FastQCFastQC Report
Wed 13 Feb 2019
CerA78_forward_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerA78_forward_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21951933
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG5800.023.2415891
CTCGCTA57650.013.6601989
CGGGCAT61100.012.77296451
CGCCCTT56250.011.4778111
TCGCTAG46400.011.4677069
CCCGCTT38150.010.9723011
GGAAAAT522000.010.3567781
CGGGTAT45600.010.268791
CGGGGGG20800.010.2328851
CGCACAT36150.010.20552351
AGATCGG142000.010.073301140-144
CGGGGAT60150.09.791
GGGAAAT299350.09.7646841
CCGGGAT72400.09.7014541
CGGGCAC33900.09.6271641
CCCGCAT33400.09.5588641
CGGGCCC11956.659502E-89.4993151
CGCGGGA13454.2346073E-99.4949011
GCCCGAT40350.09.4949011
CGCCCAT59400.09.4358461