MtrA represses, in condition of N proficiency, the genes that are activated by GlnR/SCO4159 in condition of N limitation [181]. MtrA has a direct, but either positive or negative, impact on the expression of PhoRP and of other genes of Pi metabolism depending on the composition of the growth medium [182]. MtrA also binds to sites located in the promoter regions of genes encoding pathway specific activators ActII-Orf-1, ActII-Orf4, and RedZ and has a negative impact on their expression and thus on ACT and RED biosynthesis [183]. It also represses the expression of bldD (sub-cluster D3) that plays a positive role in the regulation of antibiotic biosynthesis [125]. In contrast, MtrA activates the expression of genes involved in formation of aerial mycelium, including chp, rdl, and ram and regulatory genes of the Bld and Whi families [184]. MtrA thus positively controls morphological differentiation and negatively antibiotic production.
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- The regulator AbsC/SCO5405 plays a role in Zinc (Zn) homeostasis since it negatively controls, together with Zur (cluster F), the expression of the cluster directing the biosynthesis of the zincophore, coelibactin, and of another NRPS cluster with predicted siderophore-like activity [185]. The deletion of AbsC results in elevated expression of these clusters and thus higher Zn availability. Since Zn was shown to have a negative impact on antibiotic biosynthesis [145], the negative impact that AbsC exerts on antibiotic production is thought to be due to enhanced Zn availability [185]. Furthermore, numerous enzymes belonging to carbon and nitrogen metabolism were more abundant in an AbsC mutant suggesting that AbsC negatively regulates their expression [186]. Consistently, most of the enzymes of central carbon and nitrogen metabolism listed in [186] and thought to be under the negative control of AbsC were indeed more abundant in Pi proficiency, when the expression of AbsC is low [9], than in Pi limitation. The cause of the low abundance of AbsC in SC is unknown but is likely to have important consequences on the cellular metabolism of this strain.
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- The gene encoding the sensory HK SCO5829 of the TCS SCO5829/SC5828 (RR) is located downstream of a gene encoding sucrase/ferredoxin-like protein SCO5830 and SCO5831 a citrate synthase-like protein. SCO5831 was clearly more abundant in Pi proficiency than in Pi limitation in SL (Figure 4 of [9]) suggesting that this TCS might repress SCO5831 expression in Pi limitation in SL.
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- Finally, the three cold shock proteins (Csps) SCO0527/ScoF, SCO3731/ScoF1, and SCO4325/CspB were also highly expressed in SL in Pi limitation. Originally, Csps were viewed as nucleic acid chaperons preventing the formation of secondary structures in mRNA at low temperature and thus facilitating the initiation of translation but since the expression of some Csps was shown to be non-cold inducible, they are now viewed as involved in the adaptation to various stresses [187].
2.3. Eukaryotic-Like Serine or Threonine Protein Kinases
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- AfsK/SCO4423 which phosphorylates, together with other ESTPK [196], AfsR/SCO4426, a global regulator, that has a positive impact on antibiotic biosynthesis [153] and morphological differentiation [154,155]. AfsK was also shown to phosphorylate the DnaA initiator protein impairing its interaction with the replication origin and thus inhibiting replication [197].
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- PkaF/SCO2110, whose over-expression was shown to be correlated with a strong reduction of ACT (but not of RED) biosynthesis and an inhibition of morphological differentiation, suggesting that it plays a negative role in the regulation of these processes [198].
3. Discussion
List of Transcriptionnal Regulators and Regulatory Protein Kinases | Impact on Act Biosynth |
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Regulation of Phosphate and/or Nitrogen up-take and assimilation | |
PhoR/SCO4229-PhoP/SCO4230 | Neg [77,78] |
MtrA/SCO3013 | Neg [181] |
GlnR/SCO4159 | Neg [86] |
DasR/SCO5231 (Regulation of N-acetylglucosamine metabolism) | ? |
NnaR/SCO2958 (Regu of nitrate-nitrite up-take and assimilation) | (Neg?) |
SCO7699/EshA (Stringent response) | Pos [159] |
Cell wall stress | |
SigE/SCO3356 | Neg [42,44] |
SigU/ SCO2954 | ? |
TCS CseB/CseC (SCO3358/SCO3359) | Neg [42] |
TCS VanR/VanS | ? |
HypR/SCO6294 (?) | ? |
? | |
Osmotic stress | |
(SigBND/SCO0600) | (Neg?) |
SigH/SCO5243 | ? |
SCO5244 (anti-sigma factor H) | ? |
BldG/SCO3549 (anti-anti-sigma factor) | Pos [36] |
TCS OhkA/OrrA (SCO1596/SCO3008) | Neg [94,95] |
TCS OsaA/SCO5748 -OsaB/SCO5749 | Neg [61] |
Prst/SCO3066 (Anti sigma I factor) | ? |
Oxidative Stress | |
WblA/SCO3579 | Neg [101] |
SigR/SCO5216 | (Neg ?) |
SCO2647 (MarR-like regulator) | (Neg?) |
SCO4180 (Fur-like regulator) | (Neg?) |
SigN/SCO4034 (general stress response) | Pos [49,50] |
Metal homeostasis | |
TCS CutR/SCO5862-CutS/SCO5863 (copper homeostasis) | Neg [104] |
TCS RapA1/SCO5403- RapA2/SCO5404 (copper homeostasis?) | Pos [110] |
SCO0487 (regulator of the coelibactin biosynthetic cluster/zinc homeostasis) | ? |
DmdR1/SCO4394 (regulator of the desferrioxamine biosynthetic cluster/iron homeostasis) | ? |
AbsC/SCO5405 (MarR-like regulator/zinc homeostasis) | Neg [183] |
Zur /SCO2508 (zinc homeostasis) | Neg [141] |
Butyrolactone | |
CprB/SCO0671 (γ-butyrolactone-responsive regulator) | Neg [162,163] |
SlbR/SCO0608 (γ-butyrolactone-responsive regulator) | Neg [113] |
ScbA/SCO6266 (gamma-butyrolactone synthesis) | Neg [56,57] |
AfsR/SCO4426 (γ-butyrolactone-responsive regulator) | Pos [152,156,157] |
Others | |
BldD/SCO5723 (c-di-GMP signaling) | Neg [123] |
SCO6808 | Neg [115] |
SCO1728 | Neg [85] |
PkaF/SCO2110 (ESTPK) | Neg [155] |
RpoZ/SCO1478 (omega sub-unit of RNA polymerase) | Pos [209] |
OdsR/OdsK-SCO0204/SCO0203 (TCS dormancy/survival regulon) | Pos [91] |
Crp/SCO3571 (Cyclic AMP receptor protein) | Pos [82] |
AtrA/SCO4118 | Pos [84] |
AbrC3/SCO4596 (TCS response regulator) | Pos [71,72,73] |
AbrC1/ SCO4598 (TCS sensory histidine kinase) | Pos [71] |
SCO6992 | Pos [102] |
SCO3932 | Pos [127] |
Spa/SCO7629 (starvation sensing protein) | Pos [117] |
MacR/SCO2120 (TCS regulator) | Pos [109] |
BldC/SCO4091 | Pos [111,112] |
TCS DraR/Dra K-SCO3063/SCO3062 | Pos [62] |
Rok7B7/SCO6008 (regulator of the xylose transport operon xylFGH) | Pos [105,106] |
SCO5785 (TCS response regulator) | Pos [128] |
AfsK/SCO4423 (ESTPK) | Pos [195] |
Rex/SCO3320 (Sensor of NAD+/NADH poise) | ? |
SCO5556 (HU DNA-binding protein) | ? |
LexA/SCO5803 (SOS regulatory protein) | ? |
OrnA/SCO2793 (Oligoribonuclease) | ? |
SCO3209 (regulator of para-hydroxybenzoate catabolism) | ? |
SCO1614 (regulator of the ethanolamine utilization pathway) | ? |
PkaH/SCO4775 (ESTPK, regulation of sporulation) | ? |
PglW/SCO6626 (phage resistance) | |
SCO1678 | Pos [161] |
ScrI/SCO4441 | Pos [158] |
CprB/SCO6071 (regulator of γ-butyrolactone biosynthesis) | Neg [162,163] |
NsdA/SCO5582 (Nitrogen metabolism?) | Neg [167,168] |
NsdB/SCO7252 | Neg [164] |
CabB/SCO5464 (calcium homeostasis) | ? |
SCO2832 (regulator of probable amino acid ABC transporter protein) | ? |
BldH/SCO2792 (Activator of aerial mycelium formation) | ? |
SCO2775 | ? |
SCO5804/NrdR (Regulator of ribonucleotide reductase) | ? |
RamC/SCO6681 (ESTPK, activator of aerial mycelium formation) | ? |
4. Materials and Methods
4.1. Bacterial Strains, Media and Culture Conditions
4.2. Total Proteins Extraction and Digestion
4.3. Liquid Chromatography Tandem Mass Spectrometry Analysis
4.4. Protein Identifications
4.5. Label-Free Mass Spectroscopy-Based Relative Protein Quantification
4.6. Protein Abundance Changes and Statistical Analysis
Supplementary Materials
Author Contributions
Funding
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Clara, L.; David, C.; Laila, S.; Virginie, R.; Marie-Joelle, V. Comparative Proteomic Analysis of Transcriptional and Regulatory Proteins Abundances in S. lividans and S. coelicolor Suggests a Link between Various Stresses and Antibiotic Production. Int. J. Mol. Sci. 2022, 23, 14792. https://doi.org/10.3390/ijms232314792
Clara L, David C, Laila S, Virginie R, Marie-Joelle V. Comparative Proteomic Analysis of Transcriptional and Regulatory Proteins Abundances in S. lividans and S. coelicolor Suggests a Link between Various Stresses and Antibiotic Production. International Journal of Molecular Sciences. 2022; 23(23):14792. https://doi.org/10.3390/ijms232314792
Chicago/Turabian StyleClara, Lejeune, Cornu David, Sago Laila, Redeker Virginie, and Virolle Marie-Joelle. 2022. "Comparative Proteomic Analysis of Transcriptional and Regulatory Proteins Abundances in S. lividans and S. coelicolor Suggests a Link between Various Stresses and Antibiotic Production" International Journal of Molecular Sciences 23, no. 23: 14792. https://doi.org/10.3390/ijms232314792