Basic Statistics
Measure | Value |
---|---|
Filename | CerC25_forward_paired.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 19935070 |
Sequences flagged as poor quality | 0 |
Sequence length | 50-150 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGGGG | 595 | 0.0 | 35.82746 | 1 |
CTCGAAC | 9850 | 0.0 | 23.734024 | 1 |
CGAACAT | 10120 | 0.0 | 21.064566 | 3 |
CGCCTCT | 5075 | 0.0 | 19.182106 | 1 |
TCGAACA | 11450 | 0.0 | 18.245407 | 2 |
CGCGGTT | 1710 | 0.0 | 17.868334 | 1 |
CGGGGCG | 770 | 0.0 | 16.610914 | 1 |
CGCGCCC | 705 | 1.6370905E-11 | 16.126593 | 1 |
GGTTAAC | 14585 | 0.0 | 15.639049 | 1 |
CGGGGAT | 3705 | 0.0 | 14.959536 | 1 |
GCGGGTT | 2380 | 0.0 | 14.330984 | 1 |
CCCGGCT | 1700 | 0.0 | 13.793572 | 1 |
AGTCGCT | 9275 | 0.0 | 13.483744 | 6 |
AGATCGG | 9225 | 0.0 | 13.348028 | 140-144 |
CCCATAC | 12895 | 0.0 | 13.225016 | 8 |
CGCGCAT | 1040 | 3.6379788E-12 | 12.981713 | 1 |
CGCCCCT | 2190 | 0.0 | 12.978593 | 1 |
GGCGCCC | 2585 | 0.0 | 12.644715 | 2 |
GTCGCTT | 10085 | 0.0 | 12.330307 | 7 |
CGCGTAT | 880 | 7.490598E-9 | 12.112124 | 1 |