FastQCFastQC Report
Wed 13 Feb 2019
CerA58_reverse_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerA58_reverse_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22885141
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG7100.022.5231911
CTCGCTA67650.016.5429959
CGCGTTT23350.015.1860111
AGATCGG161000.013.125861140-144
CGGGCAT61400.012.2297011
CGCGTAT15650.011.9952651
CGGGAAT124950.011.4071721
GGAAAAT522200.011.343921
TCGCTAG49950.011.2721199
CGCGTCT13650.011.2059961
TCTCGCT104850.011.0051438
CGCGGGA12701.8189894E-1110.9493081
CGCGAAT30050.010.8746131
CGCCAAT97150.010.8067371
CGCCCTT59450.010.7596071
CGGGGAT59000.010.4881381
GCCCGAT39200.010.464691
CAGATCG155250.010.305192140-144
CGCCCAT65800.010.2495851
CGGGGAC57750.010.2335751