MicroRNA in Cancers

A special issue of Genes (ISSN 2073-4425). This special issue belongs to the section "Molecular Genetics and Genomics".

Deadline for manuscript submissions: closed (10 March 2024) | Viewed by 9988

Special Issue Editor


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Guest Editor
Independent Researcher, Ottawa, ON K2G 4C2, Canada
Interests: gene regulation; computational biology; bioinformatics; genomics; algorithms

Special Issue Information

Dear Colleagues,

Micro-RNAs (miRNAs) are a class of small single-stranded noncoding RNAs, with the typical length distribution of 19 to 25 (sometimes 18 to 35), and an average length of 21–22 nucleotides. Typical miRNAs are transcribed from DNA sequence segments into primary miRNAs, then processed into precursor miRNAs, and finally mature miRNAs. Mature miRNAs modulate gene expression at the post-transcriptional level as endogenous suppressors of the translation of coding genes, by translational inhibition and subsequent degradation of target mRNAs. They fulfill this function mostly by binding through base-pairing to specific sequence motifs located within the 3′ untranslated region (UTR) of mRNA transcripts, although some may also bind to other regions, including the 5′ UTR, coding sequence, and gene promoters. miRNA/mRNA binding is dynamic process dependent on many factors, such as their mutual affinity, concentration, and subcellular location. miRNAs can be transported out of their native cell to target other cells via vesicles, such as exosomes, or by binding to proteins, including Argonautes. They appear to target about 60% of the genes of humans and other mammals and are related to many cell processes, such as development, differentiation, growth, proliferation, apoptosis, and immune responses. miRNAs are also known to be associated with the diagnosis, classification, progression, and prognosis of many human diseases. The most remarkable are various heart and kidney diseases, stroke, obesity, and several types of cancer (chronic lymphocytic leukemia, colorectal cancer, hepatocellular carcinoma, and more). Therefore, “oncomirs” can be considered potential biomarkers for cancer diagnosis and as therapeutic targets.

In this Special Issue, we would like to invite submissions of original research articles and review articles focused on miRNAs, in particular, on their functions, regulatory mechanisms, and applications, specifically those related to cancer. We also welcome studies that highlight new technologies, new analysis platforms, new animal models, and new manipulation tools for the study of “oncomirs”.

Dr. Ilya Ioshikhes
Guest Editor

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Keywords

  • noncoding RNAs
  • gene silencing
  • microRNA
  • cancer
  • diagnosis

Published Papers (4 papers)

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Research

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11 pages, 1400 KiB  
Article
Increased Levels of miR-15b-5p and miR-20b-5p in Pancreatic Ductal Adenocarcinoma with Hepatic Metastases
by Maria Dobre, Radu Cristian Poenaru, Andrei Marian Niculae, Catalina Vladut, Vlad Herlea, Elena Milanesi and Mihail Eugen Hinescu
Genes 2023, 14(8), 1577; https://doi.org/10.3390/genes14081577 - 02 Aug 2023
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Abstract
Pancreatic ductal adenocarcinoma (PDAC) is one of the most aggressive and lethal forms of cancer. The symptoms appear in advanced stages, and diagnostic and prognostic tests for the early detection of PDAC and disease evolution are not available. The dysregulation of microRNAs (miRNAs) [...] Read more.
Pancreatic ductal adenocarcinoma (PDAC) is one of the most aggressive and lethal forms of cancer. The symptoms appear in advanced stages, and diagnostic and prognostic tests for the early detection of PDAC and disease evolution are not available. The dysregulation of microRNAs (miRNAs) has been associated with cancer development and progression, and some miRNAs have been reported to promote specific metastasis. In this study we aimed to identify the miRNAs dysregulated in PDAC tumoral tissues and a subset of miRNAs associated with tumoral characteristics, mainly metastasis presence and site. For this, the expression of 84 miRNAs was evaluated by qPCR in 30 tumoral tissues and 16 samples of non-tumoral pancreatic tissues. The comparison revealed 32 dysregulated miRNAs (19 upregulated and 13 downregulated) in the PDAC group. Reactome pathway over-representation analysis revealed that these miRNAs are involved in several biological pathways, including “ESR-mediated signaling”, “PIP3 activates AKT signaling”, and “Regulation of PTEN”, among others. Moreover, our study identified an upregulation of miR-15b-5p and miR-20b-5p in the tumoral tissues of patients with hepatic metastasis, outlining these miRNAs as potential markers for hepatic metastasis. No significant difference in miRNA expression was observed in relation to anatomic location, lymphovascular invasion, lung metastasis, and the presence of diabetes. Full article
(This article belongs to the Special Issue MicroRNA in Cancers)
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12 pages, 647 KiB  
Article
The Role of miRNA-221 and miRNA-34a in Non-Melanoma Skin Cancer of the Head and Neck Region
by Tiberiu Tamas, Lajos Raduly, Ioana Berindan-Neagoe, Cristian Dinu, Emil Botan, Bogdan Bumbu, Adela Tamas, Sebastian Stoia, Daniel Corneliu Leucuta, Simion Bran, Florin Onisor, Grigore Băciuț, Gabriel Armencea and Mihaela Băciuț
Genes 2023, 14(2), 503; https://doi.org/10.3390/genes14020503 - 16 Feb 2023
Cited by 1 | Viewed by 1914
Abstract
Non-melanoma skin cancer (NMSC) is one of the most frequent types of malignancy in the human body with an increasing incidence. Short, non-coding RNA molecules called microRNAs (miRNAs) can control post-transcriptional gene expression and they have a significant role in several physiological cellular [...] Read more.
Non-melanoma skin cancer (NMSC) is one of the most frequent types of malignancy in the human body with an increasing incidence. Short, non-coding RNA molecules called microRNAs (miRNAs) can control post-transcriptional gene expression and they have a significant role in several physiological cellular processes and pathologies, including cancer. Depending on the functions of the genes, miRNAs may function as oncogenes or tumor suppressors. The aim of this paper was to describe the role of miRNA-34a and miRNA-221 in head and neck NMSC. Thirty-eight NMSC match paired (tumor and adjacent) tissue samples were evaluated by qRT-PCR. Total RNA was extracted and isolated from tissue samples using the phenol-chloroform (Trireagent) method according to the manufacturer’s protocol. The concentration of RNA was measured by a NanoDrop-1000 spectrophotometer. The expression level of each miRNA was calculated by threshold cycle. For all statistical tests, the 0.05 significance level was used and two-tailed p values. All analyses were conducted in an R environment for statistical computing and graphics. We found the miRNA-221 being overexpressed in squamous cell carcinoma (SCC) (p < 0.05), basal cell carcinoma (BCC) and basosquamous cell carcinoma (BSC) compared with adjacent normal tissue. Additionally, the levels of miRNA-221 were two times higher (p < 0.05) in cases where the excision of the tumor was done with positive margins (R1), which means that we are the first to highlight the potential role of miRNA-221 in the microscopical local invasion. Mi-RNA-34a expression was altered in the malignant tissue compared with the adjacent normal one both in BCC and SCC but not statistically significantly. In conclusion, NMSC are challenging because of their increasing incidence and rapidly evolving development and discovering their molecular mechanisms of action lead us to understand tumorigenesis and evolution, while also contributing to the implementation of novel therapeutic keys. Full article
(This article belongs to the Special Issue MicroRNA in Cancers)
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Review

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11 pages, 248 KiB  
Review
miRNA as a Biomarker for the Early Detection of Colorectal Cancer
by David Coleman and Scott Kuwada
Genes 2024, 15(3), 338; https://doi.org/10.3390/genes15030338 - 05 Mar 2024
Viewed by 872
Abstract
MicroRNAs (miRNAs) are short, non-coding RNA segments that can be detected in a variety of clinical samples, including serum, stool, and urine. While miRNAs were initially known for their effect on post-translational gene expression, the last decade of research has shown them to [...] Read more.
MicroRNAs (miRNAs) are short, non-coding RNA segments that can be detected in a variety of clinical samples, including serum, stool, and urine. While miRNAs were initially known for their effect on post-translational gene expression, the last decade of research has shown them to be promising biomarkers for the detection of many types of cancer. This paper explores the use of miRNA detection as a tool for colorectal cancer (CRC) screening. We discuss the current state of miRNA detection, compare it to the existing CRC screening tools, and highlight the advantages and drawbacks of this approach from a clinical and logistical perspective. Our research finds that miRNA-based tests for CRC show great potential, but that widespread clinical adoption will be conditional on future research overcoming key hurdles. Full article
(This article belongs to the Special Issue MicroRNA in Cancers)
18 pages, 1098 KiB  
Review
miRNAs: Potential as Biomarkers and Therapeutic Targets for Cancer
by Atonu Chakrabortty, Daniel J. Patton, Bruce F. Smith and Payal Agarwal
Genes 2023, 14(7), 1375; https://doi.org/10.3390/genes14071375 - 29 Jun 2023
Cited by 18 | Viewed by 5637
Abstract
MicroRNAs (miRNAs) are single-stranded, non-coding RNA molecules that regulate gene expression post-transcriptionally by binding to messenger RNAs. miRNAs are important regulators of gene expression, and their dysregulation is implicated in many human and canine diseases. Most cancers tested to date have been shown [...] Read more.
MicroRNAs (miRNAs) are single-stranded, non-coding RNA molecules that regulate gene expression post-transcriptionally by binding to messenger RNAs. miRNAs are important regulators of gene expression, and their dysregulation is implicated in many human and canine diseases. Most cancers tested to date have been shown to express altered miRNA levels, which indicates their potential importance in the oncogenic process. Based on this evidence, numerous miRNAs have been suggested as potential cancer biomarkers for both diagnosis and prognosis. miRNA-based therapies have also been tested in different cancers and have provided measurable clinical benefits to patients. In addition, understanding miRNA biogenesis and regulatory mechanisms in cancer can provide important knowledge about resistance to chemotherapies, leading to more personalized cancer treatment. In this review, we comprehensively summarized the importance of miRNA in human and canine cancer research. We discussed the current state of development and potential for the miRNA as both a diagnostic marker and a therapeutic target. Full article
(This article belongs to the Special Issue MicroRNA in Cancers)
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