FastQCFastQC Report
Wed 13 Feb 2019
CerC25_forward_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerC25_forward_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19935070
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG5950.035.827461
CTCGAAC98500.023.7340241
CGAACAT101200.021.0645663
CGCCTCT50750.019.1821061
TCGAACA114500.018.2454072
CGCGGTT17100.017.8683341
CGGGGCG7700.016.6109141
CGCGCCC7051.6370905E-1116.1265931
GGTTAAC145850.015.6390491
CGGGGAT37050.014.9595361
GCGGGTT23800.014.3309841
CCCGGCT17000.013.7935721
AGTCGCT92750.013.4837446
AGATCGG92250.013.348028140-144
CCCATAC128950.013.2250168
CGCGCAT10403.6379788E-1212.9817131
CGCCCCT21900.012.9785931
GGCGCCC25850.012.6447152
GTCGCTT100850.012.3303077
CGCGTAT8807.490598E-912.1121241