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Article

Metabolome of Cadmium Stressed Gracilaria caudata (Rhodophyta)

1
Laboratory of Algal Biochemistry and Molecular Biology, Department of Biochemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, São Paulo 05508-000, SP, Brazil
2
Group of Ecology, Evolution and Bevaviour, Department of Biological Sciences, College of Letters and Science, University of Wisconsin-Milwaukee, 3209 N Maryland Ave, Milwaukee, WI 53211, USA
*
Author to whom correspondence should be addressed.
Phycology 2023, 3(2), 255-269; https://doi.org/10.3390/phycology3020016
Submission received: 6 February 2023 / Revised: 29 March 2023 / Accepted: 1 April 2023 / Published: 26 April 2023
(This article belongs to the Special Issue Role of Algae in Bioremediation of Heavy Metals)

Abstract

:
We report here the effects of cadmium on the metabolome of the macroalga Gracilaria caudata. The IC50 of 3 mg/L (12 µM) was obtained after 48 hrs exposure and induced lower photosynthesis efficiency. Threshold concentrations determined by the Brazilian Environmental Council (CONAMA) in marine waters (0.04 mg/L) and effluent discharge (0.2 mg/L) were also tested, and the latter changed photosynthetic efficiency similarly to IC50. A total of 43 metabolites were identified, including monosaccharides, carboxylic acids, and amino acids. By an unsupervised PCA, we identified significative alterations in the metabolome by the IC50. An OPLS-DA analysis showed that Cd2+ exposure caused the variation of 20 metabolites, mainly glyoxylate-related, ascorbate, floridoside and proline. Five metabolic pathways altered by Cd2+ showed an accumulation of amino acids, carbon metabolism intermediates and antioxidant responses to Cd2+. We recommend a review of the toxicity parameters and methods that guide environmental policies on cadmium levels in Brazilian marine waters.

1. Introduction

The trophic chain and diversity in coastal environments are highly dependent on the pivotal role of the macroalgae [1]. Macroalgae are important for oxygen and organic matter production and nutrient cycling [2]; they also provide shelter for several other organisms, supporting 50% of the world fishing market [3]. Frequently impacted in urbanized coastal areas [4], seaweeds are mainly vulnerable for their high capacity of pollutant uptake pollutants, which characterizes them as beginners in the biomagnification [5,6,7,8].
Metals are the most studied class of pollutants due to their widespread distribution and their high potential to cause chronic and irreversible damage to the environment [9,10]. Cadmium (Cd) is a non-essential metal, naturally distributed and ubiquitous in human activities. Cadmium is resistant to biodegradation, accumulating along the food chain and being a chronic source of contamination [11], and it can decrease photosynthesis rate by inhibiting CO2 fixation in green microalgae [12].
Seaweeds are capable of chelating non-essential metals through phytochelatins, but it can be insufficient, leading to increased concentration of reactive oxygen species (ROS) in the cell [13,14,15,16], decreased cellular antioxidant ability and decreased enzyme activity due to competitive inhibition with essential metals [17]. Primary metabolites affected under stress conditions are amino acids, sugars, oxylipids, unsaturated fatty acids, polyamines, organic acids and phenolic compounds [3]. Metabolomics can directly evaluate these molecules allowing a precise characterization of cellular biochemical activity and its correlation with genetic and/or environmental changes [18]. It is a momentary and sensible profile of cellular regulatory events responding to immediate external conditions [3], thus constituting an important approach to environmental studies [18,19].
Despite the ecological importance of marine macroalgae, the use of metabolomics to characterize the response to pollutants is still unexplored [3]. Tracing several metabolites under stressful conditions can reveal new biomarkers and new biochemical pathways specific to macroalgae response to a highly dynamic environment. There is still a lot to discover about the physiology and metabolism of these organisms under stress and their interactions with environmental conditions. The aim of this research was to evaluate the metabolic profile and photosynthetic performance of the macroalga Gracilaria caudata when exposed to Cd2+. This species was selected mainly due to its wide distribution among the Brazilian coast, representing a potential target for locus research countrywide.

2. Materials and Methods

2.1. Seaweed Cultivation and Toxicologic Essays Set-Up

The red alga Gracilaria caudata (J.Agardh) Gurgel, J.N.Norris & Fredericq was obtained from the culture collection of algae, cyanobacteria and fungi at the Institute of Botany (CCIBt), Secretary of Infrastructure and Environment of São Paulo State, Brazil. The cultures were grown in natural seawater provided by the Marine Biology Center of São Paulo University. It was sterilized by pasteurization and filtration (0.45 µm) and maintained at 25 °C, pH 8 ± 0.3 and salinity 32 ± 1. The culture medium was enriched with Von Stosch media and exposed to a light cycle of 14:10 (70 µmol/m2/sLED lights) under constant aeration by orbital shaking at 150 RPM [20]. Each sample contained 30 mg of 2 cm algal apexes in 100 mL Erlenmeyer flasks filled up to 75 mL. The Cd2+ salt [3(CdSO4·8H2O)] (MERK) was used as a metal solution. The effect of cadmium on the growth rate, photosynthesis, and metabolism of the macroalgae was evaluated under 3 Cd2+ concentrations: the IC50 (3 mg/L) and two concentrations licensed by the CONAMA (Brazilian National Environment Council) for marine waters (0.04 mg/L) and for effluent discharge (0.2 mg/L) [21].

2.2. Determination of IC50

The growth rate of the macroalga G. caudata was measured by Daily Growth Rate (DGR), which was used to plot the dose–response curve and determine the IC50 after 7 days of exposure [22]. G. caudata was exposed to increasing concentrations of Cd (0 to 13 mg/L) with 5 replicates per treatment group. All data were assessed for normal distribution using Shapiro–Wilk statistical test to compare the obtained data and validated by the null test using Graph Prisma and R! software [23,24]. The Hill model was used to calculate the IC50 and ANOVA to determine the minimal exposure time.

2.3. Photosynthetic Performance

The photosynthetic performance of G. caudata was estimated through photosystem II chlorophyll fluorescence measured with the amplitude-modulated pulse fluorometer (PAM 2500, Walz, Effeltrich, Germany), as previously described [25]. Fast light curves were made in each replicate, and the parameters Fv/Fm, alpha, and maximum electron transfer rate (ETRmax) were obtained through the model described by T. Platt [26]. All results were compared in the one-way ANOVA statistical test using the Tukey test to compare groups of different concentrations in Graph Prisma. Five replicates per treatment group were used in this analysis.

2.4. Metabolomics

2.4.1. Sample Preprocessing

Seven replicates per experimental group were used. The biomass preprocessing was made by a polar and semi-polar metabolite extraction developed for the macroalgae [27,28]. The biomass was immediately frozen in liquid nitrogen (quenching), pulverized using a ball mixer mill (Retsch) for 1 min at 30 Hz, and macerated with 1 mL of methyl tert-butyl ether (MTBE) and methanol (MeOH) at 3:1 ratio (−20 °C). As an internal standard, 10 μL of the 10 μg/mL Ribitol standard (Sigma-Aldrich, St. Louis, MO, USA) was added to each sample and maintained in agitation (300 RPM) for 45 min at 4 °C. After 15 min of sonication; was added 650 μL of H2O:MeOH (4 °C at 3:1 ratio) and vortexed for 1 min. Then the samples were centrifuged at 20,000× g at 4 °C for 5 min (5340R, Eppendorf, Hamburg, Germany). The inferior phase of each sample was collected and dried using a speed-vac (Thermo Fischer, Waltham, MA, USA) at 25 °C. For normalization, the dried biomass weight of each remaining pellet was used.
Before the injection in the GC-MS, all samples were derivatized by silylation with N-Methyl-N-(trimethylsilyl) trifluoroacetamide (MSTFA) [29]. The extracted and dried samples were resuspended in 95 μL of methoxyamine hydrochloride/pyridine—MOX (0.25 mg/L) and incubated for 30 min at 60 °C in a thermal block, followed by the addition of 95 μL of MSTFA:pyridine (45:50) and incubated again for the same time and temperature. 10 μL of methyltridecanoate (MTD) in pyridine (573 µM) was added to the sample, and 200 μL of this solution was transferred to vials with inserts to be injected and analyzed by GC-MS.

2.4.2. GC-MS

The metabolic profile of G. caudata exposed to Cd2+ was evaluated by relative quantification using gas chromatography coupled with mass spectrometry (GC-MS). The chromatographic parameters followed the same protocol used for the derivatization method [29]. Two microliters were injected in a chromatograph (QP2010 Plus, Shimadzu, Inc., Kyoto, Japan) with the capillary column ZB-5MS (30 m × 250 μm internal diameter × 0.25 μm film thickness, Phenomenex, Torrance, CA, USA) coupled to a quadrupole mass spectrometer equipped with a source of electron impact ionization (EI) operating at 70 eV and 300 °C. The injection mode used was the spitless pulse (1.8 bars for 1 min) with the injector at 260 °C. The carrier gas used in the chromatograph was helium at a flow rate of 1 mL/min. The interface and quadrupole of the two devices were operated at 250 °C. For a more exploratory analysis, the mass spectrometer was operated in full scan mode for the range of components with a mass between 50–800 amu.

2.4.3. Metabolite Identification

The metabolites were first identified by the fragmentation pattern of each component obtained in the mass spectrometer; this process was made using the software AMDIS (Automated Spectral Mass Identification and Deconvolution System). AMDIS was used for peak deconvolution and alignment and putative identification (similarity index–SI > 75%) by the mass spectral library NIST 08 (National Institute of Standards and Technology). All identifications were confirmed by Kovats retention index (RI) regarding the Retention Time (RT) in the chromatographic column as a verification step to assure identifications are less restrictive made by AMDIS. The RI was manually calculated for each target suggested by AMDIS based on the RT obtained from the alkane standard (C9 to C30) analyzed under the same chromatographic conditions. The targets had their RI checked on ChemSpider and NIST Chemistry WebBook. In summary, the metabolites were only considered identified when the RI of a target suggested by AMIDS (using the fragmentation pattern) was similar to the RI calculated from the respective RT obtained from the gas chromatography.

2.4.4. Statistical Analyses

For a Gaussian distribution, a cubic root transformation and Pareto scaling were applied to the metabolomic data. To compare the treated groups, it was used unsupervised (Principal Component Analysis–PCA) and supervised (Orthogonal Projections to Latent Structures Discriminant Analysis–OPLS-DA) multivariate statistical analysis and a pathway analysis through MetaboAnalyst [30]. PCA compared the metabolic profile registered for all treatment groups in a more general analysis of Cd2+ exposure. OPLS-DA was applied to point out the pairwise differences between each Cd2+ treatment group and the control, listing target metabolites. For group separation, it was used a correlation limit of >|0.05| and a covariance of >|0.5| [31,32].
In the pathway analysis, through MetaboAnalyst, the reference organism used in the analysis was Chondrus crispus. The Globaltest algorithm and degree of centrality were used to measure the number of connections of each node [32]. This type of analysis provides the significance of the change (p < 0.05) and the pathway impact (significant > 0.1) relative to the relevance of the alteration in the representativeness of the metabolite on the pathway [28,32].

3. Results

3.1. Growth Rate Analysis

The IC50 of Cd2+ for the red macroalga G. caudata was 3 mg/L (12 μM) obtained after 48 h of exposure (Figure 1); therefore, this time was settled for all the next toxicological essays.

3.2. Cd2+ Exposure Affects Photosynthetic Performance

Beyond the exposure of G. caudata to 3 mg/L Cd2+ (IC50) over 48 h, two other metal concentrations were tested based on the guidelines of the Brazilian Environmental Council (CONAMA) for marine water (0.04 mg/L) and effluent discharge (0.2 mg/L) [21] with the same exposure time. After exposure to 0 (control), 0.04, 0.2 and 3 mg/L Cd2+, the ETRmax and IK were significantly altered under 0.2 and 3 mg/L, but at 0.04 mg/L, there was no significant change (Figure 2).
The photosynthetic performance was negatively affected by the presence of the Cd2+ in culture, causing a lower ETRmax and IK compared to the control. The concentration of 0.2 mg/L Cd2+ affected these parameters in the same proportions as the 3 mg/L, even being 15-fold less concentrated, which highlights the higher sensitivity of the chlorophyll fluorescence as a methodology to evaluate toxicity.

3.3. Metabolites Identified by GC-MS

A total of 50 metabolites were identified by AMDIS considering all Cd2+ exposure groups; however, through manual curation based on the Kovats index, 43 metabolites were filtered (Table S1). These metabolites are monosaccharides, carboxylic acids, and amino acids and were all present in the experimental group with the highest Cd2+ concentration (3 mg/L).

3.4. Cd2+ Affects Metabolic Profile in G. caudata

The variance observed by the PCA between the Cd2+ exposure groups was 50.5% (PC1: 29.9% and PC2: 20.65) (Figure 3). The complete separation of the metabolic profile between the Cd2+ exposure groups was observed only for the 3 mg/L compared to others. Comparing the control group with the lowest tested metal concentrations (0.04 and 0.2 mg/L), it was possible to notice occasional metabolite variation. However, the general metabolic profile was not considered significantly different from the control group.
To better understand the metabolites differences triggered by Cd2+ exposure in G. caudata, a supervised statistical analysis (OPLS-DA) was applied, comparing each Cd2+ treatment group with the control. Groups that did not have complete separation from the control in PCA had an invalid OPLS-DA result and, therefore, were not considered (Supplementary data—Figures S4 and S5) [33,34].
The OPLS-DA validated the difference between the 3 mg/L of Cd2+ and the control group, resulting in 33.25% for the T score and 11.4% for the Orthogonal score (Supplementary data—Figure S1). Together, they represent the cumulative variation of the difference between the groups, which resulted in a difference of 43.6%. The OPLS-DA was validated following the criteria of the variables Q2 and R2Y being higher than 0.5 and the permutation test with the same variables added to the p-value [33,35]. These variables were calculated by the model of Q2 = 0.82 and R2Y = 0.92, and in the permutation test as Q2 = 0.89 (p = 0.01) and R2Y = 0.92 (p = 0.01) (Supplementary data—Figure S1).
Twenty metabolites were considered to be the most responsible for the experimental group’s differences (Supplementary data–Figure S3 and Table S2), listed in Table 1, with its corresponding RT and the similarity index (SI) of the fragmentation pattern.
The unknown metabolites (RTs: 15.97 and 16.07) and those not found in the database (RTs:17.67, 20.40 and 22.94) were not included in the pathway analysis. Five out of 19 pathways identified were significantly altered by Cd2+ (3 mg/L) (Figure 4 and Table 2).
All metabolic pathways considered significantly altered (n = 5) by the presence of the Cd2+ (pathway impact > 0.1) were also shown to be significantly changed between groups (p < 0.05) (Table 2). In total, nine metabolites were detected in these five altered pathways, all of them accumulated during Cd2+ IC50 exposure. Increased concentrations of a metabolite can represent a greater activity of the described pathway or an accumulation of the metabolite due to some infeasibility downstream the pathway (absence of cofactors, malfunction of enzymes etc.).

4. Discussion

4.1. Growth and Photosynthesis Analysis

Despite much ecotoxicological analysis approaching red seaweed tolerance to metals, there is a high variation in methodology between these studies, which makes the comparison challenging. Many of these variations in methodology correspond to different culture conditions, chemical types of cadmium used, and forms of analysis, and these have an important influence on the calculation of the IC50 value. The IC50 value for G. caudata of 3 mg/L [Cd2+] (or 12 μM) is similar to that registered for another red macroalga, such as Gracilaria domingensis [22], and lower for G. tenuistipitata and Pterocladiella capillacea with the IC50 values three times lower [37,38,39]. A higher tolerance was verified in Hypnea musciformis which holds a IC50 higher than 50 μM [40].
Low photosynthesis rates in algae have been frequently registered for metal exposure [37,40,41,42,43,44,45]. Cadmium is also known to trigger inactivation, malfunction and lower cellular concentrations of Rubisco in vascular plants [46,47]. This enzyme malfunction occurs mainly due to the replacement of its metallic cofactor (Mg2+) by Cd2+, which hampers carbon dioxide/oxygen binding capacity, increasing the photorespiration [48]. Through an indirect mechanism, Rubisco is also affected by H2O2 accumulation due to ascorbate peroxidase inhibition by Cd2+ [49]. Cadmium also functions as a competitive inhibitor of Photosystem II at its calcium binding [43]. Therefore it inhibits photosynthesis on many levels. This can also explain ascorbate accumulation, also detected in this study.
In this study, a reduced photosynthesis rate under Cd2+ exposure was recorded in two tested concentrations (0.2 and 3 mg/L). The 0.2 mg/L of Cd2+, allowed by CONAMA for effluent discharge, despite being 15-fold lower than the IC50 determined for G. caudata (3 mg/L), caused the same damage to the algae photosynthesis rate (Figure 2). The lowest concentration tested (0.04 mg/L), legally permitted, did not show differences either from that observed for 0.2 and 3 mg/L or from the control group (Figure 2). These results highlight that Cd2+ pollution in the marine environment can be monitored through photosynthesis measurement in G. caudata as an effective and sensitive method. In this sense, organizations responsible for environmental legislation should consider these results to review the Cd2+ allowed in seawater and to guide public policy.
Metal concentrations measured directly from the water column do not reflect their real biologically available concentrations. In an artificial culture medium, only 0.18% of the amount of Cd2+ initially added to the culture was in fact, solubilized in the medium, and, thus, available to enter the alga cells. [22]. In natural seawater, cadmium tends to precipitate or be chelated to other materials in the water [22,50]. Its bioavailability is highly variable in the water column through changes in the marine environment, such as the presence of other metals, chelating agents, changes in pH etc. This highlights the importance of determining the presence of metallic pollutants using cytotoxicity analysis of known organisms since this concentration can be underestimated [51].

4.2. Impacted Metabolic Pathways

Several metabolites were differentially semi-quantified under the three Cd2+ concentrations tested. However, a complete impact on the pathway profiles was only detected under 3 mg/L (IC50). As a matter of higher confidence, we will restrain our discussion only on impacted pathway profiles.
The pathway with the highest impact was the metabolism of glycine, serine, and threonine (Table 2—pathway 5), which is correlated with the pathway of glyoxylate and dicarboxylate metabolism (Table 2—pathway 3) (Figure 5). A similar result was reported for G. domingensis exposed to Cd2+ [28]. The correlation between these two pathways in G. caudata could be explained by the increase in photorespiration rates (Figure 5). Glycine, serine and glyoxylate are intermediates in the conversion of phosphoglycolate to 3-phosphoglycerate in the photorespiration [52,53]. Studies with vascular plants have also demonstrated that higher concentrations of serine and glycine are important for activating photorespiration at the transcriptional level in plants [54,55]. Although not directly identified in this study, accumulation of phosphoglycolate has already been found in the vascular plant Brassica juncea exposed to cadmium [56]. Metal exposure has also been correlated with higher rates of photorespiration in plants [57], microalgae [58] and red macroalgae [28].
The exposure to Cd2+ was harmful to photosynthesis in G. caudata (Figure 2), and photorespiration can be a way to compensate for it to keep the Calvin-Benson cycle active (Figure 5); once the accumulation of phosphoglycolate can inactivate some of the downstream enzymes [59]. Photorespiration is also an alternative route for the continued production of carbohydrates in stressful conditions [60,61], like starch [62], which is also important for agar synthesis in Gracilaria species.
Rubisco is regulated by metallic ion availability, which influences its specificity to CO2/O2, thus controlling the equilibrium between photosynthesis and photorespiration. Cadmium is able to increase Rubisco affinity to O2 in plants [48], which may change the accumulation of glycine and glyoxylate, which are related to the maintenance of carbon flow under lower photosynthetic rate [63,64]. Higher activity of other important enzymes of glyoxylate metabolism in stress situations has been described in [63,65]. For these reasons, we suggest that when exposed to Cd2+, G. caudata, similarly to vascular plants, has a lower photosynthesis rate and, consequently, increased photorespiration (Figure 5).
Furthermore, the accumulation of citrate was also identified in this pathway (Table 2—pathway 3), which can be related to the demand for Krebs Cycle intermediates as previously reported for this species [28]. An outcome of that may be an increased synthesis of glutathione (GSH) and phytochelatins (PC) (Figure 5) through the transamination of the α-ketoglutarate [57]. GHS and PC are the main molecules capable of chelating metals in these organisms exposed to the metals [14].
The glyoxylate and dicarboxylate pathway (Table 2—pathway 3) can lead to an accumulation of triose-phosphates in the cytosol, increasing the synthesis of glycerol, which, when added to galactose, forms floridoside, also identified as an accumulated metabolite (Figure S6 and Table 1). This heteroside is highly accumulated during osmotic and heat stresses [66,67,68,69] and has been shown to be related to the cell-wall synthesis [70], an increased phenotype in Hypnea exposed to cadmium [40]. We suggest that floridoside also accumulates to increase of agar synthesis in G. caudata. β-oxidation can be important in this process, making glycerol available for floridoside synthesis and feeding glyoxylate cycle with Acetyl-COA (Figure 5). Floridoside was only detected in the experimental group exposed to Cd2+ (Figure S6); therefore, it may have an important role in oxidative stress. Increased polysaccharide accumulation results in cell-wall thickening, which works as a physical barrier and chelator of cadmium binding, decreasing its uptake, a common defense mechanism in vascular plants [71].
Ascorbate, the second most accumulated metabolite in this experiment (Table 2—pathway 4), is the most abundant antioxidant in plants, capable of quenching singlet oxygen, superoxide and H2O2 [53]. Thus, we suggest that G. caudata compensates for metal-induced oxidative stress with higher ascorbate synthesis (Figure 5). Other studies also identified higher ascorbate accumulation in plants exposed to cadmium [72,73] in stressed Klebsormidium [74]. In macroalgae, under metal exposure, increased activity of important antioxidant enzymes, such as superoxide dismutase and ascorbate peroxidase [13,75,76], have been reported. The simultaneous accumulation of ascorbates and L-galactose molecules, such as agar and floridoside, may be possible by the existence of a red algal exclusive ascorbate synthesis pathway as recently speculated by [77]; this study also corroborates importantly with this hypothesis.
The arginine and proline metabolism pathway (Table 2—pathway 1) (Figure 5) was also significantly altered. These amino acids frequently are accumulated during stress, as much as oligopeptides, such as glutathione and phytochelatins [14,76,78,79]. Proline is frequently associated with cellular stress also in red macroalgae [28,78,80,81,82,83,84], and it is related to cell osmotic balance in maize [85]. In Chlorella sp. exposed to several metals, intracellular concentrations of proline resulted in metal expulsion of the cell, reducing its intracellular concentration [83]. In plants, proline accumulation protects nitrate reductase activity and reduces oxidative damage of the photosystem II [86]. Therefore, we suggest that the accumulation of proline decreases intracellular metal toxicity to avoid oxidative stress in G. caudata. Arginine, although not directly identified in this study, occurs in the same metabolic pathway (Table 2—pathway 1). Arginine catabolism is an important source of nitrogen and a mechanism that assists the response to cellular stress. It is a precursor to polyamines and nitric oxide (NO) [87]. These compounds have important roles in the antioxidant process and have been identified in higher concentrations in plants and algae submitted to several stressful situations [88,89,90,91,92,93,94].
The accumulation of several amino acids represents a significant impact on the aminoacyl-tRNA synthetases pathway (Table 2—pathway 2) (Figure 5). The synthesis of gluthatione, phytochelatins and several antioxidant enzymes may be driving this process, as described in Arabidopsis (vascular plant) [95]. Plant transcriptomes often associate this pathway with non-essential metals exposure [96,97,98].

5. Conclusions

This study highlights the importance of proline, ascorbate, citrate, floridoside and their associated metabolic pathways (Table 2) in red macroalgae tolerance to metals. It significantly contributes to the metabolite library in rhodophytes and supports the establishment of Gracilaria caudata as a good bioindicator for marine environments. We showed that Cd2+ orchestrated an intense modification in carbon and amino acid pathways by intensifying photorespiration. It was detected that Cd2+ concentrations under IC50 were innocuous for the metabolome; only punctual alterations were detected; but could be perceived by PAM fluorescence, an invaluable and practical tool for field research.
We suggest a review of public policies regarding the currently permitted concentrations of Cd2+ in Brazilian marine environments determined by CONAMA [21]. The understanding of the metabolic changes triggered by Cd2+, together with the detection of the defense mechanisms performed by the macroalga, reflects an important diagnosis of the possible damage caused by pollution in the marine environment. Further studies are now facilitated using G. caudata as a bioindicator of cadmium pollution in the environment.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/phycology3020016/s1, Figure S1: OPLS-DA in G. caudata exposed to Cd2+ (0 and 3 mg/L). Data converted to cubic root and the Pareto scaling method. Orthogonal T-score: 11.4% and T-score: 33.2%; Figure S2: Validation tests for the OPLS-DA for the metabolic profile of G. caudata exposed to Cd2+ (0 and 3 mg/L). (A). 100-permutation test that resulted in variables of Q2 de 0.899 (p = 0.01) e R2Y 0.955 (p = 0.01); (B). graph bar for the calculated statistical variables of de Q2 = 0.823 e de R2Y = 0.923; Figure S3: S-plot of the metabolites present in the OPLS-DA analysis in G. caudata exposed to Cd2+ (0 and 3 mg/L). The metabolites are plotted with their respective covariance (y-axis) and correlation (X-axis) values. The upper right and lower left ends (black dashed areas) stand out as the most important metabolites for the separation of the groups (correlation > |0.05| and a covariance > |0.05|); Figure S4: Invalid OPLS-DA and validation tests in G. caudata exposed to Cd2+ (0 and 0.2 mg/L). Data converted to cubic root and the Pareto scaling—(A) OPLS-DA Orthogonal T-score: 28.8% and T-score [1]: 18.9%; (B) 100-permutation test Q2: 0.567 (p = 0.27) and R2Y: 0.997 (p = 0.47); (C) Model validation Q2: 0.45 and R2Y: 0.189; Figure S5: Invalid OPLS-DA and validation tests in G. caudata exposed to Cd2+ (0 and 0.04 mg/L). Data converted to cubic root and the Pareto scaling—(A) OPLS-DA Orthogonal T-score: 17.5% and T-score [1]: 22.6%; (B) 100-permutation test Q2: 0.696 (p = 0.08) and R2Y: 0.995 (p = 0.07); (C) Model validation Q2: 0.39 and R2Y: 0.226; Figure S6: Comparison of relative concentrations of the 19 metabolites (Table 1) found alternated in the metabolome of Gracilaria caudata exposed to Cd2+ (3 mg/L); Table S1: Total of metabolites detected by GC-MS in G. caudata listed according to the retention time (RT) and the calculated Kovats retention index (RI); Table S2: Complete list of the metabolites detected in the analysis (represented by their respective retention time) and their correlation and covariance values assigned by the OPLS DA test.

Author Contributions

All authors certify that they have participated sufficiently in the work to take public responsibility for the content. Conceptualization, L.A.-M., L.Z.-V. and P.C.; methodology, L.A.-M., L.Z.-V. and C.A.-L.; software, L.A.-M. and L.Z.-V.; validation, L.A.-M. and L.Z.-V.; formal analysis, L.A.-M., L.Z.-V. and C.A-L.; investigation, L.A.-M.; resources, L.Z.-V. and P.C.; data curation, L.A.-M. and L.Z.-V.; writing—original draft preparation, L.A.-M.; writing—review and editing, L.Z.-V., C.A.-L. and P.C.; visualization, L.A.-M. and P.C.; supervision, P.C.; project administration, P.C.; funding acquisition, P.C. All authors have read and agreed to the published version of the manuscript.

Funding

This work was supported by the National Coordination of High Education Personnel Formation Programs (CAPES) and The State of São Paulo Research Foundation (FAPESP) [grant number 2018/10216-4 and 2016/06931-4].

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

Any further data related to this study are available on request from the corresponding author.

Conflicts of Interest

The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript; or in the decision to publish the results.

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Figure 1. Daily Growth Rate (DGR) of the macroalga G. caudata under Cd2+ exposure. (A) Growth curves of Cd2+ exposure increasing concentrations groups (0 to 13 mg/L, indicated in gray boxes) and algal apexes weight variation for seven days. DGR for each treatment was obtained by the slope of the exponential phase of the growth curve, indicated as a blue line. (B) A dose–response curve showing the IC50 value calculated as 3 mg/L (dashed red line) that could be observed by 48 h of Cd2+ exposure. Shapiro–Wilk normality test was used for the comparison of the multiple data and ANOVA-one way comparing the result of each day.
Figure 1. Daily Growth Rate (DGR) of the macroalga G. caudata under Cd2+ exposure. (A) Growth curves of Cd2+ exposure increasing concentrations groups (0 to 13 mg/L, indicated in gray boxes) and algal apexes weight variation for seven days. DGR for each treatment was obtained by the slope of the exponential phase of the growth curve, indicated as a blue line. (B) A dose–response curve showing the IC50 value calculated as 3 mg/L (dashed red line) that could be observed by 48 h of Cd2+ exposure. Shapiro–Wilk normality test was used for the comparison of the multiple data and ANOVA-one way comparing the result of each day.
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Figure 2. Photosynthetic parameters obtained by a fast light curve after 48 h of Cd2+ exposure (G. caudata). ANOVA one-way—(A) Fv/Fm: p = 0.5217; (B) alpha: p = 0.4189; (C) ETR max: p < 0.0001 comparisons between different concentrations (Tukey): 0 vs. 0.2 (p = 0.019); 0 vs. 3 (p = 0.0470); 0.04 vs. 3 (p = 0.0003) and 0.2 vs. 3 (p = 0.0002); (D) Ik: p = 0.0006 (Tukey): 0 vs. 0.2 (p = 0.0019) and 0 vs. 3 (p = 0.0006). a, b, and ab (at C,D) highlights when there was or not a statistical difference between the experimental groups (ex. a is statically equal to a or ab but not b).
Figure 2. Photosynthetic parameters obtained by a fast light curve after 48 h of Cd2+ exposure (G. caudata). ANOVA one-way—(A) Fv/Fm: p = 0.5217; (B) alpha: p = 0.4189; (C) ETR max: p < 0.0001 comparisons between different concentrations (Tukey): 0 vs. 0.2 (p = 0.019); 0 vs. 3 (p = 0.0470); 0.04 vs. 3 (p = 0.0003) and 0.2 vs. 3 (p = 0.0002); (D) Ik: p = 0.0006 (Tukey): 0 vs. 0.2 (p = 0.0019) and 0 vs. 3 (p = 0.0006). a, b, and ab (at C,D) highlights when there was or not a statistical difference between the experimental groups (ex. a is statically equal to a or ab but not b).
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Figure 3. PCA of the metabolic profile of G. caudata exposed to Cd2+ (0, 0.04, 0.2 and 3 mg/L). Data converted to cube root and the Pareto scaling method. From MetaboAnalyst.
Figure 3. PCA of the metabolic profile of G. caudata exposed to Cd2+ (0, 0.04, 0.2 and 3 mg/L). Data converted to cube root and the Pareto scaling method. From MetaboAnalyst.
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Figure 4. Metabolic pathways altered in G. caudata exposed to Cd2+ (3 mg/L). The 20 metabolites significantly altered by Cd2+ (Table 1) pointed to five pathways altered by these detected changes. The pathways are arranged according to the scores from the enrichment analyses [y axis: −ln (p)] (also displayed in red scale, coloring the bullets) and topology (x-axis: pathway impact, i.e., the sum of the detected alterations normalized by the sum of the importance represented by each metabolite in its corresponding pathway – also displayed with the bullets sizes) [36].
Figure 4. Metabolic pathways altered in G. caudata exposed to Cd2+ (3 mg/L). The 20 metabolites significantly altered by Cd2+ (Table 1) pointed to five pathways altered by these detected changes. The pathways are arranged according to the scores from the enrichment analyses [y axis: −ln (p)] (also displayed in red scale, coloring the bullets) and topology (x-axis: pathway impact, i.e., the sum of the detected alterations normalized by the sum of the importance represented by each metabolite in its corresponding pathway – also displayed with the bullets sizes) [36].
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Figure 5. Illustration of the macroalga cell exposed to Cd 2+ (3 mg/L) demonstrating all the metabolic networks and processes related to the altered pathways detected in this study. The numbers represent the pathways identified (Table 2), and all are associated with the displayed cell process related to the cellular response to the oxidative stress caused by the metal.
Figure 5. Illustration of the macroalga cell exposed to Cd 2+ (3 mg/L) demonstrating all the metabolic networks and processes related to the altered pathways detected in this study. The numbers represent the pathways identified (Table 2), and all are associated with the displayed cell process related to the cellular response to the oxidative stress caused by the metal.
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Table 1. Important metabolites for separating two experimental groups of G. caudata exposed to Cd2+ (0 and 3 mg/L) followed by their respective RT and similarity index (SI). The metabolites marked with asterisk (*) were not included in the pathway analysis.
Table 1. Important metabolites for separating two experimental groups of G. caudata exposed to Cd2+ (0 and 3 mg/L) followed by their respective RT and similarity index (SI). The metabolites marked with asterisk (*) were not included in the pathway analysis.
IDRTSI
Acetic acid6.5596
Leucine7.7597
Norleucine8.0897
Valine8.5896
Serine9.2195
Threonine9.7294
Glycine9.8795
Decanoic Acid10.0076
Malonic acid11.2588
Erythritol12.4990
Proline12.7286
Arabinonic Acid15.8875
Unknown *15.97-
Carboxylic Acid *16.0791
Citric acid16.2692
Ascorbic acid17.4089
Talose *17.6787
β-D-Glucopyranose20.0287
2-α-D-galactopyranosil Glycerol (Floridoside) *20.4092
(2,3-Diphenylcyclopropyl) methyl phenyl sulfoxide *22.9487
Table 2. Altered metabolic pathways in G. caudata exposed to Cd2+ (3 mg/L).
Table 2. Altered metabolic pathways in G. caudata exposed to Cd2+ (3 mg/L).
Metabolic PathwayTotal Metabolites of the PathwayDetected Metabolitesp-ValuePathway Impact
1 Metabolism of arginine and proline31Proline0.0020.11688
2 Aminoacyl-tRNA biosynthesis48Serine, Proline, Threonine, Glycine, Valine and Leucine0.0020.16667
3 Glyoxylate and dicarboxylate metabolism31Acetic Acid, Citric acid, Serine and Glycine<0.0010.21683
4 Ascorbate and aldarate metabolism17Ascorbic acid0.0010.23016
5 Metabolism of glycine, serine and threonine28Serine, Glycine and Threonine0.0020.43897
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Araujo-Motta, L.; Alves-Lima, C.; Zambotti-Vilella, L.; Colepicolo, P. Metabolome of Cadmium Stressed Gracilaria caudata (Rhodophyta). Phycology 2023, 3, 255-269. https://doi.org/10.3390/phycology3020016

AMA Style

Araujo-Motta L, Alves-Lima C, Zambotti-Vilella L, Colepicolo P. Metabolome of Cadmium Stressed Gracilaria caudata (Rhodophyta). Phycology. 2023; 3(2):255-269. https://doi.org/10.3390/phycology3020016

Chicago/Turabian Style

Araujo-Motta, Luiza, Cicero Alves-Lima, Leonardo Zambotti-Vilella, and Pio Colepicolo. 2023. "Metabolome of Cadmium Stressed Gracilaria caudata (Rhodophyta)" Phycology 3, no. 2: 255-269. https://doi.org/10.3390/phycology3020016

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