FastQCFastQC Report
Wed 13 Feb 2019
CerA58_forward_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerA58_forward_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22885141
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGCTA71100.017.1691729
CGCGGGG6101.0124495E-815.1257651
TCTCGCT102850.012.1450398
CGGGCAT63850.011.8939671
AGATCGG167800.011.630449140-144
CCCGCCT37500.011.3559591
TCGCTAG51800.011.2350419
CGCGAGT16500.011.1838991
GCCCGAT40750.010.9727821
CGCGTCC13001.8189894E-1110.919191
GGAAAAT548050.010.8394971
TTCTCGC123100.010.6087357
CGGGGAT59250.010.1820321
CGGGAAT127900.09.9886271
CGCGGTT26550.09.8910191
CCCGTAT40400.09.8380831
CGCGTTT21150.09.7317621
CCCGTCT47450.09.7225681
CGCCCTT57800.09.70071
CGGGCCA25050.09.6332991