FastQCFastQC Report
Wed 13 Feb 2019
CerD11_forward_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerD11_forward_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25168657
Sequences flagged as poor quality0
Sequence length50-150
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG4507.2759576E-1222.095721
CGCCTCT62200.019.182781
CTCGAAC125100.014.7039861
AGTCGCT98750.014.3841946
CGCGTAT12100.014.0870011
CGCCCCT29500.013.9636391
CCCGCAT42550.013.8538721
CGCGCAT11200.013.3166181
GGTTAAC131900.012.9228741
GTCGCTT112700.012.8557947
CGCGCCC9109.313226E-1012.4873771
AATCCGC54800.012.0529975
CGAACAT138950.011.7560643
TCGAACA146850.011.4138132
CCCGGCT23450.011.2060231
CCGCATG50400.011.1324112
TCGGCTT144300.011.074112
AGATCGG103600.010.82731140-144
CGGGTAT32250.010.7909351
CGCATGC49300.010.6604973