FastQCFastQC Report
Wed 13 Feb 2019
CerC17_forward_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerC17_forward_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20411892
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG5455.456968E-1219.5589831
CTCGAAC113050.017.915371
CCCGGCT20050.014.8862891
CGAACAT107850.014.4961963
CGGGGGG15400.014.3051531
CCCGGTT95250.014.2501651
CGCCTCT55950.013.8445211
CGCGGTT21100.013.8087031
CGCGCAT11700.013.3625181
GGTTAAC129950.013.0152411
CGGGCTT38750.012.6540311
CGGGTAT31350.012.2407411
CGCGTGT9451.6716513E-912.0320521
CGGGGCG9051.1330485E-811.7786141
TCGAACA125600.011.7686112
CGGGGGT15200.011.6882081
AGATCGG109250.011.670326140-144
CGGGGAT45250.011.3074691
CGCGTAT9452.1471351E-811.2800481
CCCGGAT47900.011.2753381