FastQCFastQC Report
Wed 13 Feb 2019
CerD33_reverse_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerD33_reverse_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22236452
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG5250.035.927251
CCCGCAT37900.017.8793621
CGGGCCC10250.014.9940271
CGCCTCT68050.013.9614411
CGGGGAT56150.013.68555451
CGCGTTT19500.013.6134591
CGGGCAT79900.013.4645991
CTCGAAC129500.013.216481
CGCGTAT10809.094947E-1212.28992751
CGGGGGG17100.012.2558831
CGCCCCT32000.012.22524451
AGATCGG101250.011.964291140-144
CGCGCAT11151.6370905E-1111.9041451
CCGCATG41950.011.8234942
AATCCGC59400.011.6403935
CGCATGC42400.011.5305783
CGCGTGT10458.749339E-1011.3645461
CGGGGCT35650.011.1695271
CGCCCTT72000.010.963911
CGCCCAT60750.010.9243811