FastQCFastQC Report
Wed 13 Feb 2019
CerC25_reverse_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerC25_reverse_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19935070
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGAAC102050.023.8790631
CGCCTCT50250.022.6493851
CGCGGGG5150.021.69291
CGAACAT103700.021.0698013
CGGGGGG13750.019.8046321
CGCGTAT8450.019.0053561
CGCGCAT10800.018.7490441
TCGAACA118400.018.5764922
CGCGGTT17000.018.482831
CGCGCCC6800.018.482831
CGCGCAG7102.3646862E-1115.7349911
CGGGGAT40200.015.6322451
CGGGCTT34000.015.4023581
CGCGCCT9650.015.1948661
CCCATAC133900.015.0665298
CGCCCAT37700.014.816771
GGCGCCC26500.014.4917782
GATACGA115200.014.4218327
CGGGGGT13250.014.22829151
CCGGGTT35250.014.0638461