FastQCFastQC Report
Wed 13 Feb 2019
CerC38_reverse_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerC38_reverse_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17567580
Sequences flagged as poor quality0
Sequence length50-150
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAACTTGTAACTTACTTAAAGAGTGCGAACACCCAACATATTATGCAT182250.10374223427472651No Hit
CAGAAACTGGGGAAACCAAAAGAAAAAGACGTGGATGCAGGAAGTTCCGG177650.10112377458932875No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG3350.033.3389851
CTCGAAC93400.028.6986581
CGCCTCT40250.027.0542771
CGCGGTT16350.026.8967651
CGAACAT96000.025.0802783
TCGAACA101500.022.9698242
CGGGGGG10600.021.731281
CGCGCAT9000.021.7166481
CGCGTAT7900.019.4389511
AGATCGG92650.018.89906140-144
CGGGCGT7050.018.8122921
GCGGGGG12500.018.4281251
CGCGCCT8150.017.9861771
CGGGCCC5902.3646862E-1117.7466551
CGGGGAT29250.017.4210471
GATACGA105800.017.018497
CGGGCTT24650.016.7075331
CGGGGCG6709.094947E-1216.6694931
CGCCCCT16450.016.549161
CCCGCAT13100.016.5183871