FastQCFastQC Report
Wed 13 Feb 2019
CerA21_reverse_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerA21_reverse_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21167042
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG5550.025.0916521
AGATCGG142300.012.651171140-144
CGGGGGG17700.011.8015821
CGGGCCT29150.011.7044151
CGGGGAT59300.011.6244581
CGCACAT35650.011.5235091
CTCGCTA50700.011.2587829
CGCGTTT21200.011.1669681
CGCGGAT22650.011.0669141
CGGGCAT58150.011.0161631
CGCCCTT51850.010.6089051
GGAAAAT481600.010.5976541
CCCGGCT27150.010.5149271
CGCCCAT58600.010.4562821
CCCGAAT74350.010.3952331
CCCGACT41150.09.9833061
CCCGGTT57700.09.653981
CCGGGTT57850.09.6289481
CGCCCCT36250.09.6040461
CTCGGAT84900.09.5135481