FastQCFastQC Report
Wed 13 Feb 2019
CerB81_forward_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerB81_forward_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21618075
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG5750.019.750131
CGGGCAT55800.016.9174651
CGCGTAT13750.014.4535061
CCCGCAT28600.012.9049161
CGCCCTT54850.012.6814021
CGGGGAT52450.012.1790911
AATCCGC63050.012.1578435
CGGGCCC10154.1472958E-1011.8877791
TCCGCTC56700.011.7669157
CGGGAAT97150.011.7625351
CCCGTAT34450.010.9195441
AGATCGG115450.010.732051140-144
CGGGCAC30250.010.5585671
CGCCCAT56750.010.5058521
CGCCCGT11905.7480065E-910.1395771
CGGGCCT28650.09.9095341
CGCGTTT22950.09.896581
CGCACAT34700.09.8181491
CCGCTCT67600.09.449438
CGCCCCT31850.09.3596091