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Article

Ion Mobility Mass Spectrometry Reveals Rare Sialylated Glycosphingolipid Structures in Human Cerebrospinal Fluid

by
Mirela Sarbu
1,2,
Dragana Fabris
3,
Željka Vukelić
3,
David E. Clemmer
4 and
Alina D. Zamfir
1,5,*
1
Department of Condensed Matter, National Institute for Research and Development in Electrochemistry and Condensed Matter, 300569 Timisoara, Romania
2
Department of Physics, West University of Timisoara, 300223 Timisoara, Romania
3
Department of Chemistry and Biochemistry, School of Medicine, University of Zagreb, 10000 Zagreb, Croatia
4
Department of Chemistry, Indiana University, Bloomington, IN 47405, USA
5
Department of Technical and Natural Sciences, ‘‘Aurel Vlaicu’’ University of Arad, 310330 Arad, Romania
*
Author to whom correspondence should be addressed.
Molecules 2022, 27(3), 743; https://doi.org/10.3390/molecules27030743
Submission received: 27 December 2021 / Revised: 17 January 2022 / Accepted: 19 January 2022 / Published: 24 January 2022
(This article belongs to the Special Issue Tandem Mass Spectrometry: Techniques and Applications)
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Versions Notes

Abstract

:
Gangliosides (GGs) represent an important class of biomolecules associated with the central nervous system (CNS). In view of their special role at a CNS level, GGs are valuable diagnostic markers and prospective therapeutic agents. By ion mobility separation mass spectrometry (IMS MS), recently implemented by us in the investigation of human CNS gangliosidome, we previously discovered a similarity between GG profiles in CSF and the brain. Based on these findings, we developed IMS tandem MS (MS/MS) to characterize rare human CSF glycoforms, with a potential biomarker role. To investigate the oligosaccharide and ceramide structures, the ions detected following IMS MS separation were submitted to structural analysis by collision-induced dissociation (CID) MS/MS in the transfer cell. The IMS evidence on only one mobility feature, together with the diagnostic fragment ions, allowed the unequivocal identification of isomers in the CSF. Hence, by IMS MS/MS, GalNAc-GD1c(d18:1/18:1) and GalNAc-GD1c(d18:1/18:0) having both Neu5Ac residues and GalNAc attached to the external galactose were for the first time discovered and structurally characterized. The present results demonstrate the high potential of IMS MS/MS for biomarker discovery and characterization in body fluids, and the perspectives of method implementation in clinical analyses targeting the early diagnosis of CNS diseases through molecular fingerprints.

1. Introduction

Glycosphingolipids (GSLs), comprising a ceramide backbone linked by a β-glycosidic bond to complex glycans, are located in the outer leaflet of the mammals, plants and bacteria plasma membrane [1]. The central nervous system (CNS) is abundant in acidic GSLs, such as sialic acid-containing GSLs (gangliosides, GGs) and sulfate-containing GSLs (sulfoglycolipids) [2]. These two classes of molecules are involved in neurodevelopment, neural cell recognition and cell–cell adhesion [1]. As constituents of cell membrane microdomains, GGs contribute to extracellular biologic events, such as the modulation of membrane proteins and ion channels, cell–cell recognition, adhesion, cellular differentiation, growth and intra- and intercellular signaling [3,4,5]. Loss-of-function mutations in GG biosynthetic enzymes cause severe neurodegenerative disorders [3,6,7,8,9]; alterations in the composition and concentration of particular GGs might also occur with aging [10,11,12] and in common neurodegenerative conditions, such as Huntington’s disease, Alzheimer’s disease, Parkinson’s disease, amyotrophic lateral sclerosis, stroke, multiple sclerosis and epilepsy [13,14]. Therefore, GGs are not only markers for cells at certain developmental stages, but also prone to become targets of disease-associated antibodies [1].
Cerebrospinal fluid (CSF), a clear, colorless plasma-like fluid, located within the subarachnoid space that bathes the CNS and can be collected through lumbar puncture, represents nowadays a body fluid whose examination gained more interest for clinical diagnosis of a wide range of CNS diseases that otherwise would be difficult to diagnose. Since, in adults, there is a daily secretion of 400–600 mL of CSF with an unchanged composition, which upholds a stable intraventricular environment in the brain, essential for maintaining normal neural functions [15], CSF is renewed four to five times daily. Hence, any disease of CNS leads to alterations in the normal appearance and composition of the CSF. Autoimmune diseases [16,17,18], primary or metastatic cancers [19,20,21], any hemorrhage in or around the brain [22], Alzheimer’s disease [23,24,25] and infectious diseases, such as meningitis [26] and encephalitis [27,28], are some of the CNS conditions that can be diagnosed by the appearance, cytology and evaluation of the level or concentration of different components in CSF.
Whereas GGs are released into the intercellular space through the normal cell-membrane turnover, known as “cell surface shedding” [29], and the intercellular space in the brain communicates with the CSF, the GG rate of release is reflected in the concentration of GGs in the CSF [30,31]. Furthermore, altered concentrations of GGs in the CSF could reflect an abnormal nerve-cell turnover, including the abnormal turnover of synapses [32].
Although CSF sampling is more difficult than urine or blood, as CSF is in direct contact with the brain and spine, CSF testing is more effective in diagnosing a variety of CNS conditions. While the human brain, in particular the cerebral cortex, is characterized by a GG concentration of about 3000–3500 nM NeuAc/g of fresh tissue [3], the GG content in CSF is greatly reduced, up to only 0.3–0.5 nM NeuAc/mL [31,33] and an average of 92 nM of the four main brain GGs (GM1, GD1a, GD1b and GT1b) (Scheme 1) [34]. Thus, the extraction, quantification and analysis of GGs in CSF require high performance techniques, characterized by elevated sensitivity and resolution.
Ion mobility separation mass spectrometry (IMS MS) has emerged as a powerful and ultrafast technique, able to provide an excellent and reproducible separation based on the dissimilarities in the collision cross section and charge as the ions pass through a buffer gas under an electric field [35,36,37,38]. In recent years, the method has gained in popularity in the glycolipidomic field and related clinical assays [39,40,41], mainly because IMS (i) is not a stand-alone instrument, being incorporated within the MS instrument; (ii) does not imply special solvents or complicated sample preparation procedures prior to mass analysis; (iii) allows the real-time separations and characterization of highly complex mixtures; (iv) offers information of possible glycolipid isomers, isobars and conformers in biological mixture; (v) allows the detection and identification of low abundant ions, indistinguishable solely by MS; and vi) can function properly for high-throughput analyses.
In glycosphingolipidomics, the exhaustive separation of the molecules according to the mass-to-charge ratio, charge state, carbohydrate chain length, the sialylation degree and ceramide composition, as revealed by the published IMS MS literature [11,42,43,44,45], allowed the identification of novel structures, characterized by a higher degree of sialylation and diversity of the ceramide composition. Recently, IMS MS implemented by us in the investigation of human CSF gangliosidome in a pilot study [46], offered a first overview on the GG pattern and highlighted the incidence of a similar GG profile in human CSF and brain. Given the valuable data provided by IMS MS for CSF, a detailed evaluation of the GG profile in CSF revealed the presence of new and biologically relevant species. Hence, in the current study, we explored the incidence of potential biomarkers belonging to the disialoganglioside class with the longest glycan chain (GD1) and exhibiting elongated structures present in the normal lumbar human CSF. Such species, previously detected in the human brain and serum [47,48,49,50,51,52,53,54], were not structurally investigated. The prevalence of GalNAc-GD1 glycoforms in CSF, thoroughly characterized by collision-induced dissociation (CID) MS/MS, documents the shedding of glycolipids from the brain into CSF.
In view of the (i) permanent renewal of CSF; (ii) limited access to brain biopsies or tumor tissue samples; (iii) vital role played by GGs in neurodevelopment; (iv) drastically reduced GG content in CSF compared to human brain; (v) previous observations related to the similarity of GG content in CSF and brain and (vi) detection, identification and structural characterization by IMS CID MS/MS of biologically relevant molecules of lower expression, IMS MS approach generated here data useful for early diagnosis of CNS conditions. Based on the discovered GG molecular fingerprints, a systematic assessment of either biochemical changes occurring with disease progression/regression or the follow-up treatment might also be possible.

2. Results

2.1. IMS MS Screening

Ten μL of purified native CSF ganglioside mixture dissolved in methanol at a concentration of 5 pmol/µL was infused into Synapt G2S and analyzed in negative ion mode nanoESI IMS MS. As previously reported for this type of molecule [11,42,43,46], IMS separates on a millisecond time-scale the GG species into mobility groups, based on the charge state, carbohydrate and ceramide chain lengths and degree of sialylation. This is a major advantage, as it allows (i) the detection of a larger number of species, including those of low abundance, which could not be detected based solely on m/z separation, and (ii) the extraction and processing only of the data of interest, such as the GD1 species investigated here in more detail, by retaining the relevant drift time and combining the chromatogram.
Hence, the mass spectrum and the 2D DriftScope plot (m/z vs. drift time) of the doubly charged GD1 class in methanol, generated after 2 min of signal acquisition, is depicted in Figure 1. A closer inspection of Figure 1 reveals the incidence of 14 different GD1 species. As observed from both the MS and the DriftScope presented as an inset in Figure 1, the most abundant ions at m/z 917.474 and m/z 931.493 correspond to two species encompassing the most common ceramides: GD1(d18:1/18:0) and GD1(d18:1/20:0), respectively. However, fatty acids with chain lengths from 16 up to 24 carbon atoms in their composition were observed as well. The ion at m/z 925.475, shifted with 16 amu with respect to the base peak, could arise from either the GD1(t18:1/18:0) or the GD1(d18:1/h18:0) molecular species. In addition to the diversity of the ceramide chains, the prevalence of biologically-relevant modifications, such as O-fucosylation, commonly found in the human brain [11,42,43], was observed as well. Fuc-GD1(d18:1/18:2) and Fuc-GD1(d18:1/18:1) previously detected both in the human brain [11,12,54] and CSF [46] were found here at m/z 988.488 and m/z 989.495, respectively, at sufficient abundances for their straightforward assignment.
Of particular importance are the doubly charged ions at m/z 1018.004 and m/z 1019.008 assigned, according to mass calculation, to GalNAc-GD1(d18:1/18:1) and GalNAc-GD1(d18:1/18:0). Whereas the GalNAc-GD1a isomer was associated with the pure motor variant of Guillain–Barré syndrome [47,48,49,50], GalNAc-GD1c-like lipo-oligosaccharides were detected in C. jejuni isolates from Fisher syndrome patients one decade ago [51], but not associated with the disorder. SinceMS1 was unable to reveal data related to the molecular structure, the ion at m/z 1019.008 was selected and submitted to further structural investigation using collision-induced dissociation at low collision energies in order to elucidate its molecular architecture.

2.2. Structural Elucidation by IMS CID MS/MS of Uncommon Glycoforms

IMS MS demonstrated the occurrence in CSF of elongated glycoforms, such as GalNAc-GD1, a minor GG specific to the human brain and peripheral nerve [49,52,53]. Such an example is the ion detected at m/z 1019.006 in Figure 1 and assigned, according to mass calculation, to the doubly deprotonated GalNAc-GD1(d18:1/18:0). This species was previously found in normal human adult cerebellum tissue [54] using automated chip-based nanoelectrospray high resolution MS, but not structurally characterized. Hence, we have isolated the ion by setting LM and HM to 15, and submitted it to low energy CID MS/MS in the negative ion mode for a detailed investigation of the oligosaccharide and ceramide structures. Data upon the localization of Neu5Ac residues essentially for isomer identification from the six possible structures illustrated in Scheme 2 that might be present in CSF were collected as well.
The fragmentation spectrum of the [M − 2H]2- detected at m/z 1019.006, generated by combining the total ion chromatogram, acquired for 3 min under variable collision energy within 30–40 eV range, is depicted in Figure 2, together with its single mobility feature at 6.73 ms (Inset Figure 2), which substantiates the occurrence of a single isomer. The assignment of the detected fragment ions in the spectrum in Figure 2 is presented in Table 1.
Considering the isolation window of one m/z unit for this parent ion, the fragment ions of the GalNAc-GD1(d18:1/18:1) species, with an additional double bond in the composition of the fatty acid, detected at m/z 1018.004 in Figure 1, selected and fragmented in parallel with its analogue, were also observed and designated with asterisk in Table 1.
The abundant B1α and C1α ions detected at m/z 290.079 and m/z 308.099 generated following the detachment of one Neu5Ac residue from the parent ion, document the sialylation status of the molecule. B1β or Y3/Y2 at m/z 202.064 and C1β or Y3/Z2 at m/z 220.072, respectively, are diagnostic for the GalNAc fragment. The following sequence ions detected as B3/B2α, B4/B2α, C3/B1α or Y4β/B1α/Z2, B4/B1α and C4/B1α at m/z 364.068, m/z 567.113, m/z 673.244, m/z 858.289 and m/z 876.308, respectively, along with the above-mentioned fragment ions document together the structure of the non-reducing end.
On the other hand, Y0 at m/z 564.533 together with Z0 at m/z 546.541 and U at m/z 283.262 corresponding to the C18:0 fatty acid, validate (d18:1/18:0) ceramide composition, while Y0* at m/z 562.522 and U* at m/z 281.243 are indicative ofthe C18:1 fatty acid belonging to the GalNAc-GD1(d18:1/18:1) species, selected and fragmented simultaneously.
The fragment ions produced by the loss of one or both Neu5Ac and/or GalNAc residues from the precursor ions were also detected in the mass spectrum in Figure 2. Hence, the ions Y5α at m/z 873.463 and m/z 1747.945; Y4α at m/z 1456.855; Z4β at m/z 908.365; Y4β at m/z 917.475; Y4β/C1α at m/z 1526.850; Y4β/B1α at m/z 1544.868 and Y4β/B2α at m/z 1253.750 are specific to the structure encompassing the (d18:1/18:0) ceramide composition. The ions at m/z 1745.889, m/z 1454.748, m/z 907.339, m/z 916.466 and m/z 1542.848, assigned to Y5α*, Y4α*, Z4β*, Y4β* and Y4β*/B1α are diagnostic for the species with an additional double bond in the composition of the fatty acid chain.
Considering the Gal-GalNAc-Gal chain symmetry of the sugar core, and the possibility of the additional GalNAc and Neu5Ac residue attachment at any of the two Gal units, there are, theoretically, six possible structural candidates for the GalNAc-GD1(d18:1/18:0) formula, as illustrated in Scheme 2. The ion at m/z 552.594 formed by double bond and internal cross-ring cleavages and assigned to B3/B1α/2,5A1β might arise only from the first five (A–E) candidates depicted in Scheme 2. Moreover, the ions at m/z 858.289 and m/z 876.308, corresponding to the Neu5Ac-(GalNAc)-Gal-GalNAc sequence are possible only for the (A), (C), (D) and (E) candidates. Consequently, only these four possible structural candidates from Scheme 2 were further considered.
According to mass calculation, the ion at m/z 458.569 arising upon the cross-ring cleavage of a Gal unit and corresponding to the Neu5Ac2-GalNAc-Gal structure is a fragment ion supporting the incidence of the disialo element. More importantly, in view of the GalNAc (β1-4) Gal, GalNAc (β1-3) Gal or GalNAc (β1-6) Gal linkage possibilities, the fragment ions at m/z 539.592 and m/z 1064.376 assigned to 1,5A4/B2α and C4/2,5A1β, together with the previously mentioned ones, are relevant for the attachment of the disialo element and the additional GalNAc residue to the external Gal residue. Therefore, these fragment ions support a structural motif consistent with the (D) candidate. The scheme depicting the fragmentation pathway experienced by the precursor ion during the dissociation event is provided in Figure 3.
Consequently, GalNAc-GD1c(d18:1/18:1) and GalNAc-GD1c(d18:1/18:0) are uncommon isomers, having both sialic acids and GalNAc attached to the external galactose unit were for the first time evidenced here in CSF and structurally characterized in detail.

3. Materials and Methods

3.1. Cerebrospinal Fluid Sampling

The investigation of lumbar CSF, sampled from adults exhibiting no signs of tumors, demyelination, intracranial hemorrhage, congenital errors of lipid metabolism or acute inflammatory process of the CNS, was carried out in order to exclude meningitis associated with the patients, through a meningitis epidemic episode. The lumbar puncture was not performed solely for ganglioside research. Approximately 1 mL of CSF was collected as a residual volume after clinical analysis from each individual patient diagnosed as healthy. A total of 21 mL of CSF was pooled and provided for scientific purposes. The CSFs were sampled by the Clinical Hospital Centre Zagreb, Department for General Clinical Biochemistry and Diagnostics of CSF, Croatia. Permission for the experiments with human material for scientific purposes was obtained from the Ethical Commission of the University of Zagreb, Croatia, under project no. 108120 by the Ministry of Science and Technology of the Republic of Croatia. All procedures on the human tissue and/or human body fluids were in agreement with the 1964 Helsinki Declaration and its later amendments. Subsequent to the biochemical examinations and prior ganglioside extraction, a CSF sample was centrifuged for 10 min at 6000 rpm in a mini-centrifuge (Thermo Fisher Scientific, U.S.A.) and the supernatant was collected.

3.2. Gangliosides Extraction and Purification

The extraction and purification of the CSF GG mixture followed the method developed by Svennerholm and Fredman [55], as modified by Vukelić et al. [56] and the procedures previously described [46]. Briefly, the CSF sample was treated as a corresponding water homogenate in the extraction procedure. Lipid extraction was performed twice using a chloroform–methanol–water mixture (1:2:0.75, by vol.). In order to separate the GGs from the other lipids, a phase partition followed by repartition was carried out by adding to the combined supernatant resulted after centrifugation of the chloroform, methanol and water up to a final volume ratio of 1:1:0.8. The combined upper phases containing polar glycosphingolipids (gangliosides) were collected. The crude GG extract was purified in several steps, as previously described by us [46]. The GG extract was dissolved in pure methanol and an aliquot was diluted in methanol to prepare a stock solution of 0.5 µg/mL (corresponding to approximately 700 µL of CSF). Prior to the experiments, the stock solution was stored at −40 °C.

3.3. Ion Mobility Mass Spectrometry

A Synapt G2S mass spectrometer (Waters, Manchester, U.K.) equipped with a nanoESI source was used for conducting the ion mobility mass spectrometry experiments in negative ion mode. The instrument was interfaced to a PC computer running the Waters MassLynx (version V4.1, SCN 855) and Waters Driftscope (version V2.7) software for data acquisition and IMS data processing.
The 10 cm long capillaries of uncoated borosilicate glass (ID: 1.2 mm, OD: 1.5 mm; Sutter Instrument Co., Novato, CA) were pulled with a Sutter p-97 micropipette puller to produce electrospray capillaries with 10 µm tip sizes and taper lengths of 4 mm. Ten µL of the CSF solution in methanol at 5 pmol/µL GG concentration was introduced into the back of a pulled emitter and a 0.25 mm platinum wire was inserted into the solution. All mass spectra (MS and MS/MS) were acquired in the negative ion mode, within the mass range of 100–2500 m/z, with a speed of 1 scan/s. The voltage applied to the platinum wire and the cone was carefully tuned to attain an efficient ionization of the components and a reduced in-source fragmentation. Hence, a constant spray was obtained at 1.6 kV and 45 V potential for the capillary and cone, respectively, while other parameters were set as follows: source block temperature 100 °C, desolvation gas flow rate 800 L/h and desolvation temperature 150°C. The low-mass (LM) and high-mass (HM) resolution parameters were set at 18 and 16, respectively, for the MS experiments, while for the CID MS/MS experiments, both were set at 15. To enhance the GG separation, the IMS parameters were thoroughly optimized as follows: wave velocity at 650 m/s, IMS wave height at 40 V and IMS gas flow at 90 L/min. These values provided the greatest separation of both the molecular ions in the mixture screened in the MS mode, and the mass-selected ions in the quadrupole submitted further to the CID MS/MS. The fragmentation experiments, using collision energies between 30 and 40 eV, were carried out in the transfer cell, placed after the mobility cell, as the discrimination of the parent ion isomers, if present, was provided.

3.4. Ganglioside Abbreviation and Assignment of the Spectra

The abbreviation of II3-α-(Neu5Ac)2-Gg4Cer as GD1 was according to the system of Svennerholm [57] and the recommendations of the IUPAC-IUB Commission on Biochemical Nomenclature (IUPAC-IUB 1998) [58]. The assignment of oligosaccharide sequence ions generated following the fragmentation experiment followed the generally accepted nomenclature introduced by Domon and Costello [59] and revised by Costello et al. [60]. Ceramide fragment ions were assigned according to the nomenclature of Ann and Adams [61] and based on the previously acquired knowledge on the structure of GGs in human CNS [44,46,62,63,64,65].

4. Conclusions

The results of the current study illustrate that ion mobility separation mass spectrometry is a powerful and extremely proficient technique capable of unambiguously identifying and structurally characterizing GG species having a low expression in the human CSF, but with a potential biomarker role. Ganglioside separation, according to their mobility through a buffer gas, directly influenced by the charge state, m/z ratio, carbohydrate and ceramide chain lengths and degree of sialylation, allowed for the identification for the first time in human CSF of rare structures exhibiting elongated glycan chains. The possibility to extract and retain the drift times for narrow regions of the 2D plot corresponding to the areas of interest also significantly contributed to the comprehensive mapping of the GGs in CSF. GalNAc-GD1(d18:1/18:0), a newly discovered species in CSF, detected as a low intensity ion, was submitted to structural characterization by CID MS/MS.
Each sequencing method applied to the structural analysis of glycans and glycoconjugates, whether it is the fragmentation of their native or permethylated forms by MSn, the digestion of the glycan chain by the use of glycosidases or the tandem MS performed after a proficient separation technique, exhibits both advantages and disadvantages. For certain studies, some methods are more suitable than others. The aim of the present work was to discover and characterize rare GG species in human CSF and highlight the major benefits for this purpose of a rigorously optimized IMS MS/MS approach.
This work emphasized not only the data consistency but also the analysis speed and the high reproducibility and sensitivity provided by IMS MS/MS. The latter parameters are crucial in such studies since clinical extracts are only available for research in limited amounts. Thus, for an identical instrumental setup and tuning, the current approach, based on a single run and on a single instrument, provided 100% in-run, about 98% run-to-run and 95% day-to-day reproducibility of the results, for a number of three replicates. In terms of sensitivity, for the sample concentration of 5 pmol/μL, 2 min signal acquisition for IMS screening and 3 min for structural characterization by CID MS/MS, are equivalent with a consumption of 2 μL for the entire study, which correspond to only 10 pmols of CSF GGs.
Unlike the methods based on the enzymatic fragmentation of the glycan chain, no post-digestion purification steps, which often result in potential sample loss, were necessary. Through the fragment ions generated by the cleavage of the glycosidic bonds and the cross-ring cleavages, IMS CID MS/MS can offer the information necessary to deduce the structure of the oligosaccharide chain and the ceramide for single GG components in complex mixtures.
While the incidence of a single mobility feature for the parent ion disclosed the existence of a single structural conformation, the optimized fragmentation conditions induced efficient ion dissociation with high sequence coverage. No less than 37 diagnostic fragment ions for GalNAc-GD1(d18:1/18:0) were generated, of which, 6 served for the unequivocal determination of the isomers present in CSF. Hence, GalNAc-GD1c(d18:1/18:1) and GalNAc-GD1c(d18:1/18:0) having both sialic acids and GalNAc attached to the external galactose unit were for the first time found in CSF and structurally characterized.
The current data substantiate the high efficiency of IMS MS and CID MS/MS techniques in revealing rare GG components and deciphering structural isomers in body fluids, where such species have a few times lower expression than in neural tissue. Such findings are of primary importance in relation to the future applicability of IMS MS in early diagnostic of CNS diseases, based on the discovery of biomarkers in CSF or blood/serum.

Author Contributions

MS experiments, data interpretation and writing of the manuscript, M.S.; sampling of CSF, extraction and purification of gangliosides and data interpretation, D.F. and Ž.V.; project supervision and writing of the manuscript, D.E.C. and A.D.Z. All authors have read and agreed to the published version of the manuscript.

Funding

This project was supported by the Romanian National Authority for Scientific Research, UEFISCDI, through projects PN-III-P2-2.1-PED-2019-0799 and PN-III-P4-ID-PCE-2020-0209 granted to A.D.Z. and project PN-III-P1-1.1-PD-2019-0226 granted to M.S.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Informed consent was obtained from all subjects involved in the study.

Conflicts of Interest

The authors declare no conflict of interest.

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Molecules 27 00743 sch001 550
Scheme 1. Biosynthesis pathway of the main brain gangliosides.
Scheme 1. Biosynthesis pathway of the main brain gangliosides.
Molecules 27 00743 sch001
Molecules 27 00743 g001 550
Figure 1. Combined (-) nanoESI IMS MS of doubly deprotonated GD1 species from the extracted drift time corresponding to the GD1 class in the CSF sample. Inset: Driftscope display (drift time vs. m/z) of the doubly charged GD1 class.
Figure 1. Combined (-) nanoESI IMS MS of doubly deprotonated GD1 species from the extracted drift time corresponding to the GD1 class in the CSF sample. Inset: Driftscope display (drift time vs. m/z) of the doubly charged GD1 class.
Molecules 27 00743 g001
Molecules 27 00743 sch002 550
Scheme 2. Possible candidate isomers for the GalNAc-GD1(d18:1/18:0) molecular form.
Scheme 2. Possible candidate isomers for the GalNAc-GD1(d18:1/18:0) molecular form.
Molecules 27 00743 sch002
Molecules 27 00743 g002 550
Figure 2. (-) nanoESI IMS CID MS/MS of the [M − 2H]2- at m/z 1019.006 corresponding to the GalNAc-GD1(d18:1/18:0) species isolated and fragmented from CSF sample. Inset: drift time distribution for the ion at m/z 1019.006 fragmented by CID. Cone voltage 45 V. Capillary voltage 1.6 kV. Acquisition 180 scans. CID at variable collision energy within 30–40 eV.
Figure 2. (-) nanoESI IMS CID MS/MS of the [M − 2H]2- at m/z 1019.006 corresponding to the GalNAc-GD1(d18:1/18:0) species isolated and fragmented from CSF sample. Inset: drift time distribution for the ion at m/z 1019.006 fragmented by CID. Cone voltage 45 V. Capillary voltage 1.6 kV. Acquisition 180 scans. CID at variable collision energy within 30–40 eV.
Molecules 27 00743 g002
Molecules 27 00743 g003 550
Figure 3. Fragmentation scheme of GalNAc-GD1(d18:1/18:0).
Figure 3. Fragmentation scheme of GalNAc-GD1(d18:1/18:0).
Molecules 27 00743 g003
Table
Table 1. Assignment of the fragment ions originating from m/z 1019.006 and m/z 1018.002 corresponding to the GalNAc-GD1(d18:1/18:0) and GalNAc-GD1(d18:1/18:1) (denoted by asterisk *) species isolated from the CSF sample and fragmented by (-) nanoESI IMS CID MS/MS.
Table 1. Assignment of the fragment ions originating from m/z 1019.006 and m/z 1018.002 corresponding to the GalNAc-GD1(d18:1/18:0) and GalNAc-GD1(d18:1/18:1) (denoted by asterisk *) species isolated from the CSF sample and fragmented by (-) nanoESI IMS CID MS/MS.
m/zCharge StateType of Fragment Ion
161.0321-Y4β/Y3/B2α or Y2/Y1 or Y1/Y0
179.0431-Y4β/Z3/B2α or Y2/Z1 or Y1/Z0
202.0641-B1β or Y3/Y2
220.0721-C1β or Y3/Z2
281.2431-U*
283.2621-U
290.0791-B1α
308.0991-C1α
364.0681-B3/ B2α
386.9831-2,4X0/U
458.5692-1,5A3
539.5921-1,5A4/B2α
546.5411-Z0
552.5941-B3/B1α/2,5A1β
562.5221-Y0*
564.5331-Y0
567.1131-B4/B2α
673.2441-C3/B1α or Y4β/B1α/Z2
708.4961-Z1
724.5781-Y1*
726.5871-Y1
858.2891-B4/B1α
873.4632-Y5α
876.3081-C4/B1α
888.6321-Y2
895.4802-Y4β/CH3CHO
907.3392-Z4β*
908.3652-Z4β
916.4662-Y4β*
917.4752-Y4β
931.4602-3,5A1α
995.9722-M/*CH3CHO
996.9962-M/CH3CHO
1018.0022-[M* − 2H]2-
1019.0062-[M − 2H]2-
1038.3681-C5/B1α
1064.3761-C4/2,5A1β
1089.7071-Y3*
1091.7161-Y3
1253.7501-Y4β/B2α
1454.7481-Y4α*
1456.8551-Y4α
1526.8501-Y4β/C1α
1542.8481-Y4β*/B1α
1544.8681-Y4β/B1α
1745.8891-Y5α*
1747.9451-Y5α
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Sarbu, M.; Fabris, D.; Vukelić, Ž.; Clemmer, D.E.; Zamfir, A.D. Ion Mobility Mass Spectrometry Reveals Rare Sialylated Glycosphingolipid Structures in Human Cerebrospinal Fluid. Molecules 2022, 27, 743. https://doi.org/10.3390/molecules27030743

AMA Style

Sarbu M, Fabris D, Vukelić Ž, Clemmer DE, Zamfir AD. Ion Mobility Mass Spectrometry Reveals Rare Sialylated Glycosphingolipid Structures in Human Cerebrospinal Fluid. Molecules. 2022; 27(3):743. https://doi.org/10.3390/molecules27030743

Chicago/Turabian Style

Sarbu, Mirela, Dragana Fabris, Željka Vukelić, David E. Clemmer, and Alina D. Zamfir. 2022. "Ion Mobility Mass Spectrometry Reveals Rare Sialylated Glycosphingolipid Structures in Human Cerebrospinal Fluid" Molecules 27, no. 3: 743. https://doi.org/10.3390/molecules27030743

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