Basic Statistics
Measure | Value |
---|---|
Filename | CerB79_reverse_paired.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 18598712 |
Sequences flagged as poor quality | 0 |
Sequence length | 50-150 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGGGG | 705 | 0.0 | 25.719158 | 1 |
CGGGCAT | 5195 | 0.0 | 25.505896 | 1 |
AATCCGC | 5615 | 0.0 | 21.23215 | 5 |
TCCGCTC | 5675 | 0.0 | 19.902216 | 7 |
CCGCTCT | 6435 | 0.0 | 16.793276 | 8 |
CGCTCTC | 6660 | 0.0 | 16.330618 | 9 |
CAATCCG | 8300 | 0.0 | 15.371654 | 4 |
ATCCGCT | 8790 | 0.0 | 15.070128 | 6 |
CGGGGGG | 1725 | 0.0 | 14.554119 | 1 |
CGGGGAT | 4965 | 0.0 | 13.7651 | 1 |
CGCGTAT | 1270 | 0.0 | 13.728048 | 1 |
CGCGGAT | 1970 | 0.0 | 13.452093 | 1 |
AGATCGG | 10930 | 0.0 | 13.33275 | 140-144 |
CGCGGCT | 1565 | 0.0 | 12.922787 | 1 |
CGGGAAT | 8755 | 0.0 | 12.107654 | 1 |
CGCCCTT | 4915 | 0.0 | 11.918683 | 1 |
CCGGGAT | 5715 | 0.0 | 11.714602 | 1 |
CGGGGAC | 3115 | 0.0 | 11.193979 | 1 |
CGGGCCC | 1010 | 6.381015E-9 | 11.047681 | 1 |
CGCGGTT | 1800 | 0.0 | 10.848209 | 1 |