FastQCFastQC Report
Wed 13 Feb 2019
CerC17_reverse_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerC17_reverse_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20411892
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG5400.022.0006311
CGGGGAT45000.017.7040391
CTCGAAC109750.017.7019141
CCCGGTT90200.016.425151
CGCGGTT21600.015.8533961
CGCCTCT59550.014.4345521
CGAACAT108000.013.7148153
AGATCGG105250.012.8597765140-144
CGGGCAC24900.012.62970351
GGTTAAC135050.012.6262751
CGCGTAT10555.456968E-1212.5858091
TCGAACA120350.012.4264662
CTCGAAT184000.012.2297621
CGGGGAG78500.012.1073541
CGGGCGT8809.587893E-911.91210651
CGCGCGT4150.0037132311.7877241
CGCCCTT71750.011.6879771
GATACGA100650.011.5926777
CGGGCTT41050.011.5764591
CGCTGAT45900.011.5712661