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Article

Metal and Ligand Effect on the Structural Diversity of Divalent Coordination Polymers with Mixed Ligands: Evaluation for Photodegradation

1
Department of Chemistry, Chung-Yuan Christian University, Chung Li, Taoyuan City 320, Taiwan
2
Department of Chemistry, National Taiwan Normal University, Taipei 106, Taiwan
*
Authors to whom correspondence should be addressed.
Molecules 2023, 28(5), 2226; https://doi.org/10.3390/molecules28052226
Submission received: 4 February 2023 / Revised: 23 February 2023 / Accepted: 26 February 2023 / Published: 27 February 2023
(This article belongs to the Special Issue Metal Organic Frameworks: Synthesis and Application II)

Abstract

:
Eight coordination polymers constructed from divalent metal salts, N,N-bis(pyridin-3-ylmethyl)terephthalamide (L), and various dicarboxylic acids are reported, affording [Co(L)(5-ter-IPA)(H2O)2]n (5-tert-H2IPA = 5-tert-butylisophthalic acid), 1, {[Co(L)(5-NO2-IPA)]⋅2H2O}n (5-NO2-H2IPA = 5-nitroisophthalic acid), 2, {[Co(L)0.5(5-NH2-IPA)]⋅MeOH}n (5-NH2-H2IPA = 5-aminoisophthalic acid), 3, {[Co(L)(MBA)]⋅2H2O}n (H2MBA = diphenylmethane-4,4′–dicarboxylic acid), 4, {[Co(L)(SDA)]⋅H2O}n (H2SDA = 4,4-sulfonyldibenzoic acid), 5, {[Co2(L)2(1,4-NDC)2(H2O)2]⋅5H2O}n (1,4-H2NDC = naphthalene-1,4-dicarboxylic acid), 6, {[Cd(L)(1,4-NDC)(H2O)]⋅2H2O}n, 7, and {[Zn2(L)2(1,4-NDC)2]⋅2H2O}n, 8, which were structurally characterized by using single-crystal X-ray diffraction. The structural types of 18 are subject to the metal and ligand identities, showing a 2D layer with the hcb, a 3D framework with the pcu, a 2D layer with the sql, a polycatenation of 2-fold interpenetrated 2D layer with the sql, a 2-fold interpenetrated 2D layer with the 2,6L1, a 3D framework with the cds, a 2D layer with the 2,4L1, and a 2D layer with the (102⋅12)(10)2(4⋅10⋅124)(4) topologies, respectively. The investigation on the photodegradation of methylene blue (MB) by using complexes 13 reveals that the degradation efficiency may increase with increasing surface areas.

Graphical Abstract

1. Introduction

Coordination polymers (CPs) have been intensively investigated by scientists in recent years because of their intriguing architectures and prospective applications in magnetism, luminescence, catalysis, gas storage, and sensing [1,2,3,4]. The coordination of spacer ligands to metal ions during the self-assembly process may result in the production of infinite one-dimensional (1D), two-dimensional (2D), or three-dimensional (3D) CPs, which are subject to the careful selection of metal ion and spacer ligands with diverse functionalities and flexibility. Despite the fact that many fascinating CPs have been reported, control of the structural variety remains a difficulty in the field of crystal engineering, and the factors that influence the structural diversity are less well understood [5,6].
The mixed ligand assembly technique has been employed to develop novel CPs [7]. In this context, mixed-ligand techniques including two distinct types of ligands with unique functions, such as polycarboxylate paired with a bis-pyridyl-bis-amide (bpba)-based N donor ligand, have been introduced as an effective way for adjusting structural diversity in CPs. Bpba ligands are remarkable ligands that may be modified to yield intriguing CPs [8], due to the fact that the majority of bpba ligands are flexible; however, others are semi-rigid.
Herein, we adopted the semi-rigid N,N-bis(pyridin-3-ylmethyl)terephthalamide (L), as shown in Figure 1, and differently substituted dicarboxylic acid as part of our ongoing research into understanding the relationship between the mixed-ligand system and the structural variety of the new CPs. Several CPs containing L and dicarboxylate ligands have been structurally characterized. Three CPs, namely [Co(L)(HIPA)(H2O)2]⋅H2O (H2HIPA = 5-Hydroxyisophthalic acid), [Ni(L)(HIPA)(H2O)2]⋅H2O, and [Cu(L)(HIPA)]⋅4H2O, show similar 2D cellular networks for the first two complexes, and the latter has a 4-connected 3D structure with a semicircle 1D channel [9]. On the other hand, [Zn(L)(1,4-BDC)]·H2O (1,4-H2BDC = terephthalic acid), [Zn(L)(1,3- BDC)]·H2O (1,3-H2BDC = isophthalic acid), [Zn(L)(1,2-BDC)] (1,2-H2BDC = phthalate), and [Cd(L)0.5(1,2-BDC)(H2O)] display 2D structures with 63 and 44 topologies and a 4-connected 3D framework and a 1D structure, respectively [10], whereas [Cd3(L)2(1,4-bdc)3]·4H2O and [Cd(L)(1,4-bdc)]·2H2O are (3,5)-connected nets with the (3⋅72 )(32⋅4⋅75⋅82 ) topology [11], indicating that the types of the dicarboxylate play important role in determining the structural diversity.
The syntheses and crystal structures of [Co(L)(5-ter-IPA)(H2O)2]n (5-tert-H2IPA = 5-tert-butylisophthalic acid), 1, {[Co(L)(5-NO2-IPA)]⋅2H2O}n (5-NO2-H2IPA = 5-nitroisophthalic acid), 2, {[Co(L)0.5(5-NH2-IPA)]⋅MeOH}n (5-NH2-H2IPA = 5-aminoisophthalic acid), 3, {[Co(L)(MBA)]⋅2H2O}n (H2MBA = diphenylmethane-4,4′–dicarboxylic acid), 4, {[Co(L)(SDA)]⋅H2O}n (H2SDA = 4,4-sulfonyldibenzoic acid), 5, {[Co2(L)2(1,4-NDC)2(H2O)2]⋅5H2O}n (1,4-H2NDC = naphthalene-1,4-dicarboxylic acid), 6, {[Cd(L)(1,4-NDC)(H2O)]⋅2H2O}n, 7, and {[Zn2(L)2(1,4-NDC)2]⋅2H2O}n, 8, form the subject of this report. We observed that the roles of the dicarboxylate ligands and the metal atoms in the structural diversity of the CPs prepared thusly are significant. The governing factors of 13 in the degradation of methylene blue (MB) were also evaluated.

2. Results and Discussion

2.1. Synthesis

Complexes 18 were prepared by the hydro(solvo)thermal reactions of L with corresponding dicarboxylic acids and metal salts in different solvent systems at 100 °C for 48 h. Hydro(solvo)thermal synthesis enables a unique combination of pressure and temperature for crystallization of CPs. Characteristic FT-IR peaks for complexes 18 are N-H and C=O stretching which are from L. The range of N-H stretching is 3386–3483 cm−1, probably coupled with the O-H stretching of the solvent molecule, while those around 1606–1653 cm–1 can be attributed to C=O stretching.

2.2. Crystal Structure of 1

The crystal structure of 1 conforms to the triclinic space group Pī and the asymmetric unit consists of one Co(II) cation, two halves of an L ligand, one 5-ter-IPA2− ligand, and two coordinated water molecules. The Co(II) metal center is coordinated by two pyridyl nitrogen atoms of two L ligands [Co-N = 2.1346(12) − 2.1816(12) Å], two oxygen atoms from two 5-ter-IPA2− ligands [Co-O = 2.0587(10) and 2.1362(10) Å], and two coordinated water molecules [Co-O = 2.0794(10) and 2.1411(10) Å], forming a distorted octahedral geometry, as in Figure 2a. Two Co(II) ions are bridged by two 5-ter-IPA2− ligands to form dinuclear units, which are connected by L ligands to afford a 2D layer. Considering the Co(II) cations as 4-coordinated nodes, 5-ter-IPA2 as 2-connected nodes, and L ligands as linkers, the structure of 1 can be regarded as a 2,2,4-connected net with the point symbol (12)(4⋅125)(4) (standard representation), as in Figure 2b, determined using ToposPro [12]. Moreover, if the dinuclear units are considered as 3-coordinated nodes, the structure can be further simplified as a 3-connected net with the (63)-hcb topology (cluster representation) [13], as in Figure 2c.

2.3. Crystal Structure of 2

The structure of 2 was solved in the triclinic space group Pī with one Co(II) cation, two halves of an L ligand, one 5-NO2-IPA2− ligand and two co-crystallized water molecules in each asymmetric unit. The Co(II) metal center is coordinated by four oxygen atoms from three 5-NO2-IPA2− ligands [Co-O = 2.007(2) – 2.240(2) Å] and two pyridyl nitrogen atoms from two L ligands [Co-N = 2.149(3) – 2.150(3) Å], resulting in a distorted octahedral geometry, as in Figure 3a. Two Co(II) ions are bridged by two 5-NO2-IPA2− ligands to form dinuclear units, which are connected by L ligands to afford a 3D framework. Considering the Co(II) cations as 5-coordinated nodes, 5-NO2-IPA2− as 3-coordinated nodes, and L ligands as linkers, the structure of 2 can be regarded as a 3,5-connected binodal 3D net with the point symbol of (42⋅65⋅83)(42⋅6)-3,5T1 (standard representation), as in Figure 3b. Moreover, if the dinuclear units are considered as 6-coordinated nodes, the structure can be further simplified as a 6-connected net with the (412⋅63)-pcu topology (cluster representation), as in Figure 3c.

2.4. Crystal Structure of 3

Structural analysis demonstrates that 3 crystallizes in the triclinic Pī space group. The asymmetric unit contains one Co(II) cation, half of an L ligand, one 5-NH2-IPA2−, and one co-crystallized MeOH molecule. The Co(II) metal center is coordinated by four oxygen atoms from three 5-NH2-IPA 2− ligands [Co-O = 2.0143(15)–2.2104(14) Å], one pyridyl nitrogen atom from the L ligand, and one nitrogen from the 5-NH2-IPA2− ligand [Co-N = 2.1525(19)–2.2615(18) Å], showing a distorted octahedral geometry, as in Figure 4a. Two Co(II) ions are bridged by two 5-NH2-IPA2− ligands to form dinuclear units, which are connected by L ligands to afford a 2D layer. Considering the Co(II) cations as 4-connected nodes and 5-NH2-IPA2− ligands as 3-connected nodes, with L ligands as linkers, the structure of 3 can be simplified as a 3,4-connected 2D net with the {42⋅63⋅8}{42⋅6}-bey topology (standard representation), as in Figure 4b. Moreover, if the dinuclear units are considered as 4-coordinated nodes, the structure can be further simplified as a 4-connected net with the (44⋅62)-sql topology (cluster representation), as in Figure 4c.

2.5. Crystal Structure of 4

Single crystal X-ray diffraction of 4 conforms to the orthorhombic space group Ibca, and the asymmetric unit consists of half of a Co(II) ion, half of an L ligand, half of an MBA2− ligand, and one co-crystallized water molecule. Figure 5a shows the coordination environment around the Co(II) metal center, which is six coordinated by two nitrogen atoms from two L ligands [Co-N = 2.083(3)] and four oxygen atom from two MBA2− ligands [Co-O = 2.064(2) – 2.263(3) Å], resulting in a distorted octahedral geometry. The Co(II) ions are interlinked by the L and MBA2− ligands to give highly undulated 2D nets, as in Figure 5b. Topological analysis reveals that complex 4 forms 2-fold parallelly interpenetrated layers with the {44⋅62}-sql topology, as in Figure 5c. In addition, layers of the 2-fold interpenetrated 2D layers polycatenated with other sql layers to form a final 2D → 3D entanglement, as in Figure 5d.

2.6. Crystal Structures of 5

In the space group Pī, the structure of complex 5 was solved. The asymmetric unit consists of one Co(II) ion, half of an L ligand, one SDA2− ligand, and one co-crystallized water molecule. Figure 6a shows the coordination environment around the dinuclear Co(II) centers with a Co---Co distance of 2.8143(5). Both Co(1) and Co(2) are 5-coordinated by one pyridyl nitrogen atom of the L ligand [Co–N = 2.0564(17) Å] and four oxygen atoms of four SDA2− ligands [Co–O = 2.0211(17) Å–2.0515(17) Å], resulting in a distorted square pyramidal geometry. Two Co(II) ions are bridged by four carboxylate groups of the SDA2− ligands to form dinuclear paddlewheel units, which are further linked by the L ligands to form a 2D layer. If the dinuclear units are considered as 6-connected nodes, the SDA2− ligands as 2-connected nodes, and the L ligands as linkers, the structure of 5 can be simplified as a 2D net with the (42⋅68⋅8⋅104)(4)2-2,6L1 topology, as in Figure 6b, which shows a 2-fold interpenetration, as in Figure 6c.

2.7. Crystal Structures of 6

Crystals of 6 conform to the monoclinic space group P21/c with each asymmetric unit consisting of one and two halves of a Co(II) cation, two L ligands, two 1,4-NDC2− ligands, two coordinated water molecules, and five co-crystallized water molecules. Figure 7a shows the coordination environment of the Co(II) metal centers, which are all 6-coordinated. The Co(1) atom is coordinated by two nitrogen atoms from two L ligands [Co-N = 2.134(2) and 2.138(2) Å], three oxygen atoms from two 1,4-NDC2− ligands [Co–O = 2.0257(18) Å – 2.19740515(19) Å], and one oxygen atom from the coordinated water molecule [Co-O = 2.0817(19) Å]. The Co(2) atom is located at the inversion center, which is coordinated by two pyridyl nitrogen atoms [Co–N = 2.114 (2) Å] from two L ligands and four oxygen atoms from two 1,4-NDC2− ligands [Co–O = 2.1128(17)–2.1415(18) Å], whereas the Co(3) atom, which is also located at the inversion center, is coordinated by two nitrogen from two L ligands [Co–N = 2.145(2) Å], two oxygen atoms from two 1,4-NDC2− ligands [Co–O = 2.0813(17)] and two oxygen atoms from two water molecules [Co–O = 2.1497(18)]. The Co(II) ions are linked by the 1,4-NDC2− and L ligands to form a 3D framework. If the Co(II) ions are defined as 4-connected nodes and the L and 1,4-NDC2− ligands as linkers, the structure of 6 can be simplified as a 4-connected net with the (65⋅8)-cds topology, as in Figure 7b.

2.8. Crystal Structures of 7

Single-crystal X-ray diffraction analysis shows that 7 crystallizes in the monoclinic space group P21/c. The asymmetric unit is comprised of one Cd(II) cation, one L ligand, one 1,4-NDC2− ligand, one coordinated water, and two lattice water molecules. Figure 8a depicts a drawing showing the coordination environment of the Cd(II) ion, which is 7-coordinated by four oxygen atoms from two 1,4-NDC2− ligands, one oxygen atom from the water molecule [Cd–O = 2.343(2) − 2.396(19) Å], and two pyridyl nitrogen atoms from two L ligands [Cd–N = 2.319(2) and 2.410(3) Å]. The Cd (II) ions are further linked together by the L and 1,4-NDC2− ligands to afford a 2D layer. If the Cd(II) cations are defined as 4-connected nodes and the 1,4-NDC2− and L ligands are defined as 2-connected nodes, the structure of 7 can be simplified as a 2D net with the {4⋅58}{4}-2,4L1 topology, as in Figure 8b.

2.9. Crystal Structures of 8

The crystals of complex 8 conform to the triclinic space group Pī with two Zn(II) ions, two L ligands, two 1,4-NDC2− ligands, and two lattice water molecules in the asymmetric unit. Figure 9a shows the coordination environment of the Zn(II) centers. Both of the Zn(1) and Zn(2) atoms form tetrahedral geometries, which are 4-coordinated by two nitrogen atoms [Zn(1)–N(1) = 2.066(3); Zn(1)–N(4C) = 2.062(3) Å; Zn(1)–N(5) = 2.056(3) Å; Zn(1)–N(8A) = 2.066(3) Å] from two L ligands and two oxygen atoms [Zn(1)–O(5) = 1.967(3) Å; Zn(1)–O(9) = 1.975(2); Zn(1)–O(7) = 1.969(2) Å; Zn(1)–O(12B) = 1.948(2)] from two 1,4-NDC2− ligands. Topological analysis demonstrates that complex 8 displays a 2D net with the point symbol of (102⋅12)(10)2(4⋅10⋅124)(4), as in Figure 9b.

2.10. Ligand Conformations and Coordination Modes

The L ligands in complexes 18 display various conformations which can be defined as follows: (A) the cis and trans conformations can be given if the two C=O groups are in the same and the opposite direction, respectively; (B) due to the different orientations adopted by the pyridyl nitrogen atoms and the amide oxygen atoms, three more conformations, namely syn–syn, syn–anti, and antianti, can also be found for bpba [8]. Table 1 lists the ligand conformations and coordination modes of the organic ligands in complexes 18. The L ligands in 18 bridge two metal ions through two pyridyl nitrogen atoms, adopting five different conformations including trans anti–anti, cis syn–syn, trans syn–syn, trans syn–anti and cis anti–anti. On the other hand, the dicarboxylate ligands in 18 bridge two to four metal ions with various coordination modes.

2.11. Structural Comparisons

Structural comparisons of complexes 18 show that the structural diversity is subject to the change in the dicarboxylate ligand. The different structural types in 13 demonstrate the substituent effect of the group at the fifth position of the phenyl ring. The use of the angular dicarboxylic acids, such as H2MBA and H2SDA, give entangled 4 and 5, showing a polycatenated net of 2-fold interpenetration and a 2-fold interpenetrated net, respectively. The metal effect on the structural diversity is shown in 68 by changing the metal atom from Co, Cd, to Zn, giving cds, 2,4L1, and (102⋅12)(10)2(4⋅10⋅124)(4) topologies, respectively.

2.12. Photodegradation

The governing role of CPs in the photodegradation of organic pollutants has been a subject of current interest [14,15,16,17,18,19]. Complexes 13, which differ in the fifth position of the phenyl ring of the dicarboxylate ligands, i.e., the tert-butyl, NO2 and NH2 groups, respectively, thus, provide a unique opportunity to compare the substituent effect on the photodegradation. Methylene blue (MB, C16H18ClN3S) was selected as the dye contaminant, and the experiments were carried out with 30 wt % H2O2 under 365 nm UV light. Time-dependent absorption spectra of the MB solutions under 365 nm UV light are provided as Figures S1–S8.
The intensity of the peculiar absorption band at 663 nm was utilized to precisely monitor the degradation process of MB. Figure 10 illustrates the variations in the At/A0 of MB solutions vs irradiation time for complexes 1–3, showing that the absorption intensities of MB reduced gradually with increasing reaction time, where A0 is the initial absorbance of the MB solution and At is the absorbance of the solution after illumination at time t. Degradation efficiency (DE) of MB was calculated by using DE % = [(A0 − At)/A0] × 100. Additionally, the DE % with the mean values and standard deviations were evaluated, Tables S1–S8. After 120 min, the DE of MB for the various strategies are as follows: 3% (blank), 53.46% (MB + H2O2), 6% (MB + complex 1), 10.42% (MB + complex 2), 16.43% (MB + complex 3), 61.35% (MB + H2O2 + complex 1), 77.59% (MB + H2O2 + complex 2), and 95.06% (MB + H2O2 + complex 3), demonstrating that the DE % of MB by the complexes participated with H2O2 follows the pattern of 1 < 2 < 3. Moreover, the Brunauer–Emmett–Teller (BET) surface areas obtained from the N2 adsorption experiments were 4.96, 6.12, and 9.95 m²/g for 13, respectively, as in Figures S9–S11. The PXRD patterns of complexes 13 succeeding photodegradation processes were examined. No noticeable alterations were found for 1 and 2, whereas significant change has been observed for 3, as illustrated in Figures S12–S14. The structural change in 3 may enhance the photodegradation efficiency. Structural modification was also observed for 3 after the N2 adsorption and desorption, as in Figures S15–S17, indicating that complex 3 was not stable during the experiments.
Although the role of the tert-butyl, NO2, and NH2 groups in determining the DE is complicated, the different BET surface areas of the original 13 resulting from the different substituent groups can be influential. The hydroxyl radical (OH⋅) has been considered as the major oxidant which decomposes the organic dye with a good efficiency [15]. High surface area reflects a higher adsorption quantity of H2O2 that led to the formation of (OH⋅) and, thus, implies more MB can be degraded. For comparisons it is noted that the CPs {[Zn(L2)(AIPA)]·2H2O}n (L2 = N,N′-bis(3-pyridinyl)terephthalamide; H2AIPA = 5-acetamidoisophthalic acid) and {[Zn(L3)(AIPA)]·2H2O}n (L3 = N,N′-di(3-pyridyl)adipoamide), which adopted self-catenated 3D frameworks with the (424·64)-8T2 and the (44·610·8)-mab topologies, respectively, promoted the MB degradation, and the DE were 81.56 and 85.46%, respectively [20]. On the other hand, the four topologically identical CPs having the 2-fold interpenetrating 3D net with the mog topology, {[M(L4)0.5(L5)(H2O)2]⋅H2O}n (M = Co and Ni; H4L4 = bis(3,5-dicarboxyphenyl)adipoamide; L5 = bis(N-pyrid-3-ylmethyl) adipoamide) and {[M2(L4)(L6)2(H2O)4]⋅3H2O}n (M = Co and Ni; L6 = bis(N-pyrid-3-ylmethyl) suberoamide) also display good photodegradation performance toward MB, and the Co(II) CPs display better catalytic ability than the Ni(II) ones [21].

3. Materials and Methods

3.1. General Procedures

Elemental analyses involving C, H, and N atoms were performed on a PE 2400 series II CHNS/O (PerkinElmer instruments, Shelton, CT, USA) or an Elementar Vario EL-III analyzer (Elementar Analysensysteme GmbH, Hanau, Germany). Infrared spectra were obtained from a JASCO FT/IR-460 plus spectrometer with pressed KBr pellets (JASCO, Easton, MD, USA). Powder X-ray diffraction patterns were carried out with a Bruker D8-Focus Bragg–Brentano X-ray powder diffractometer equipped with a CuKα (λα = 1.54178 Å) sealed tube (Bruker Corporation, Karlsruhe, Germany).

3.2. Materials

The reagents Co(OAc)2·4H2O, Cd(OAc)2·H2O and Zn(OAc)2·2H2O were purchased from Alfa Aesar (Ward Hill, MA, USA), whereas 5-tert-butylisophthalic acid (5-tert-H2IPA), 5-nitroisophthalic acid (5-NO2-H2IPA), 5-aminoisophthalic acid (5-NH2-H2IPA ), diphenylmethane-4,4′–dicarboxylic acid (H2MBA ), 4,4-sulfonyldibenzoic acid (H2SDA), and naphthalene-1,4-dicarboxylic acid (1,4-H2NDC) were from Aldrich Chemical Co. (St. Louis, MO, USA). The ligand N,N′-bis(pyridin-3-ylmethyl)terephthalamide (L) was prepared according to a published procedure [22].

3.3. Preparations

3.3.1. [Co(L)(5-ter-IPA)(H2O)2]n, 1

A 23 mL Teflon-lined steel autoclave was sealed with Co(OAc)2⋅4H2O (0.050 g, 0.20 mmol), L (0.070 g, 0.20 mmol), 5-tert-H2IPA (0.042 g, 0.20 mmol), and 10mL H2O, which was heated to 100 °C for two days and then cooled to room T at a rate of 2 °C per hour. Orange crystals formed, which were collected and purified. Yield: 0.061 g (46%). Anal. calcd for C32H34CoN4O8 (MW = 661.56): C, 58.1; H, 5.1; N, 8.5%. Found: C, 58.8; H, 5.3; N, 8.7%. FT-IR (cm−1): 3420(s), 2965(w), 1663(m), 1606(m), 1536(m), 1479(m), 1431(m), 1372(m), 1281(w), 1187(w), 1107(m), 1038(w), 933(m), 786(s), and 710(s).

3.3.2. {[Co(L)(5-NO2-IPA)]⋅2H2O}n, 2

Purple crystals of 2 were prepared by following similar procedures for 1, except that 5-NO2-H2IPA (0.042 g, 0.20 mmol) was used. Yield: 0.065 g (50%). Anal. calcd for C28H25CoN5O10 (MW = 650.46): C, 51.7; H, 3.9; N, 10.8%. Found: C, 52.2; H, 3.6; N, 10.8%. FT-IR (cm−1) :3473(s),3386(s),3263(s),3083(m), 1647(m), 1613(m), 1556(m), 1530(m), 1464(m), 1392(m), 1346(m), 1288 (w), 1083(w), 1038(w), 996(m), 736(s), 718(s), and 702(s).

3.3.3. {[Co(L)0.5(5-NH2-IPA)]⋅MeOH}n, 3

Complex 3 was prepared by following similar procedures for 1, except that 5-NH2-H2IPA (0.036 g, 0.20 mmol) in 10 mL of MeOH/H2O was used. Red crystals were collected. Yield: 0.064 g (72%). Anal. calcd for C19H18CoN3O6 (MW = 443.29): C, 51.5; H, 4.1; N, 9.5%. Found: C, 51.2; H, 3.7; N, 9.5%. FT-IR (cm−1): 3389(s),3326(s), 1653(m), 1546(m), 1530(m), 1451(m), 1404(m), 1346(m), 1278 (w), 1055(w), 1033(w), 957(m), 781(s), 729 (s), and 711(s).

3.3.4. {[Co(L)(MBA)]⋅2H2O} n, 4

Complex 4 was prepared by following similar procedures for 1, except that a mixture of Co(OAc)2⋅4H2O (0.05 g, 0.20 mmol), L (0.070 g, 0.20 mmol), and MBA (0.052 g, 0.20 mmol) in 10 mL of H2O was used. Purple crystals were obtained. Yield: 0.084 g (60%). Anal. calcd for C35H32CoN4O8 (MW = 695.57): C, 60.4; H, 4.6; N, 8.1%. Found: C, 60.7; H, 4.3; N, 7.7%. FT-IR (cm−1): 3450 (s), 2920(m),2850(m), 1629(m), 1613(m), 1469(s), 1392(m), 1358(m), 1301(w), 871(m), 760(s), 727(w), and 702(w).

3.3.5. {[Co(L)(SDA)]⋅H2O}n , 5

Complex 5 was prepared by following similar procedures for 1, except that a mixture of Co(OAc)2.4H2O (0.025 g, 0.10 mmol), L (0.035 g, 0.10 mmol), SDA (0.031 g, 0.10 mmol), and 8 mL of H2O in 2 mL of MeOH was used. Violet crystals were obtained. Yield: 0.023 g (41%). Anal. calcd for C24H19CoN2O8S (MW = 554.40): C, 52.0; H, 3.4; N, 5.1%. Found: C, 51.9; H, 3.4; N, 6.5%. The large inconsistency of the N atom may be due to the fact that the crystals used for measurement suffered the loss of co-crystallized solvents or the contamination of minor product which was not able to be removed. FT-IR (cm−1): 3428(s), 2925(s), 2851(m), 3083(m), 1648(m), 1549(m), 1418(m), 1301(m), 1173(m), 1127(m), 1035(w), 1288 (w), 992(w), 862(w), 762 (s), and 700(s).

3.3.6. {[Co2(L)2(1,4-NDC)2(H2O)2]⋅5H2O}n, 6

Complex 6 was prepared by following similar procedures for 1, except that a mixture of Co(OAc)2·4H2O (0.025 g, 0.10 mmol), 1,4-H2NDC (0.022 g, 0.10 mmol), and L (0.035 g, 0.10 mmol) in 10 mL H2O was used, and the reaction was carried out at 80 °C. Pink crystals were obtained. Yield: 0.055 g (81%). Anal. calcd for C64H62Co2N8O19 (MW = 1365.07): C, 56.3; H, 4.6; N, 8.2%. Found: C, 56.8; H, 4.3; N, 8.8%. IR (cm−1): 3483(s), 3314(s), 2915(m), 1649(s), 1546(s), 1428(m), 1349(m), 1295(m), 1256(w), 1198(w), 1051(m), 977(s), and 838(m).

3.3.7. {[Cd(L)(1,4-NDC)(H2O)]⋅2H2O}n, 7

Prepared as described for 6, except that Cd(OAc)2·H2O (0.027 g, 0.10 mmol) was used. Colorless crystals were obtained. Yield: 0.039 g (54%). Anal. calcd for C32H30CdN4O9 (MW = 727.00): C, 52.7; H, 4.1; N, 7.7%. Found: C, 52.7; H, 3.8; N, 7.5%. IR (cm−1): 3436(s), 1643(s), 1559(m), 1428(s), 1367(s), 1284(m), 1234(m), 1189(m), 1117(w), 1058(w), 873(m), 846(s), and 700(m).

3.3.8. {[Zn2(L)2(1,4-NDC)2]⋅2H2O}n, 8

Complex 8 was prepared by following similar procedures to those for 6, except that a mixture of Zn(OAc)2·2H2O (0.022g, 0.10 mmol) was used. Colorless crystals were obtained. Yield: 0.061 g (95%). Anal. calcd for C64H52Zn2N8O14 (MW = 1287.87): C, 59.7; H, 4.1; N, 8.7%. Found: C, 60.4; H, 3.7; N, 8.7%. IR (cm−1): 3330(s), 3060(m), 2929(w), 1644(s), 1600(s), 1540(s), 1430(m), 1328(m), 1291(w), 1257(w), 1193(m), 1123(w), 833(m), 786(m), and 701(m).

3.4. Powder X-ray Analysis and IR Spectra

In order to check the phase purity of the product, powder X-ray diffraction (PXRD) experiments were carried out for complexes 18. As shown in Figures S18–S25, the peak positions of the experimental and simulated PXRD patterns were in a good agreement with each other, indicating their bulk purities. The IR spectra of complexes 18 are provided in the Supplementary Materials as Figure S26.

3.5. Procedures for Photodegradation

The experiments were carried out in a homemade photodegradation box (Figure S27). For the experiments, test tube 1 (blank), tube 2 (0.1 mL H2O2), tube 3 (10 mg complex), and tube 4 (10 mg complex + 0.1 mL H2O2) were prepared. A total of 10 mL of a 10 ppm MB solution was added to each tube, which was prepared by diluting 10 mg MB with deionized water in a 1000 mL quantitative bottle. Each tube was then irradiated with the 365 nm UV light for 20, 40, 60, 80, 100, and 120 min, respectively, and then their absorption spectra were measured. Tube 3 and tube 4 were first stirred in the dark for 15 min to confirm the physical adsorption of the complex.

3.6. X-ray Crystallography

Single-crystal X-ray diffraction data for complexes 18 were collected on a Bruker AXS SMART APEX II CCD diffractometer with graphite-monochromated MoKα (λα = 0.71073 Å) radiation at 296 K [23]. Data reduction and absorption correction were performed by using standard methods with well-established computational procedures. Some of the heavier atoms were located by the direct or Patterson method, and the remaining atoms were found in a series of Fourier maps and least-squares refinements, while the hydrogen atoms were added by using the HADD command in SHELXTL [24]. Table 2 lists the basic information pertaining to crystal parameters and structure refinement. CCDC no. 2238099–2238106 contain the supplementary crystallographic data for this paper. These data can be obtained free of charge via http://www.ccdc.cam.ac.uk/conts/retrieving.html or from the Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge CB2 1EZ, UK; fax: +44 1223 336 033; e-mail: deposit@ccdc.cam.ac.uk; or at: http://www.ccdc.cam.ac.uk.

4. Conclusions

Eight divalent CPs constructed from L and various dicarboxylic acids have been successfully accomplished. The changes in the substituted group at the fifth position of the phenyl rings of the dicarboxylic acids from tert-butyl and NO2 to the NH2 group drastically alters the structural types, affording the simplified structures with the hcb, pcu, and sql topologies for complexes 13, respectively. The use of the angular dicarboxylic acids, such as H2MBA and H2SDA, gave entangled CPs 4 and 5, showing a polycatenation of a 2-fold interpenetrated 2D layer with the sql and a 2-fold interpenetrated 2D layer with the 2,6L1 topologies, whereas the metal effect on the structural diversity can be shown in complexes 68 by changing the metal atom from Co, Cd to Zn, affording a 3D framework with the cds, a 2D layer with the 2,4L1, and a 2D layer with the (102⋅12)(10)2(4⋅10⋅124)(4) topologies, respectively. The structural diversity of the semi-rigid L-based divalent CPs is, thus, subject to the identities of the metal atom and the dicarboxylic acid. The degradation efficiency toward MB that follows 1 < 2 < 3 can be ascribed to their increasing surface areas, resulting from the different substituent groups of tert-butyl, NO2, and NH2 at the fifth position of the phenyl ring of the respective dicarboxylate ligands.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/molecules28052226/s1, UV-vis spectra (Figures S1–S8). Degradation efficiency (Tables S1–S8). N2 sorption isotherm (Figures S9–S11). PXRD patterns (Figures S12–S25). IR spectra (Figure S26). Photodegradation box (Figure S27).

Author Contributions

Investigation, M.G.; data curation, S.-Y.Z.; review and supervision, C.-H.L. and J.-D.C. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by the National Science and Technology Council of the Republic of China: NSC 109-2113-M-033-009.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

Data are contained within the article or Supplementary Materials.

Acknowledgments

We are grateful to the National Science and Technology Council of the Republic of China for support.

Conflicts of Interest

The authors declare no conflict of interest.

Sample Availability

Samples of the compounds are available from the authors.

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Figure 1. Structure of L.
Figure 1. Structure of L.
Molecules 28 02226 g001
Figure 2. (a) A drawing showing the geometry of the Co(II) ion in 1. Symmetry transformations: (A) –x + 1, −y + 1, −z. (b) A drawing showing the (12)(4⋅125)(4) topology. (c) A drawing showing the hcb topology.
Figure 2. (a) A drawing showing the geometry of the Co(II) ion in 1. Symmetry transformations: (A) –x + 1, −y + 1, −z. (b) A drawing showing the (12)(4⋅125)(4) topology. (c) A drawing showing the hcb topology.
Molecules 28 02226 g002
Figure 3. (a) Coordination environment of the Co(II) ion in 2. Symmetry transformations: (A) −x + 1, −y, −z; (B) x + 1, y, z. (b) A drawing showing the 3,5T1 topology. (c) A drawing showing the pcu topology.
Figure 3. (a) Coordination environment of the Co(II) ion in 2. Symmetry transformations: (A) −x + 1, −y, −z; (B) x + 1, y, z. (b) A drawing showing the 3,5T1 topology. (c) A drawing showing the pcu topology.
Molecules 28 02226 g003
Figure 4. (a) Coordination environment about the Co(II) ion in 3. Symmetry transformations: (A) –x − 1, −y, −z + 2; (B) –x − 1, −y + 1, −z + 2; (C) x − 1, y, z. (b) A drawing showing the bey topology. (c) A drawing showing the sql topology.
Figure 4. (a) Coordination environment about the Co(II) ion in 3. Symmetry transformations: (A) –x − 1, −y, −z + 2; (B) –x − 1, −y + 1, −z + 2; (C) x − 1, y, z. (b) A drawing showing the bey topology. (c) A drawing showing the sql topology.
Molecules 28 02226 g004
Figure 5. (a) Coordination environment around the Co(II) cation in 4. Symmetry transformations used to generate equivalent atoms: (A) –x + 1, −y + 3/2, z. (b) A drawing showing the pleated 2D layer. (c) A drawing showing the 2-fold interpenetrated layers. (d) A drawing showing the polycatenation of 2-fold interpenetrated 2D nets.
Figure 5. (a) Coordination environment around the Co(II) cation in 4. Symmetry transformations used to generate equivalent atoms: (A) –x + 1, −y + 3/2, z. (b) A drawing showing the pleated 2D layer. (c) A drawing showing the 2-fold interpenetrated layers. (d) A drawing showing the polycatenation of 2-fold interpenetrated 2D nets.
Molecules 28 02226 g005
Figure 6. (a) The coordination environment of the Co(II) ion in 5. Symmetry transformations used to generate equivalent atoms: (A) x, y, z − 1; (B) –x + 2, −y + 2, −z + 2; (C) –x + 2, −y + 2, −z + 3. (b) A schematic drawing showing the 2D layer with the 2,6L1 topology. (c) A schematic drawing showing the 2-fold interpenetrated 2D net.
Figure 6. (a) The coordination environment of the Co(II) ion in 5. Symmetry transformations used to generate equivalent atoms: (A) x, y, z − 1; (B) –x + 2, −y + 2, −z + 2; (C) –x + 2, −y + 2, −z + 3. (b) A schematic drawing showing the 2D layer with the 2,6L1 topology. (c) A schematic drawing showing the 2-fold interpenetrated 2D net.
Molecules 28 02226 g006
Figure 7. (a) The coordination environment of the Co(II) ion in 6. Symmetry transformations used to generate equivalent atoms: (A) x, −y + 3/2, z + 1/2; (B) –x + 1, y − 1/2, −z − 1/2; (C) –x + 2, −y + 2, −z − 1; (D) –x + 2, −y + 2, −z − 2. (b) A drawing showing the cds topology.
Figure 7. (a) The coordination environment of the Co(II) ion in 6. Symmetry transformations used to generate equivalent atoms: (A) x, −y + 3/2, z + 1/2; (B) –x + 1, y − 1/2, −z − 1/2; (C) –x + 2, −y + 2, −z − 1; (D) –x + 2, −y + 2, −z − 2. (b) A drawing showing the cds topology.
Molecules 28 02226 g007
Figure 8. (a) The coordination environment of the Co(II) ion in 7. Symmetry transformations used to generate equivalent atoms: (A) x, −y + 3/2, z + 1/2; (B) –x + 1, −y + 1, −z + 1. (b) A drawing showing the 2,4L1 topology.
Figure 8. (a) The coordination environment of the Co(II) ion in 7. Symmetry transformations used to generate equivalent atoms: (A) x, −y + 3/2, z + 1/2; (B) –x + 1, −y + 1, −z + 1. (b) A drawing showing the 2,4L1 topology.
Molecules 28 02226 g008
Figure 9. (a) The coordination environment of the Co(II) ion in 8. Symmetry transformations used to generate equivalent atoms: (A) −x, −y + 2, −z + 2; (B) x, y, z – 1; (C) -x, −y + 1, −z + 1. (b) A drawing showing the (102⋅12)(10)2(4⋅10⋅124)(4) topology.
Figure 9. (a) The coordination environment of the Co(II) ion in 8. Symmetry transformations used to generate equivalent atoms: (A) −x, −y + 2, −z + 2; (B) x, y, z – 1; (C) -x, −y + 1, −z + 1. (b) A drawing showing the (102⋅12)(10)2(4⋅10⋅124)(4) topology.
Molecules 28 02226 g009
Figure 10. Photodegradation rates of MB solution under UV irradiation.
Figure 10. Photodegradation rates of MB solution under UV irradiation.
Molecules 28 02226 g010
Table 1. Ligand conformations and bonding modes of 18.
Table 1. Ligand conformations and bonding modes of 18.
ConformationCoordination Mode
1Molecules 28 02226 i001
trans anti–anti
Molecules 28 02226 i002
trans anti–anti
Molecules 28 02226 i003
μ2-κO:κO′
2Molecules 28 02226 i004
trans anti–anti
Molecules 28 02226 i005
trans synsyn
Molecules 28 02226 i006
μ32O,O′:κO′′:κO′′′
3Molecules 28 02226 i007
trans antianti
Molecules 28 02226 i008
μ4-κ2O,O′:κO′′:κO′′′:κN
4Molecules 28 02226 i009
cis syn–syn
Molecules 28 02226 i010
μ2-κ2O,O′: κ2O′′,O′′′
5Molecules 28 02226 i011
trans antianti
Molecules 28 02226 i012
μ4-κO:κO′:κO′′:κO′′′
6Molecules 28 02226 i013
trans synsyn
Molecules 28 02226 i014
trans antianti
Molecules 28 02226 i015
μ2-κ2O,O′:κO′′
7Molecules 28 02226 i016
trans synsyn
Molecules 28 02226 i017
μ2-κ2O,O′: κ2O′′,O′′′
8Molecules 28 02226 i018
trans synanti
Molecules 28 02226 i019
cis anti–anti
Molecules 28 02226 i020
μ2-κO:κO′
Table 2. Crystallographic data for 18.
Table 2. Crystallographic data for 18.
Compound123
FormulaC32H34N4O8CoC28H25N5O10CoC19H18CoN3O6
Formula weight661.56650.46443.29
Crystal systemTriclinicTriclinicTriclinic
Space groupPīPīPī
a, Å10.3115(3)10.0958(2)8.3283(3)
b, Å11.9684(4)11.3920(3)10.0484(3)
c, Å13.2748(4)12.6159(3)11.3130(4)
α, °74.6853(9)73.5612(11)81.041(2)
β, °73.1745(9)84.2220(10)87.225(25)
γ, °73.1501(9)87.1266(11)82.0898(19)
V, Å31471.49(8)1384.23(6)925.94(5)
Z222
Dcalc, Mg/m31.4931.5611.590
F (000)690670456
µ (Mo Kα), mm−10.6440.6890.971
Range (2θ) for data collection, deg3.270 ≤ 2θ ≤ 56.8543.380 ≤ 2θ ≤ 56.6623.646 ≤ 2θ ≤ 56.688
Independent reflections7357
[R(int) = 0.0247]
6880
[R(int) = 0.0226]
4607
[R(int) = 0.0329]
Data/restraints/parameters7357/0/4066880/0/3974607/0/262
Quality-of-fit indicator c1.0351.0651.005
Final R indices
[I > 2σ(I)] a,b
R1 = 0.0303
wR2 = 0.0732
R1 = 0.0536
wR2 = 0.1556
R1 = 0.0378
wR2 = 0.0824
R indices (all data)R1 = 0.0369,
wR2 = 0.0762
R1 = 0.0656,
wR2 = 0.1659
R1 = 0.0548,
wR2 = 0.0895
Compound456
FormulaC35H32CoN4O8C24H19CoN2O8SC64H62Co2N8O19
Formula weight695.57554.401365.07
Crystal systemOrthorhombicTriclinicMonoclinic
Space groupIbcaPīP21/c
a, Å13.6153(3)9.1565(4)16.5329(3)
b, Å19.3800(5)10.9657(5)17.1867(3)
c, Å25.1236(6)13.2184(6)21.3467(4)
α, °9097.8126(15)90
β, °90109.4504(17)103.3525(9)
γ, °90104.9062(15).90
V, Å36629.2(3)1173.06(9)5901.61(19)
Z824
Dcalc, Mg/m31.3941.5701.536
F (000)28885682832
µ (Mo Kα), mm−10.5760.8740.649
Range (2θ) for data collection, deg3.242 ≤ 2θ ≤ 52.0003.962 ≤ 2θ ≤ 56.7143.076 ≤ 2θ ≤ 56.588
Independent reflections3267
[R(int) = 0.0767]
5836
[R(int) = 0.0234]
14613
[R(int) = 0.0466]
Data/restraints/parameters3267/1/2235836/0/33414613/0/841
Quality-of-fit indicator c1.0141.0671.060
Final R indices
[I > 2σ(I)] a,b
R1 = 0.0492,
wR2 = 0.1109
R1 = 0.0375,
wR2 = 0.1079
R1 = 0.0526,
wR2 = 0.1264
R indices (all data)R1 = 0.1309,
wR2 = 0.1409
R1 = 0.0493,
wR2 = 0.1155
R1 = 0.0892,
wR2 = 0.1448
Compound78
FormulaC32H30CdN4O9C64 H52Zn2N8O14
Formula weight727.001287.87
Crystal systemMonoclinicTriclinic
Space groupP21/cPī
a, Å16.9732(3)a = 12.8606(12)
b, Å9.4163(2)b = 13.1507(14)
c, Å20.7184(4)c = 18.7726(18)
α, °9090.177(6)
β, °114.0812(10)101.414(6)
γ, °90113.475(5)
V, Å33023.12(10)2842.7(5)
Z42
Dcalc, Mg/m31.5971.505
F(000)14801328
µ(Mo Kα), mm−10.7860.922
Range (2θ) for data collection, deg2.628 ≤ 2θ ≤ 56.6202.222 ≤ 2θ ≤ 56.840
Independent reflections7521
[R(int) = 0.0571]
14194
[R(int) = 0.0806]
Data/restraints/parameters7521/0/41914194/0/793
Quality-of-fit indicator c1.0091.004
Final R indices
[I > 2σ(I)] a,b
R1 = 0.0373,
wR2 = 0.0670
R1 = 0.0567,
wR2 = 0.1012
R indices (all data)R1 = 0.0672,
wR2 = 0.0763
R1 = 0.1485,
wR2 = 0.1265
a R1 = Fo − Fc/Fo. b wR2 = [w(Fo2 − Fc2)2/w(Fo2)2]1/2. w = 1/[σ2(Fo2) + (ap)2 + (bp)], p = [max(Fo2 or 0) + 2(Fc2)]/3. a = 0.0329, b = 0.9214, 1; a = 0.0873, b = 1.5032, 2; a = 0.0413, b = 0.5057, 3; a = 0.0644, b = 0.1557, 4; a = 0.0665, b = 0.5236, 5; a = 0.0590, b = 6.0526, 6; a = 0.0259, b = 1.0874, 7; a = 0.0475, b = 0.1495, 8. c quality-of-fit = [Σw(|Fo2| − |Fc2|)2]/(Nobserved − Nparameters)1/2.
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Govindaraj, M.; Zhong, S.-Y.; Lin, C.-H.; Chen, J.-D. Metal and Ligand Effect on the Structural Diversity of Divalent Coordination Polymers with Mixed Ligands: Evaluation for Photodegradation. Molecules 2023, 28, 2226. https://doi.org/10.3390/molecules28052226

AMA Style

Govindaraj M, Zhong S-Y, Lin C-H, Chen J-D. Metal and Ligand Effect on the Structural Diversity of Divalent Coordination Polymers with Mixed Ligands: Evaluation for Photodegradation. Molecules. 2023; 28(5):2226. https://doi.org/10.3390/molecules28052226

Chicago/Turabian Style

Govindaraj, Manivannan, Shih-Ying Zhong, Chia-Her Lin, and Jhy-Der Chen. 2023. "Metal and Ligand Effect on the Structural Diversity of Divalent Coordination Polymers with Mixed Ligands: Evaluation for Photodegradation" Molecules 28, no. 5: 2226. https://doi.org/10.3390/molecules28052226

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