Basic Statistics
Measure | Value |
---|---|
Filename | CerC17_reverse_paired.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 20411892 |
Sequences flagged as poor quality | 0 |
Sequence length | 50-150 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGGGG | 540 | 0.0 | 22.000631 | 1 |
CGGGGAT | 4500 | 0.0 | 17.704039 | 1 |
CTCGAAC | 10975 | 0.0 | 17.701914 | 1 |
CCCGGTT | 9020 | 0.0 | 16.42515 | 1 |
CGCGGTT | 2160 | 0.0 | 15.853396 | 1 |
CGCCTCT | 5955 | 0.0 | 14.434552 | 1 |
CGAACAT | 10800 | 0.0 | 13.714815 | 3 |
AGATCGG | 10525 | 0.0 | 12.8597765 | 140-144 |
CGGGCAC | 2490 | 0.0 | 12.6297035 | 1 |
GGTTAAC | 13505 | 0.0 | 12.626275 | 1 |
CGCGTAT | 1055 | 5.456968E-12 | 12.585809 | 1 |
TCGAACA | 12035 | 0.0 | 12.426466 | 2 |
CTCGAAT | 18400 | 0.0 | 12.229762 | 1 |
CGGGGAG | 7850 | 0.0 | 12.107354 | 1 |
CGGGCGT | 880 | 9.587893E-9 | 11.9121065 | 1 |
CGCGCGT | 415 | 0.00371323 | 11.787724 | 1 |
CGCCCTT | 7175 | 0.0 | 11.687977 | 1 |
GATACGA | 10065 | 0.0 | 11.592677 | 7 |
CGGGCTT | 4105 | 0.0 | 11.576459 | 1 |
CGCTGAT | 4590 | 0.0 | 11.571266 | 1 |