The Role of Soil Microbial Community Shift in Soil Sickness

A special issue of Microorganisms (ISSN 2076-2607). This special issue belongs to the section "Environmental Microbiology".

Deadline for manuscript submissions: closed (31 May 2023) | Viewed by 5987

Special Issue Editors


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Guest Editor
Department of Agricultural Sciences, University of Naples Federico II, Via Università 100, 80055 Portici, Italy
Interests: plant–soil microbial interactions; microbial ecology; plant ecology; mycorrhiza
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Guest Editor
Department of Agricultural Sciences, University of Naples Federico II, Via Università 100, 80055 Portici, Italy
Interests: plant pathology; soilborne pathogens; botany; ecology; microbiology; soil organic matter dynamics
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

As plants grow, they alter the biotic and abiotic properties of the soil, which in turn affects the growth and survival of subsequent plants, a process known as plant–soil feedback (PSF). Soil sickness is a typical negative PSF with a reduction in crop yield when the same crop or its related species are grown successively on the same soil. Evidence suggests that the soil microbial community plays an important role in determining soil quality in terms of nutrient availability and pathogen defense. However, these specific microbes in the soil do not function independently but are involved in complex networks through competition, predation, and facilitation. Therefore, it is necessary to study how microbes interact in the soil to elucidate the mechanisms responsible for soil sickness with a reduction in beneficial microbes and an accumulation of pathogens. Many studies have shown that the abundance and diversity of bacteria and fungi changes in association with the cultivation of continuous monocultures. However, how continuous monocultures affect soil microbial interaction networks is largely unknown. For this reason, and with the increasing use of newly developed techniques such as next-generation sequencing, the functioning of the microbial community in soil sickness is receiving more attention than before.

In this Special Issue of Microorganisms, we invite you to submit papers on various aspects of the soil microbial community, such as beneficial and detrimental ones, in the development or alleviation of soil sickness in agroecosystems. In addition, manuscripts are welcome that address the application of organic amendments, biocontrol agents, biochar, and chemical fertilizers and their effects on the soil microbial community for treating soil sickness.

Dr. Mohamed Idbella
Prof. Dr. Giuliano Bonanomi
Guest Editors

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Published Papers (2 papers)

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Research

16 pages, 4098 KiB  
Article
Changes in Bulk and Rhizosphere Soil Microbial Diversity Communities of Native Quinoa Due to the Monocropping in the Peruvian Central Andes
by Richard Estrada, Roberto Cosme, Tatiana Porras, Auristela Reynoso, Constatino Calderon, Carlos I. Arbizu and Gregorio J. Arone
Microorganisms 2023, 11(8), 1926; https://doi.org/10.3390/microorganisms11081926 - 28 Jul 2023
Cited by 1 | Viewed by 2451
Abstract
Quinoa (Chenopodium quinoa) is a highly nutritious crop that is resistant to adverse conditions. Due to the considerable increase in its commercial production in Andean soils, the plant is suffering the negative effects of monocropping, which reduces its yield. We used [...] Read more.
Quinoa (Chenopodium quinoa) is a highly nutritious crop that is resistant to adverse conditions. Due to the considerable increase in its commercial production in Andean soils, the plant is suffering the negative effects of monocropping, which reduces its yield. We used for the first time a high-throughput Illumina MiSeq sequencing approach to explore the composition, diversity, and functions of fungal and bacterial communities of the bulk and rhizosphere in soils of native C. quinoa affected by monocropping in the central Andes of Peru. The results showed that the bacterial and fungal community structure among the treatments was significantly changed by the monocropping and the types of soil (rhizosphere and bulk). Also, in soils subjected to monocropping, there was an increase in Actinobacteria and a decrease in Proteobacteria, and the reduction in the presence of Ascomycota and the increase in Basidiomycota. By alpha-diversity indices, lower values of bacteria and fungi were observed in the monoculture option compared to the soil not affected by monocropping, and sometimes significant differences were found between both. We detected differentially abundant phytopathogenic fungi and bacteria with growth-stimulating effects on plants. Also, we denoted a decrease in the abundance of the functional predictions in bacteria in the monocropped soils. This research will serve as a starting point to explore the importance and effects of microorganisms in degraded soils and their impact on the growth and quality of quinoa crops. Full article
(This article belongs to the Special Issue The Role of Soil Microbial Community Shift in Soil Sickness)
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20 pages, 3400 KiB  
Article
Application of Phytogenic Liquid Supplementation in Soil Microbiome Restoration in Queensland Pasture Dieback
by Xipeng Ren, Maria M. Whitton, Sung J. Yu, Tieneke Trotter, Yadav S. Bajagai and Dragana Stanley
Microorganisms 2023, 11(3), 561; https://doi.org/10.3390/microorganisms11030561 - 23 Feb 2023
Cited by 1 | Viewed by 1696
Abstract
Pasture production is vital in cattle farming as it provides animals with food and nutrients. Australia, as a significant global beef producer, has been experiencing pasture dieback, a syndrome of deteriorating grassland that results in the loss of grass and the expansion of [...] Read more.
Pasture production is vital in cattle farming as it provides animals with food and nutrients. Australia, as a significant global beef producer, has been experiencing pasture dieback, a syndrome of deteriorating grassland that results in the loss of grass and the expansion of weeds. Despite two decades of research and many remediation attempts, there has yet to be a breakthrough in understanding the causes or mechanisms involved. Suggested causes of this phenomenon include soil and plant microbial pathogens, insect infestation, extreme heat stress, radiation, and others. Plants produce a range of phytomolecules with antifungal, antibacterial, antiviral, growth-promoting, and immunostimulant effects to protect themselves from a range of environmental stresses. These products are currently used more in human and veterinary health than in agronomy. In this study, we applied a phytogenic product containing citric acid, carvacrol, and cinnamaldehyde, to investigate its ability to alleviate pasture dieback. The phytogenic liquid-based solution was sprayed twice, one week apart, at 5.4 L per hectare. The soil microbial community was investigated longitudinally to determine long-term effects, and pasture productivity and plant morphometric improvements were explored. The phytogenic liquid significantly improved post-drought recovery of alpha diversity and altered temporal and spatial change in the community. The phytogenic liquid reduced biomarker genera associated with poor and polluted soils and significantly promoted plant and soil beneficial bacteria associated with plant rhizosphere and a range of soil benefits. Phytogenic liquid application produced plant morphology improvements and a consistent enhancement of pasture productivity extending beyond 18 months post-application. Our data show that phytogenic products used in the livestock market as an alternative to antibiotics may also have a beneficial role in agriculture, especially in the light of climate change-related soil maintenance and remediation. Full article
(This article belongs to the Special Issue The Role of Soil Microbial Community Shift in Soil Sickness)
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