Special Issues

Microorganisms publishes Special Issues to create collections of papers on specific topics, with the aim of building a community of authors and readers to discuss the latest research and develop new ideas and research directions. Special Issues are led by Guest Editors, who are experts on the topic. The journal’s Editor-in-Chief and/or designated EBM will oversee Guest Editor appointments and Special Issue proposals, checking their content for relevance and ensuring the suitability of the material for the journal. The papers published in a Special Issue will be collected and displayed on a dedicated page of the journal’s website. For any inquiries related to a Special Issue, please contact the Editorial Office.

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Omics Research in Microbial Ecology
edited by and Natalia Gogoleva
submission deadline 31 May 2024 | 1 articles | Viewed by 2707 | Submission Open
Keywords: microbial ecology; omics technology; omics data; microbiome; microbial communities; microbial symbioses; genomics; transcriptomics; metagenomics; proteomics; metabolomics; host-associated microbial community; water microorganisms; soil microorganisms; microbes associated with plants; microbes associated with animals; bacteria; archaea; fungi; algae; protists; viruses
(This special issue belongs to the Section Systems Microbiology)
Advanced Research on Biological Control of Plant Disease or Microbial Interactions 2.0
edited by and
submission deadline 31 May 2024 | 3 articles | Viewed by 2488 | Submission Open
(This special issue belongs to the Section Plant Microbe Interactions)
Yeasts Biochemistry and Biotechnology, 2nd Edition submission deadline 31 May 2024 | 2 articles | Viewed by 2376 | Submission Open
Keywords: yeast; eukaryote model; biotechnology; recombinant protein; bioproduction; protein engineering
(This special issue belongs to the Section Microbial Biotechnology)
New Advances in Functional Ingredients’ Development to Improve Physiological and Functional Properties of Probiotics
edited by , and
submission deadline 31 May 2024 | 1 articles | Viewed by 2281 | Submission Open
Keywords: bioactive compounds; encapsulation; probiotics
(This special issue belongs to the Section Microbial Biotechnology)
Microorganisms in Functional Foods
edited by
submission deadline 31 May 2024 | 1 articles | Viewed by 2192 | Submission Open
Keywords: functional food; probiotics; prebiotics; fermentation; food microbiology; health promotion; gut diversity
(This special issue belongs to the Section Food Microbiology)
Advances in Epidemiology and Modeling submission deadline 31 May 2024 | Viewed by 937 | Submission Open
Keywords: spatial modeling; disease ecology; metapopulation; predictive modeling; emerging epidemics; sociodemography; mechanistic model; public health data; optimal control; artificial intelligence
(This special issue belongs to the Section Public Health Microbiology)
Antimicrobial Resistance: Challenges and Innovative Solutions submission deadline 31 May 2024 | 1 articles | Viewed by 902 | Submission Open
Keywords: antimicrobial resistance; mechanisms of resistance; therapeutic approaches; antimicrobial stewardship; infection control; public health
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
Effects of Probiotics on Health, 2nd Edition
edited by
submission deadline 31 May 2024 | 1 articles | Viewed by 806 | Submission Open
Keywords: probiotics; postbiotics; taxonomy; genomics; proteomics; metabolomics; microbiome; immunity; tissue; animals
(This special issue belongs to the Section Food Microbiology)
Microbial Communities in Aquatic Environments
edited by
submission deadline 31 May 2024 | 1 articles | Viewed by 771 | Submission Open
Keywords: microbial communities; aquatic environments; diversity; ecological roles; biogeochemical processes; anthropogenic influences; ecosystem resilience; nutrient cycling; climate variations; conservation strategies
(This special issue belongs to the Section Environmental Microbiology)
The Pathogenesis, Epidemiology and Diagnosis of Infectious Diseases in Livestock Animals
edited by and Fabiano José Ferreira De Sant'Ana
submission deadline 31 May 2024 | 1 articles | Viewed by 763 | Submission Open
Keywords: pathogenesis; epidemiology; diagnosis; livestock animals; infectious diseases
(This special issue belongs to the Section Veterinary Microbiology)
Phytoplankton Ecology and Harmful Algal Bloom Surveillance in Marine Ecosystems
edited by and Rosa I. Figueroa
submission deadline 31 May 2024 | Viewed by 289 | Submission Open
Keywords: Harmful Algal Blooms (HAB); HAB dynamics; ecology; coastal oceanography; climate change; physiological responses; species-specific responses; taxonomic and molecular characterization; monitoring programs; marine phycotoxins; toxins bioaccumulation; biotoxin blooms; high-biomass blooms; fish-killing blooms; control and mitigation tools; socioeconomic impacts
(This special issue belongs to the Section Environmental Microbiology)
Polymyxin Resistance in Gram-Negative Bacteria
edited by Sophia Vourli
submission deadline 31 May 2024 | Viewed by 273 | Submission Open
Keywords: multi-drug resistance; polymyxins PK/PD; combination therapy; mcr genes; One Health
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
Development of Nanomaterials for Antimicrobial Applications
edited by
submission deadline 31 May 2024 | Viewed by 262 | Submission Open
Keywords: antimicrobial properties; nanomaterials; nanoparticles; antibiotics; pathogens of antimicrobial agents
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
Microbiology of the Grape-Wine System submission deadline 31 May 2024 | Viewed by 230 | Submission Open
Keywords: yeasts; bacteria; wine; grapevine; viticulture; microbial terroir; microbial ecology; metagenomics; metabolomics; microbial biogeography; microbiome; microbial communities; microbial interactions; plant– microbe interactions; winemaking
(This special issue belongs to the Section Food Microbiology)
New Trends in the Use of Microorganisms for Wastewater Treatment and Reuse submission deadline 31 May 2024 | Viewed by 190 | Submission Open
Keywords: wastewater treatment; toxic compounds; bioremediation; biological processes; degradation pathways; green biotechnology; environmental engineering
(This special issue belongs to the Section Environmental Microbiology)
Environmental Sustainability Derived from Microorganisms: Bioresource Production and Recovery
edited by Hayden Webb
submission deadline 31 May 2024 | Viewed by 184 | Submission Open
Keywords: waste management; bioresource production; environmental sustainability; microorganisms bioresource recovery
(This special issue belongs to the Section Microbial Biotechnology)
Sepsis: Underlying Mechanisms, Pathogen-Host Interactions, Precision Diagnostic, Therapeutic Approaches, and Supportive Management
edited by Kenneth Remy
submission deadline 31 May 2024 | Viewed by 144 | Submission Open
Keywords: sepsis; hematology; immunology; personalized treatment; pathophysiology
(This special issue belongs to the Section Medical Microbiology)
Gene Expression Profiling in Leishmania: From Basic Research to Vaccines and Drug Targets
edited by and Ana M. Alonso
submission deadline 31 May 2024 | Viewed by 128 | Submission Open
Keywords: Leishmania spp.; genomics; transcriptomics; proteomics; promastigotes; amastigotes; extracellular vesicles; vaccine candidates; drug target candidates; meta-analysis
(This special issue belongs to the Section Parasitology)
Microbial Biostimulants: From the Lab to the Field for a New Agriculture 3.0
edited by
submission deadline 31 May 2024 | Viewed by 123 | Submission Open
Keywords: microorganisms; plant biostimulants; plant health promoters; agricultural; production; biofertilizer
(This special issue belongs to the Section Plant Microbe Interactions)
Cold-Adapted Bacteria and Marine Bacteria
edited by
submission deadline 31 May 2024 | Viewed by 98 | Submission Open
Keywords: cold-adapted enzyme; cold-adapted bacteria; marine bacteria; white biotechnologies; enzyme catalysis; microbial catalysis; food biotechnologies; environmental biotechnologies; detergent industry; cleaning industry; biofuels; molecular biology; recombinant protein production; pharmaceutical industry; structural biology
(This special issue belongs to the Section Microbial Biotechnology)
Emerging Pathogens Causing Acute Hepatitis submission deadline 15 Jun 2024 | 7 articles | Viewed by 13218 | Submission Open
(This special issue belongs to the Section Medical Microbiology)
Microbial Infections and Rheumatic Diseases
edited by and Jacopo Angelini
submission deadline 15 Jun 2024 | 3 articles | Viewed by 5662 | Submission Open
Keywords: rheumatic diseases; microorganisms; host– pathogen interaction; dysbiosis; antibiotics; prebiotics; probiotics; vaccines; biomarkers; drug– drug interaction
(This special issue belongs to the Section Medical Microbiology)
Antimicrobial Resistance and Multidrug-Resistant Bacteria in Infectious Patients
edited by , Antonio Parisi, Patrizia Nardulli and Maria Rita Laforgia
submission deadline 15 Jun 2024 | 4 articles | Viewed by 5305 | Submission Open
Keywords: diffusion multi-drug resistant bacteria; outbreak by ESKAPE bacteria; hospital infections; care-related infections; anti-microbial nano-particles; role of antimicrobial nanomaterials in medicine; mechanism of action of antimicrobial nanomaterials; antimicrobial food packaging
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
Advances in Soil Microbial Ecology
edited by Jie Wang and
submission deadline 15 Jun 2024 | 5 articles | Viewed by 3955 | Submission Open
Keywords: soil microorganisms; microbial ecology; microbial community; microbial diversity; microbial interactions; soil ecosystem; nutrient cycle
(This special issue belongs to the Section Environmental Microbiology)
Advanced Research on Ticks and Tick-Borne Diseases 2.0
edited by Galina N. Leonova and
submission deadline 15 Jun 2024 | 4 articles | Viewed by 3412 | Submission Open
Keywords: ticks; tick-borne viruses and bacteria; ecology; epidemiology; diagnostics; clinical manifestations; therapy
(This special issue belongs to the Section Parasitology)
The Metabolism of Lactobacilli: Molecular Mechanisms and Applications
edited by Junko Nishimura, and Yasushi Kawai
submission deadline 15 Jun 2024 | 3 articles | Viewed by 3330 | Submission Open
Keywords: lactobacilli; metabolites; postbiotics
(This special issue belongs to the Section Molecular Microbiology and Immunology)
Interactions between Plant Beneficial Pseudomonas spp. and Their Host 2.0
edited by
submission deadline 15 Jun 2024 | 2 articles | Viewed by 3101 | Submission Open
(This special issue belongs to the Section Plant Microbe Interactions)
Epidemiology and Pathogenesis of Human Enteroviruses 2.0
edited by
submission deadline 15 Jun 2024 | 1 articles | Viewed by 2537 | Submission Open
(This special issue belongs to the Section Medical Microbiology)
Beneficial Microorganisms and Antimicrobials 2.0 submission deadline 15 Jun 2024 | 2 articles | Viewed by 2095 | Submission Open
Keywords: antimicrobials; beneficial bacteria; probiotics; parabiotics; biological activity; biotherapeuticals
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
Recent Research on Fish Vaccination
edited by and
submission deadline 15 Jun 2024 | 1 articles | Viewed by 1676 | Submission Open
Keywords: fish vaccination; fish vaccines; adjuvants; DNA vaccines; recombinant vaccines; attenuated vaccines; immersion delivery; oral delivery; fish immunology
(This special issue belongs to the Section Molecular Microbiology and Immunology)
The Application Potential of Microalgae in Green Biotechnology
edited by
submission deadline 15 Jun 2024 | 2 articles | Viewed by 1665 | Submission Open
Keywords: microalgae; green biotechnology; biomass; biofuel; biofertilizer; bioremediation
(This special issue belongs to the Section Microbial Biotechnology)
Fungal Infections and Antifungal Strategies
edited by
submission deadline 15 Jun 2024 | 1 articles | Viewed by 1255 | Submission Open
Keywords: fungal Infection; antifungal; drug resistance; antifungal compounds; immune system
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
The Use of Fungal Metabolites in the Food Industry
edited by
submission deadline 15 Jun 2024 | 1 articles | Viewed by 1095 | Submission Open
Keywords: fungi; mold; yeast; metabolites; exopolysaccharides; pullulan; pigment; melanin; single-cell protein.
(This special issue belongs to the Section Food Microbiology)
Microbial Ecology and Sustainable Aquaculture
edited by Lior Guttman
submission deadline 15 Jun 2024 | 1 articles | Viewed by 1012 | Submission Open
Keywords: aquaculture; aquatic microbes; diversity; host– microbe interactions; resilience; sustainability
(This special issue belongs to the Section Environmental Microbiology)
Advances in Pseudomonas aeruginosa Biofilm Control submission deadline 15 Jun 2024 | Viewed by 876 | Submission Open
Keywords: Pseudomonas aeruginosa; biofilm control; antibiofilm strategies; antibiotic resistance; chronic infections; wound infections; lung infections
(This special issue belongs to the Section Biofilm)
Chlamydiae and Chlamydia-Like Infections
edited by and Stephan Verweij
submission deadline 15 Jun 2024 | 1 articles | Viewed by 741 | Submission Open
Keywords: Chlamydiales; Chlamydia infection; molecular and cell biology; genetics and genomics; host– pathogen interaction; diagnostics; vaccine development; epidemiology; prevention and policy; zoonosis; Chlamydia-like; model systems to study Chlamydiae and Chlamydia-like infections
(This special issue belongs to the Section Medical Microbiology)
Molecular Epidemiology of Microbial Diseases in Animals
edited by Juan José Valdez-Alarcón, Elizabeth Loza-Rubio and Paula Ruybal
submission deadline 15 Jun 2024 | Viewed by 697 | Submission Open
Keywords: genotyping; surveillance; epidemiology; gene polymorphisms; evolution
(This special issue belongs to the Section Molecular Microbiology and Immunology)
Bacterial Infections and Antimicrobial Resistance in Animals
edited by
submission deadline 15 Jun 2024 | Viewed by 341 | Submission Open
Keywords: zoonotic foodborne bacteria; salmonellosis; antimicrobial resistance; virulence gene; multiple drug resistance; ESBL; beta-lactamases; PMQR; carbapenemases; MRSA
(This special issue belongs to the Section Veterinary Microbiology)
Common Clinical Viral Pathogens: Detection and Treatment
edited by
submission deadline 15 Jun 2024 | Viewed by 242 | Submission Open
Keywords: virus; zoonoses; vaccine; molecular methods; serology
(This special issue belongs to the Section Virology)
Gut Microbiota and Precise Modulation
edited by
submission deadline 15 Jun 2024 | Viewed by 239 | Submission Open
Keywords: gut microbiota; human health; keystone taxonomy; disease; probiotics; prebiotics; precise modulation
(This special issue belongs to the Section Gut Microbiota)
Interplay between Gut Microbiota and Antimicrobial Resistance
edited by Miriam Fernandes and Viviane Nakano
submission deadline 15 Jun 2024 | Viewed by 230 | Submission Open
Keywords: antibiotic resistance genes (ARGs); horizontal gene transfer; antimicrobial resistance mechanisms; gut microbiota; anaerobes; probiotics; dysbiosis; fecal microbiota transplantation (FMT); One Health
(This special issue belongs to the Section Gut Microbiota)
Parasites and Infection: Strategies to Control, Diagnose, and Treat Parasitic Diseases submission deadline 15 Jun 2024 | Viewed by 223 | Submission Open
Keywords: protozoan; ectoparasites; helminths
(This special issue belongs to the Section Parasitology)
Toxic Microorganisms on Ecosystems: Current Concerns and Expansion
edited by
submission deadline 15 Jun 2024 | Viewed by 214 | Submission Open
Keywords: ecosystems; toxic microroganisms; toxicity public health; water quality
(This special issue belongs to the Section Public Health Microbiology)
Antimicrobial Testing (AMT) 3.0
edited by
submission deadline 15 Jun 2024 | Viewed by 214 | Submission Open
Keywords: antibiogram; antibiotic susceptibility test; antimicrobial testing; bacterial resistance; biofilm-embedded bacteria; antifungal test; genotypic AMT; multidrug resistance; antimicrobial nanoparticle
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
State-of-the-Art Parasitic and Bacterial Infections in Romania 2.0 submission deadline 15 Jun 2024 | Viewed by 204 | Submission Open
Keywords: parasitic and bacterial infections; host– parasite interactions; bacterial pathogens; antimicrobial resistance
(This special issue belongs to the Section Public Health Microbiology)
Research on Relevant Clinical Infections
edited by Ludwig Knabl, Johannes Haybaeck and Silke Huber
submission deadline 28 Jun 2024 | 3 articles | Viewed by 2314 | Submission Open
Keywords: infectious disease; microbial infections; clinical relevance; rapid diagnosis; advanced therapy
(This special issue belongs to the Section Medical Microbiology)
Monkeypox—Current Knowledge and Future Perspectives
edited by and Jakab Ferenc
submission deadline 30 Jun 2024 | 8 articles | Viewed by 20926 | Submission Open
(This special issue belongs to the Section Public Health Microbiology)
Bacterial and Antibiotic Resistance in the Environment
edited by and
submission deadline 30 Jun 2024 | 7 articles | Viewed by 9413 | Submission Open
Keywords: antibiotic-resistant bacteria (ARBs); antibiotic-resistant genes (ARGs); environmental stress; bioaerosols; biofilms; membrane channels; microplastics (MPs); transmission; modeling; wastewater; hospitals
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
Antimicrobial Compounds from Alternative Sources 2.0
edited by and
submission deadline 30 Jun 2024 | 4 articles | Viewed by 9177 | Submission Open
Keywords: antimicrobial compounds from plants: their preparation; use; and biological effects; bee products: their role in obtaining novel antimicrobials; antimicrobial compounds from mineral sources: obtainment methodology; standardization; biological effects; antimicrobials from other sources (marine or terrestrial; microorganisms; etc.): obtainment methodology; effects; biological uses; impact of alternative antimicrobials on antibiotic resistance gene transfer; farming technologies and alternative antibiotic uses; potential role of alternative antimicrobial to control environment pollution; prevention and control of antibiotic resistance by use of alternative antimicrobials
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
Antibiotic-Resistant Enterobacterales at the Human–Animal–Environment Interface submission deadline 30 Jun 2024 | 3 articles | Viewed by 7637 | Submission Open
Keywords: antibiotic-resistant Enterobacterales; epidemiology; risk factors; successful sequence types and their drivers; one health
(This special issue belongs to the Section Antimicrobial Agents and Resistance)
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