Next Article in Journal / Special Issue
Enzymatic Screening of β-Amyloid Precursor Protein-Based Substrates
Previous Article in Journal
Category Theory in Chemistry
Previous Article in Special Issue
Synthesis and Spectral, Thermal and Antimicrobial Investigation of Mixed Ligand Metal Complexes of N-Salicylidene Aniline and 1,10-Phenanthroline
 
 
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Communication

The Effect of Strain on the Aromatic Character of Infinitene

by
Maurizio D’Auria
Dipartimento di Scienze, Università della Basilicata, V.le dell’Ateneo Lucano 10, 85100 Potenza, Italy
Compounds 2023, 3(2), 336-340; https://doi.org/10.3390/compounds3020025
Submission received: 4 January 2023 / Revised: 18 March 2023 / Accepted: 13 April 2023 / Published: 18 April 2023
(This article belongs to the Special Issue Feature Papers in Compounds (2022–2023))

Abstract

:
Infinitene was synthesized in a previous study in 2021, and the molecule showed high strain energy. It was not clear how the strain affected the aromatic character of the molecule. To discuss this problem, the aromatic properties of dodecacene, [12]circulene, and infinitene have been studied. The structures of these compounds have been optimized at the DFT/B3LYP/6-311G + (d,p) level of theory, and the energy of the π orbitals has been used to determine the D’ index of the aromaticity. D′ for dodecacene, [12]circulene, and infinitene were 1.45, 1.45, and 1.50, respectively, showing that infinitene is an aromatic compound but with a lower aromatic character, which is in agreement with the observed strain.

1. Introduction

Aromaticity has been one of the most important issues in organic chemistry since its foundation. The definition of aromaticity has changed over the years, from “aromatic systems are monocarbocyclic, conjugated molecules containing (4n + 2) out-of-plane π electrons” to “cyclic systems having a large resonance energy in which all the atoms in the ring take part in a single conjugated system” and finally to “cyclic diatropic systems with a positive calculated Dewar RE in which all the ring atoms are involved in a single conjugated system” [1]. More recently, commonly used aromaticity rules have been subjected to a significant revision showing the limitations of the proposed approaches [2,3]. Several approaches have been used in order to determine the aromatic character of a compound, including empirical resonance energy (ERE), aromatic stabilization energy (ASE), bird index, harmonic oscillator model of aromaticity (HOMA), and nucleus-independent chemical shift (NICS), all of which have been proposed [4,5,6,7,8,9,10,11,12,13,14]. An important role in the evaluation of the aromatic character was played by the strain effect in tested compounds [15,16,17].
Some aromatic indices failed in our estimation on the strain in an aromatic compound. For example, in the case of the compounds 1 and 2 (Figure 1), where 2 did not show a planar structure, HOMHED (harmonic oscillator model of heterocyclic electron delocalization) [18] is the same (0.88) for both compounds, while D′ index [19] presented 1.40 for 1 and 1.45 for the compound 2, showing that 1 is more aromatic than 2.
D′ index (Equation (1)) is the evolution of a previously reported aromatic index [20] and it is an index related to the energy of occupied π orbitals.
π 1 + 2 n π 1 π n 0 represents the energy difference between the π orbitals for the parent compound (benzene), while π 1 + 2 n π 1 π n is the same value for a generic aromatic compound. a 0 is the number of atoms in the molecule participating in the formation of π orbitals in the reference compound, and a is the number of atoms in the molecule participating in the formation of π orbitals in the tested molecule.
D = π 1 + 2 n π 1 π n 0 π 1 + 2 n π 1 π n × a a 0
Recently, infinitene 3 (Figure 2) was synthesized [21], and this compound showed a large strain energy (60.2 kcal mol−1) (on the origin of name cfr. [22]). NICS determination showed a benzenoid ring with a good aromatic character as well as other rings with very low aromatic values. The Möbius rule for twisted annulene was in agreement for a non-aromatic compound. However, calculations are in agreement with an aromatic compound [23]. The spectroscopic properties, such as excited state dynamics, of infinitene have been reported [24,25,26].
In this article, we present our results on the calculation of the aromaticity on infinitene with the aim to provide an estimation of the effect of strain considering linear twelve condensed aromatic ring, dodecacene, cyclic [12]circulene (Figure 3) and [12]infinitene.

2. Materials and Methods

Gaussian09 has been used for the discussion of computed geometries [27]. All the computations (Supplementary Materials) were based on the density functional theory (DFT) [28] by using the B3LYP hybrid xc functional [29]. Geometry optimizations from the Gaussian09 program have been obtained at the B3LYP/6-311G + (d,p) level of approximation. Geometry optimizations were performed with default settings on geometry convergence (gradients and displacements), integration grid, and electronic density (SCF) convergence. Redundant coordinates were used for the geometry optimization as produced by the Gaussian09 program. Analytical evaluation of the energy second derivative matrix with respect to Cartesian coordinates (Hessian matrix) at the B3LYP/6-31G + (d,p) level of approximation confirmed the nature of minima on the energy surface points associated with the optimized structures.

3. Results and Discussion

Calculations in order to optimize the structures have been performed at the DFT/B3LYP/6-311G + (d,p) level of theory. Figure 4 presents the HOMOs and LUMOs of dodecacene, [12]circulene, and infinitene.
It is noteworthy that the HOMO and LUMO of infinitene do not correspond to those reported in a previous article, where the structures were optimized at the PBEO/6-311G + (d,p) level of theory [21]. The optimized structure performing TD calculations obtained at the DFT/B3LYP/6-311G + (d,p) level confirmed the observed differences. An attempt to use the PBEO functional used in calculations did not modify the observed differences. Table 1 presents the energy of π orbitals. These values were used to calculate the D′ index as reported in Equation (1).
On the basis of the energy of π orbitals, it is possible to calculate the value of D′ (Table 1). Dodecacene and [12]circulene showed the same value, 1.45, while infinitene showed a value of 1.50. Based on these results, we are able to make the following considerations: (1) all the compounds are aromatics; (2) the large ring present in [12]circulene does not alter the aromatic character of the molecule; (3) the large strain present in the molecule can modify the aromatic character and the molecule shows a lower aromatic character; and (4) the difference between 1.45 and 1.50 accounted for the lower aromatic character.

4. Conclusions

The results described above showed that D′ index can be used in order to determine the aromatic character of strained molecules. We have shown that infinitene is an aromatic compound, which is in agreement with another computational work [23], but its strained structure reduces the aromaticity of the molecule. At the moment, the aromaticity of infinitene is similar to that of [6]annulene, a very strained molecule [19].

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/compounds3020025/s1, DFT energies and xyz coordinates for optimized structures.

Funding

This research received no external funding.

Data Availability Statement

Available data can be found in the Supplementary Materials of this article.

Conflicts of Interest

The author declares no conflict of interest.

References

  1. Garratt, P.J. Aromaticity; John Wiley & Sons: New York, NY, USA, 1986; p. 55. [Google Scholar]
  2. Solà, M. Aromaticity rules. Nat. Chem. 2022, 14, 585–590. [Google Scholar] [CrossRef] [PubMed]
  3. Solà, M. Why aromaticity is a suspicious concept? Why? Front. Chem. 2017, 5, 22. [Google Scholar] [CrossRef] [PubMed]
  4. Cook, M.J.; Katritzky, A.R.; Linda, P. Aromaticity of heterocycles. In Advances in Heterocyclic Chemistry; Katritzky, A.R., Boulton, A.J., Eds.; Academic Press: New York, NY, USA, 1974; Volume 17, pp. 255–356. [Google Scholar]
  5. Cyransky, M.K. Energetic Aspects of Cyclic Pi-Electron Delocalization: Evaluation of the Methods of Estimating Aromatic Stabilization Energies. Chem. Rev. 2005, 105, 3773–3811. [Google Scholar] [CrossRef]
  6. Wodrich, M.D.; Wannere, C.S.; Mo, Y.; Jarowski, P.D.; Houk, K.N.; von Ragué Schleyer, P. The Concept of Protobranching and Its Many Paradigm Shifting Implications for Energy Evaluations. Chem. Eur. J. 2007, 13, 7731–7744. [Google Scholar] [CrossRef] [PubMed]
  7. Clesielski, A.; Stepień, D.K.; Dobrowolski, M.A.; Dobrzycki, L.; Cyranski, M.K. On the aromatic stabilization of benzenoid hydrocarbons. Chem. Commun. 2012, 48, 10129–10131. [Google Scholar] [CrossRef] [PubMed]
  8. Bird, C.W. A new aromaticity index and its application to five-membered ring heterocycles. Tetrahedron 1985, 41, 1409–1414. [Google Scholar] [CrossRef]
  9. Bird, C.W. The application of a new aromaticity index to six-membered ring heterocycles. Tetrahedron 1986, 42, 89–92. [Google Scholar] [CrossRef]
  10. Bird, C.W. Heteroaromaticity.8. the influence of N-oxide formation on heterocyclic aromaticity. Tetrahedron 1993, 49, 8441–8448. [Google Scholar] [CrossRef]
  11. Kruszewski, J.; Krygowski, T.M. Definition of aromaticity basing on the harmonic oscillator model. Tetrahedron Lett. 1972, 13, 3839–3842. [Google Scholar] [CrossRef]
  12. Krygowski, T.M. Crystallographic studies of inter- and intramolecular interactions reflected in aromatic character of π-electron systems. J. Chem. Inf. Comput. Sci. 1993, 33, 70–78. [Google Scholar] [CrossRef]
  13. Von Ragué Schleyer, O.; Maerker, C.; Dransfeld, A.; Jiao, H.; von Eikema Hommes, N.J.R. Nucleus-Independent Chemical Shifts:  A Simple and Efficient Aromaticity Probe. J. Am. Chem. Soc. 1996, 118, 6317–6318. [Google Scholar] [CrossRef] [PubMed]
  14. Corminboeuf, C.; Heine, P.C.; Seifert, G.; von Ragué Schleyer, P.; Weber, J. Induced magnetic fields in aromatic [n]-annulenes—Interpretation of NICS tensor components. Phys. Chem. Chem. Phys. 2004, 6, 273–276. [Google Scholar] [CrossRef]
  15. Krygowski, T.M.; Cyranski, M.K. Structural Aspects of Aromaticity. Chem. Rev. 2001, 101, 1385–1419. [Google Scholar] [CrossRef]
  16. Stanger, A. What is … aromaticity: A critique of the concept of aromaticity—Can it really be defined? Chem. Commun. 2009, 1939–1947. [Google Scholar] [CrossRef] [PubMed]
  17. Jagadeesh, M.N.; Makur, A.; Chandrasekhar, J. The interplay of angle strain and aromaticity: Molecular and electronic structure of [0n]paracycliphanes. J. Mol. Model. 2000, 6, 226–233. [Google Scholar] [CrossRef]
  18. Frizzo, C.P.; Martins, M.A.P. Aromaticity in heterocycles: New HOMA index parametrization. Struct. Chem. 2012, 23, 375–380. [Google Scholar] [CrossRef]
  19. D’Auria, M. The use of D’ index in the determination of the aromatic character of organic compounds. Comparison with HOMHED and NICS. ChemistrySelect 2020, 5, 2816–2823. [Google Scholar] [CrossRef]
  20. D’Auria, M. An approach to the aromaticity based on the energy of the occupied orbitals. Curr. Org. Chem. 2016, 20, 971–983. [Google Scholar] [CrossRef]
  21. Krzeszewski, M.; Ito, H.; Itami, K. Infinitene: A helically twisted figure-eight [12]circulene. J. Am. Chem. Soc. 2022, 144, 862–871. [Google Scholar] [CrossRef]
  22. Martínez, A.; Zeeshan, M.; Zaidi, A.; Sliwka, H.-R.; Naqvi, K.R.; Partali, V. On infinitenes—Reliable calculation of λ∞ and molecular modeling of lemniscate structured carotenoids. Comput. Theor. Chem. 2018, 1125, 133–141. [Google Scholar] [CrossRef]
  23. Orozco-Ic, M.; Valiev, R.R.; Sundholm, D. Non-intersecting ring currents in [12]infinitene. Phys. Chem. Chem. Phys. 2022, 24, 6404–6409. [Google Scholar] [CrossRef] [PubMed]
  24. Lu, C.; Chen, P.; Sheng, H.; Li, C.; Jingang Wang, J. Physical mechanism on linear spectrum and nonlinear spectrum in double helical carbon nanomolecule–infinitene. Spectrochim. Acta Part A Mol. Biomol. Spectrosc. 2022, 282, 121674. [Google Scholar] [CrossRef] [PubMed]
  25. Freixas, V.M.; Tretiak, S.; Fernandez-Alberti, S. Infinitene: Computational Insights from Nonadiabatic Excited State Dynamics. J. Phys. Chem. Lett. 2022, 13, 8495–8501. [Google Scholar] [CrossRef] [PubMed]
  26. Monaco, G.; Zanasi, R.; Summa, F.F. Magnetic Characterization of the Infinitene Molecule. J. Phys. Chem. A. 2022, 126, 3717–3723. [Google Scholar] [CrossRef]
  27. Frisch, M.J.; Trucks, G.W.; Schlegel, H.B.; Scuseria, G.E.; Robb, M.A.; Cheeseman, J.R.; Scalmani, G.; Barone, V.; Mennucci, B.; Petersson, G.A.; et al. Gaussian 09, Revision A.1; Gaussian, Inc.: Wallingford, CT, USA, 2009. [Google Scholar]
  28. Parr, R.G.; Yang, W. Density Functional Theory of Atoms and Molecules; Oxford University Press: Oxford, UK, 1989. [Google Scholar]
  29. Becke, A.D. Molecular excitation energies to high-lying bound states from time-dependent density-functional response theory: Characterization and correction of the time-dependent local density approximation ionization threshold. J. Chem. Phys. 1993, 98, 5648–5652. [Google Scholar] [CrossRef]
Figure 1. Compounds 1 and 2.
Figure 1. Compounds 1 and 2.
Compounds 03 00025 g001
Figure 2. Infinitene 3.
Figure 2. Infinitene 3.
Compounds 03 00025 g002
Figure 3. Dodecacene (left) and [12]circulene (right).
Figure 3. Dodecacene (left) and [12]circulene (right).
Compounds 03 00025 g003
Figure 4. HOMOs and LUMOs of dodecacene (left), [12]circulene (center), infinitene (right).
Figure 4. HOMOs and LUMOs of dodecacene (left), [12]circulene (center), infinitene (right).
Compounds 03 00025 g004
Table 1. Energy of π orbitals of dodecacene, [12]circulene, and infinitene [eV].
Table 1. Energy of π orbitals of dodecacene, [12]circulene, and infinitene [eV].
OrbitalDodecacene[12]CirculeneInfinitene
π1−11.34−11.66−11.10
π2−11.23−11.58−11.03
π3−11.05−11.58−10.44
π4−10.80−11.42−9.74
π5−10.48−11.42−9.68
π6−10.10−10.99−9.23
π7−9.66−10.99−9.13
π8−9.15−8.97−9.04
π9−8.73−8.79−8.76
π10−8.60−8.79−8.51
π11−8.60−8.79−8.24
π12−8.40−8.79−8.16
π13−8.14−8.25−7.91
π14−8.00−8.25−7.83
π15−7.56−7.45−7.30
π16−7.42−7.45−7.17
π17−7.38−7.38−7.00
π18−6.95−6.47−6.91
π19−6.48−6.18−6.18
π20−6.46−6.18−6.18
π21−6.43−4.70−5.88
π22−5.85−4.70−5.68
π23−5.23−4.32−5.47
π24−4.59−11.66−5.05
π25−4.01
D1.451.451.50
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content.

Share and Cite

MDPI and ACS Style

D’Auria, M. The Effect of Strain on the Aromatic Character of Infinitene. Compounds 2023, 3, 336-340. https://doi.org/10.3390/compounds3020025

AMA Style

D’Auria M. The Effect of Strain on the Aromatic Character of Infinitene. Compounds. 2023; 3(2):336-340. https://doi.org/10.3390/compounds3020025

Chicago/Turabian Style

D’Auria, Maurizio. 2023. "The Effect of Strain on the Aromatic Character of Infinitene" Compounds 3, no. 2: 336-340. https://doi.org/10.3390/compounds3020025

Article Metrics

Back to TopTop