FastQCFastQC Report
Wed 13 Feb 2019
CerB79_reverse_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerB79_reverse_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18598712
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG7050.025.7191581
CGGGCAT51950.025.5058961
AATCCGC56150.021.232155
TCCGCTC56750.019.9022167
CCGCTCT64350.016.7932768
CGCTCTC66600.016.3306189
CAATCCG83000.015.3716544
ATCCGCT87900.015.0701286
CGGGGGG17250.014.5541191
CGGGGAT49650.013.76511
CGCGTAT12700.013.7280481
CGCGGAT19700.013.4520931
AGATCGG109300.013.33275140-144
CGCGGCT15650.012.9227871
CGGGAAT87550.012.1076541
CGCCCTT49150.011.9186831
CCGGGAT57150.011.7146021
CGGGGAC31150.011.1939791
CGGGCCC10106.381015E-911.0476811
CGCGGTT18000.010.8482091