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Application of 3D Culture Systems in Cancer Development and Anti-tumor Drug Selection: Advantages and Drawbacks

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Biophysics".

Deadline for manuscript submissions: closed (31 August 2020) | Viewed by 42464

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Unit of Molecular Oncology and Angiogenesis, IRCCS Ospedale Policlinico San Martino, 16132 Genoa, Italy
Interests: mesenchymal stromal cells; NKG2D; innate immunity; leukemia and lymphoma; anti-tumor immunity
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Guest Editor
Division of Immunology, Transplants and Infectious Diseases, IRCCS San Raffaele Scientific Institute, 20132 Milan, Italy

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SSD Molecular Oncology and e Angiogenesis, IRCCS Ospedale Policlinico San Martino, Viale Rosanna Benzi 10, 16132 Genoa, Italy
Interests: colorectal cancer; tumor microenvironment; immunohistochemistry; intracellular signaling; 3D primary cultures; organoids; EGFR; Akt; Erk; COX2
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

In the last decade, 3D cell culture systems have been improved with new techniques and formulations that allow the culture of cell lines as well as organoids from primary tissues. In these conditions, mini-tissues can orient themselves spatially, creating niches enriched in stem or differentiated cells that are more representative of the different sub-populations found in the tissue of origin. These tools allow precise and direct monitoring of physiological and pathological mechanisms, and are often much more informative and versatile than in vivo tests. Ideally, the final goal of these models is an in vitro recapitulation of the tissue of origin, with different cellular components (epithelium, stroma, leukocytes) colonizing a matrix that reproduces the spatial conformation of the tissue. These tools can be essential for analyzing the physiological behavior of healthy cells and patients’ cells derived from several diseases such as cancers, metabolic diseases, neurodegenerative disorders, autoimmune diseases, and inherited pathologies. These systems would allow scientists to in vitro mimic the in vivo microenvironment without the use of animals models that are usually quite expensive and in some instances do not fully resemble the real patho-physiological environment. This Special Issue of IJMS will offer an overview of the main 3D models applied to the study of physiological and pathological processes in humans, with a special focus on cancer development and anti-tumor drug selection.

Prof. Dr. Alessandro Poggi
Dr. Maria Raffaella Zocchi
Dr. Roberto Benelli
Guest Editors

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Published Papers (9 papers)

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Editorial

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3 pages, 163 KiB  
Editorial
Three-Dimensional (3D) Culture Models in Cancer Investigation, Drug Testing and Immune Response Evaluation
by Roberto Benelli, Maria Raffaella Zocchi and Alessandro Poggi
Int. J. Mol. Sci. 2021, 22(1), 150; https://doi.org/10.3390/ijms22010150 - 25 Dec 2020
Cited by 2 | Viewed by 1805
Abstract
Preclinical models for the definition of anti-cancer drug safety and efficacy are constantly evolving [...] Full article

Research

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17 pages, 2348 KiB  
Article
Digital Image Analysis Applied to Tumor Cell Proliferation, Aggressiveness, and Migration-Related Protein Synthesis in Neuroblastoma 3D Models
by Ezequiel Monferrer, Sabina Sanegre, Susana Martín-Vañó, Andrea García-Lizarribar, Rebeca Burgos-Panadero, Amparo López-Carrasco, Samuel Navarro, Josep Samitier and Rosa Noguera
Int. J. Mol. Sci. 2020, 21(22), 8676; https://doi.org/10.3390/ijms21228676 - 17 Nov 2020
Cited by 6 | Viewed by 3669
Abstract
Patient-derived cancer 3D models are a promising tool that will revolutionize personalized cancer therapy but that require previous knowledge of optimal cell growth conditions and the most advantageous parameters to evaluate biomimetic relevance and monitor therapy efficacy. This study aims to establish general [...] Read more.
Patient-derived cancer 3D models are a promising tool that will revolutionize personalized cancer therapy but that require previous knowledge of optimal cell growth conditions and the most advantageous parameters to evaluate biomimetic relevance and monitor therapy efficacy. This study aims to establish general guidelines on 3D model characterization phenomena, focusing on neuroblastoma. We generated gelatin-based scaffolds with different stiffness and performed SK-N-BE(2) and SH-SY5Y aggressive neuroblastoma cell cultures, also performing co-cultures with mouse stromal Schwann cell line (SW10). Model characterization by digital image analysis at different time points revealed that cell proliferation, vitronectin production, and migration-related gene expression depend on growing conditions and are specific to the tumor cell line. Morphometric data show that 3D in vitro models can help generate optimal patient-derived cancer models, by creating, identifying, and choosing patterns of clinically relevant artificial microenvironments to predict patient tumor cell behavior and therapeutic responses. Full article
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18 pages, 5531 KiB  
Article
Rapid Clearing for High Resolution 3D Imaging of Ex Vivo Pancreatic Cancer Spheroids
by Eliana Steinberg, Natalie Orehov, Katerina Tischenko, Ouri Schwob, Gideon Zamir, Ayala Hubert, Zakhariya Manevitch and Ofra Benny
Int. J. Mol. Sci. 2020, 21(20), 7703; https://doi.org/10.3390/ijms21207703 - 18 Oct 2020
Cited by 10 | Viewed by 3971
Abstract
The currently accepted imaging methods have been a central hurdle to imaging the finer details of tumor behavior in three-dimensional (3D) ex vivo multicellular culture models. In our search for an improved way of imaging tumor behavior in its physiological-like niche, we developed [...] Read more.
The currently accepted imaging methods have been a central hurdle to imaging the finer details of tumor behavior in three-dimensional (3D) ex vivo multicellular culture models. In our search for an improved way of imaging tumor behavior in its physiological-like niche, we developed a simple, efficient, and straightforward procedure using standard reagents and imaging equipment that significantly enhanced 3D imaging up to a ~200-micron depth. We tested its efficacy on pancreatic spheroids, prototypes of high-density tissues that are difficult to image. We found we could both save time with this method and extract information about pancreatic tumor spheroids that previously was difficult to obtain. We were able to discern clear differences in the organization of pancreatic tumor spheroids generated from different origins, suggesting cell-specific, inherent, bottom-up organization with a correlation to the level of malignancy. We also examined the dynamic changes in the spheroids at predetermined time points, providing important information related to tissue morphogenesis and its metabolic state. Lastly, this process enabled us to assess a drug vehicle’s potential to penetrate dense tumor tissue by improving our view of the inert particles’ diffusion in the 3D spheroid. This clearing method, a simple procedure, can open the door to more accurate imaging and reveal more about cancer behavior. Full article
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18 pages, 4754 KiB  
Article
Astrocytes Decreased the Sensitivity of Glioblastoma Cells to Temozolomide and Bay 11-7082
by Sadaf E. Pustchi, Naze G. Avci, Yasemin M. Akay and Metin Akay
Int. J. Mol. Sci. 2020, 21(19), 7154; https://doi.org/10.3390/ijms21197154 - 28 Sep 2020
Cited by 11 | Viewed by 3654
Abstract
Glioblastoma multiforme (GBM) is the most common malignant type of astrocytic tumors. GBM patients have a poor prognosis with a median survival of approximately 15 months despite the “Stupp” Regimen and high tumor recurrence due to the tumor resistance to chemotherapy. In this [...] Read more.
Glioblastoma multiforme (GBM) is the most common malignant type of astrocytic tumors. GBM patients have a poor prognosis with a median survival of approximately 15 months despite the “Stupp” Regimen and high tumor recurrence due to the tumor resistance to chemotherapy. In this study, we co-cultured GBM cells with human astrocytes in three-dimensional (3D) poly(ethylene glycol) dimethyl acrylate (PEGDA) microwells to mimic the tumor microenvironment. We treated 3D co- and mono-cultured cells with Temozolomide (TMZ) and the nuclear factor-κB (NF-κB) inhibitor Bay 11-7082 and investigated the combined effect of the drugs. We assessed the expressions of glial fibrillary acidic protein (GFAP) and vimentin that play a role in the tumor malignancy and activation of the astrocytes as well as Notch-1 and survivin that play a role in GBM malignancy after the drug treatment to understand how astrocytes induced GBM drug response. Our results showed that in the co-culture, astrocytes increased GBM survival and resistance after combined drug treatment compared to mono-cultures. These data restated the importance of 3D cell culture to mimic the tumor microenvironment for drug screening. Full article
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16 pages, 3609 KiB  
Article
Assessing Advantages and Drawbacks of Rapidly Generated Ultra-Large 3D Breast Cancer Spheroids: Studies with Chemotherapeutics and Nanoparticles
by Austin R. Holub, Anderson Huo, Kavil Patel, Vishal Thakore, Pranav Chhibber and Folarin Erogbogbo
Int. J. Mol. Sci. 2020, 21(12), 4413; https://doi.org/10.3390/ijms21124413 - 21 Jun 2020
Cited by 9 | Viewed by 4870
Abstract
Traditionally, two-dimensional (2D) monolayer cell culture models have been used to study in vitro conditions for their ease of use, simplicity and low cost. However, recently, three-dimensional (3D) cell culture models have been heavily investigated as they provide better physiological relevance for studying [...] Read more.
Traditionally, two-dimensional (2D) monolayer cell culture models have been used to study in vitro conditions for their ease of use, simplicity and low cost. However, recently, three-dimensional (3D) cell culture models have been heavily investigated as they provide better physiological relevance for studying various disease behaviors, cellular activity and pharmaceutical interactions. Typically, small-sized tumor spheroid models (100–500 μm) are used to study various biological and physicochemical activities. Larger, millimetric spheroid models are becoming more desirable for simulating native tumor microenvironments (TMEs). Here, we assess the use of ultra-large spheroid models (~2000 μm) generated from scaffolds made from a nozzle-free, ultra-high resolution printer; these models are explored for assessing chemotherapeutic responses with molecular doxorubicin (DOX) and two analogues of Doxil (Dox-NP, DoxovesTM) on MDA-MB-231 and MCF-7 breast cancer cell lines. To provide a comparative baseline, small spheroid models (~500 μm) were developed using a self-aggregation method of MCF-7 breast cancer cell lines, and underwent similar drug treatments. Analysis of both large and small MCF-7 spheroids revealed that Dox-NP tends to have the highest level of inhibition, followed by molecular doxorubicin and then Doxoves. The experimental advantages and drawbacks of using these types of ultra-large spheroids for cancer research are discussed. Full article
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23 pages, 4295 KiB  
Article
Evaluation of Melanoma (SK-MEL-2) Cell Growth between Three-Dimensional (3D) and Two-Dimensional (2D) Cell Cultures with Fourier Transform Infrared (FTIR) Microspectroscopy
by Tarapong Srisongkram, Natthida Weerapreeyakul and Kanjana Thumanu
Int. J. Mol. Sci. 2020, 21(11), 4141; https://doi.org/10.3390/ijms21114141 - 10 Jun 2020
Cited by 14 | Viewed by 4334
Abstract
Fourier transform infrared (FTIR) microspectroscopy was used to evaluate the growth of human melanoma cells (SK-MEL-2) in two-dimensional (2D) versus three-dimensional (3D) spheroid culture systems. FTIR microspectroscopy, coupled with multivariate analysis, could be used to monitor the variability of spheroid morphologies prepared from [...] Read more.
Fourier transform infrared (FTIR) microspectroscopy was used to evaluate the growth of human melanoma cells (SK-MEL-2) in two-dimensional (2D) versus three-dimensional (3D) spheroid culture systems. FTIR microspectroscopy, coupled with multivariate analysis, could be used to monitor the variability of spheroid morphologies prepared from different cell densities. The characteristic shift in absorbance bands of the 2D cells were different from the spectra of cells from 3D spheroids. FTIR microspectroscopy can also be used to monitor cell death similar to fluorescence cell staining in 3D spheroids. A change in the secondary structure of protein was observed in cells from the 3D spheroid versus the 2D culture system. FTIR microspectroscopy can detect specific alterations in the biological components inside the spheroid, which cannot be detected using fluorescence cell death staining. In the cells from 3D spheroids, the respective lipid, DNA, and RNA region content represent specific markers directly proportional to the spheroid size and central area of necrotic cell death, which can be confirmed using unsupervised PCA and hierarchical cluster analysis. FTIR microspectroscopy could be used as an alternative tool for spheroid cell culture discrimination, and validation of the usual biochemical technique. Full article
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18 pages, 3057 KiB  
Article
Synergy between Photodynamic Therapy and Dactinomycin Chemotherapy in 2D and 3D Ovarian Cancer Cell Cultures
by Layla Mohammad Hadi, Elnaz Yaghini, Alexander J. MacRobert and Marilena Loizidou
Int. J. Mol. Sci. 2020, 21(9), 3203; https://doi.org/10.3390/ijms21093203 - 30 Apr 2020
Cited by 13 | Viewed by 3490
Abstract
In this study we explored the efficacy of combining low dose photodynamic therapy using a porphyrin photosensitiser and dactinomycin, a commonly used chemotherapeutic agent. The studies were carried out on compressed collagen 3D constructs of two human ovarian cancer cell lines (SKOV3 and [...] Read more.
In this study we explored the efficacy of combining low dose photodynamic therapy using a porphyrin photosensitiser and dactinomycin, a commonly used chemotherapeutic agent. The studies were carried out on compressed collagen 3D constructs of two human ovarian cancer cell lines (SKOV3 and HEY) versus their monolayer counterparts. An amphiphilc photosensitiser was employed, disulfonated tetraphenylporphine, which is not a substrate for ABC efflux transporters that can mediate drug resistance. The combination treatment was shown to be effective in both monolayer and 3D constructs of both cell lines, causing a significant and synergistic reduction in cell viability. Compared to dactinomycin alone or PDT alone, higher cell kill was found using 2D monolayer culture vs. 3D culture for the same doses. In 3D culture, the combination therapy resulted in 10 and 22 times higher cell kill in SKOV3 and HEY cells at the highest light dose compared to dactinomycin monotherapy, and 2.2 and 5.5 times higher cell kill than PDT alone. The combination of low dose PDT and dactinomycin appears to be a promising way to repurpose dactinomycin and widen its therapeutic applications. Full article
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14 pages, 5840 KiB  
Article
3D Bioprinted Vascularized Tumour for Drug Testing
by Seokgyu Han, Sein Kim, Zhenzhong Chen, Hwa Kyoung Shin, Seo-Yeon Lee, Hyo Eun Moon, Sun Ha Paek and Sungsu Park
Int. J. Mol. Sci. 2020, 21(8), 2993; https://doi.org/10.3390/ijms21082993 - 23 Apr 2020
Cited by 55 | Viewed by 7251
Abstract
An in vitro screening system for anti-cancer drugs cannot exactly reflect the efficacy of drugs in vivo, without mimicking the tumour microenvironment (TME), which comprises cancer cells interacting with blood vessels and fibroblasts. Additionally, the tumour size should be controlled to obtain reliable [...] Read more.
An in vitro screening system for anti-cancer drugs cannot exactly reflect the efficacy of drugs in vivo, without mimicking the tumour microenvironment (TME), which comprises cancer cells interacting with blood vessels and fibroblasts. Additionally, the tumour size should be controlled to obtain reliable and quantitative drug responses. Herein, we report a bioprinting method for recapitulating the TME with a controllable spheroid size. The TME was constructed by printing a blood vessel layer consisting of fibroblasts and endothelial cells in gelatine, alginate, and fibrinogen, followed by seeding multicellular tumour spheroids (MCTSs) of glioblastoma cells (U87 MG) onto the blood vessel layer. Under MCTSs, sprouts of blood vessels were generated and surrounding MCTSs thereby increasing the spheroid size. The combined treatment involving the anti-cancer drug temozolomide (TMZ) and the angiogenic inhibitor sunitinib was more effective than TMZ alone for MCTSs surrounded by blood vessels, which indicates the feasibility of the TME for in vitro testing of drug efficacy. These results suggest that the bioprinted vascularized tumour is highly useful for understanding tumour biology, as well as for in vitro drug testing. Full article
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Review

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19 pages, 620 KiB  
Review
Three-Dimensional Cell Cultures as an In Vitro Tool for Prostate Cancer Modeling and Drug Discovery
by Fabrizio Fontana, Michela Raimondi, Monica Marzagalli, Michele Sommariva, Nicoletta Gagliano and Patrizia Limonta
Int. J. Mol. Sci. 2020, 21(18), 6806; https://doi.org/10.3390/ijms21186806 - 16 Sep 2020
Cited by 33 | Viewed by 8582
Abstract
In the last decade, three-dimensional (3D) cell culture technology has gained a lot of interest due to its ability to better recapitulate the in vivo organization and microenvironment of in vitro cultured cancer cells. In particular, 3D tumor models have demonstrated several different [...] Read more.
In the last decade, three-dimensional (3D) cell culture technology has gained a lot of interest due to its ability to better recapitulate the in vivo organization and microenvironment of in vitro cultured cancer cells. In particular, 3D tumor models have demonstrated several different characteristics compared with traditional two-dimensional (2D) cultures and have provided an interesting link between the latter and animal experiments. Indeed, 3D cell cultures represent a useful platform for the identification of the biological features of cancer cells as well as for the screening of novel antitumor agents. The present review is aimed at summarizing the most common 3D cell culture methods and applications, with a focus on prostate cancer modeling and drug discovery. Full article
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