Topical Collection "Feature Papers in Phylogeny and Evolution"
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Editor
Topical Collection Information
Dear Colleagues,
As Diversity is a generalist journal, we hereby invite authors to submit articles outlining the state of the art of some special features concerning phylogeny and evolution, dealing with all aspects of the evolution and phylogeny of organisms, both living and extinct.
Specialized or local studies will be evaluated only if discussion leads to/illustrates general questions/conclusions relevant to evolution and phylogeny. Both descriptive studies and more theoretical papers are acceptable.
The following list includes some of the topics covered:
- Evolutionary biology;
- Phylogenetic reconstruction;
- Evolution of ecosystems;
- Palaeontology;
- Palaeobotany;
- Micropalaeontology;
- Invertebrate palaeontology;
- Vertebrate palaeontology;
- Palaeobiology;
- Fossil record;
- Macroevolution;
- Molecular phylogeny;
- Ancient DNA;
- Evolutionary biogeography;
- Palaeobiogeography;
- Island biogeography;
- Extinctions;
- Evolution of behavior;
- Evolutionary patterns;
- Mechanisms of evolution;
- Factors of evolutionary change;
- Climate change and evolution.
Submissions must represent a starting point for further research and be equally accessible to non-biologists and to specialists in the field.
Dr. Eric Buffetaut
Collection Editor
Manuscript Submission Information
Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the collection website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.
Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Diversity is an international peer-reviewed open access monthly journal published by MDPI.
Please visit the Instructions for Authors page before submitting a manuscript.
The Article Processing Charge (APC) for publication in this open access journal is 2000 CHF (Swiss Francs).
Submitted papers should be well formatted and use good English. Authors may use MDPI's
English editing service prior to publication or during author revisions.
Keywords
- phylogeny
- evolution
- palaeontology
- DNA
- molecular phylogeny
Published Papers (2 papers)
2022
Open AccessArticle
Characterization of Two New Apodemus Mitogenomes (Rodentia: Muridae) and Mitochondrial Phylogeny of Muridae
Cited by 1 | Viewed by 966
Abstract
Apodemus is the most common small rodent species in the Palearctic realm and an ideal species for biogeographical research and understanding environmental changes. Elucidating phylogenetic relationships will help us better understand species adaptation and genetic evolution. Due to its stable structure, maternal inheritance,
[...] Read more.
Apodemus is the most common small rodent species in the Palearctic realm and an ideal species for biogeographical research and understanding environmental changes. Elucidating phylogenetic relationships will help us better understand species adaptation and genetic evolution. Due to its stable structure, maternal inheritance, and rapid evolution, the mitogenome has become a hot spot for taxonomic and evolutionary studies. In this research, we determined the mitochondrial genome of
Apodemus agrarius ningpoensis and
Apodemus draco draco and studied the phylogeny of Muridae using ML and BI trees based on all known complete mitogenomes. The mitochondrial genome of
Apodemus agrarius ningpoensis was 16,262 bp, whereas that of
Apodemus draco draco was 16,222 bp, and both encoded 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. Analysis of base composition showed a clear A-T preference. All tRNAs except tRNA
Ser and tRNA
Lys formed a typical trilobal structure. All protein-coding genes contained T- and TAA as stop codons. Phylogeny analysis revealed two main branches in the Muridae family.
Apodemus agrarius ningpoensis formed sister species with
Apodemus chevrieri, whereas
Apodemus draco draco with
Apodemus latronum. Our findings provide theoretical basis for future studies focusing on the mitogenome evolution of
Apodemus.
Full article
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Open AccessEditor’s ChoiceArticle
Phylogenetic Reconstruction of the Rainforest Lineage Fontainea Heckel (Euphorbiaceae) Based on Chloroplast DNA Sequences and Reduced-Representation SNP Markers
Cited by 2 | Viewed by 1714
Abstract
Fontainea is a plant genus with nine recognised species that occur across the tropical and subtropical rainforests of Australia, Papua New Guinea, New Caledonia, and Vanuatu. One of these species is cultivated commercially as the source of a cancer therapeutic, and several other
[...] Read more.
Fontainea is a plant genus with nine recognised species that occur across the tropical and subtropical rainforests of Australia, Papua New Guinea, New Caledonia, and Vanuatu. One of these species is cultivated commercially as the source of a cancer therapeutic, and several other species are under threat of extinction. Despite this, the phylogenetic relationships of the genus have not been explored. Our study assessed the phylogeny of seven
Fontainea taxa from the Australian and Pacific Island complex using chloroplast DNA sequence data and reduced-representation genome sequencing. Maximum-likelihood and consensus network trees were used to infer the topology of phylogenetic relationships between species, which highlighted three distinct lineages and a number of sister species. Our results indicated that the geographically disjunct species
Fontainea venosa and
F. pancheri formed a sister group at the earliest position of divergence for the genus. The data also revealed that the vulnerable
Fontainea australis and the critically endangered
F. oraria form a sister subclade with evidence of some shared plastid genotypes. Generally, our phylogenetic reconstruction supports the modern taxonomical nomenclature. However, we suggest further accessions across several species may support improved genetic distinctions between the sister groups of
Fontainea within the genus.
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