FastQCFastQC Report
Wed 13 Feb 2019
CerD11_reverse_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerD11_reverse_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25168657
Sequences flagged as poor quality0
Sequence length50-150
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG5600.032.3631061
CTCGAAC125050.017.4471911
CGCCTCT64100.016.3116571
CGCGTTT20900.016.0088391
CGGGGAT57300.014.2329881
CGCGCAT9005.456968E-1213.941031
CGAACAT137750.013.6593763
TCGAACA140500.013.5441332
CCCGCAT46350.013.5349811
AGTCGCT90750.013.3617426
CCCGTCT37850.012.891311
CGGGGGG17200.012.5631381
CTCGAAT203450.012.1628551
GGTTAAC135100.012.1248791
AATCCGC54050.011.9907415
CGGGAAT93600.011.84093951
AGATCGG102300.011.808895140-144
CGCCCCA30100.011.5789291
CGCGTAT12309.094947E-1211.3341711
GTCGCTT110700.011.3314247