FastQCFastQC Report
Wed 13 Feb 2019
CerD22_reverse_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerD22_reverse_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23684235
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG6050.026.5145021
CCCGCAT40500.014.1211431
AGATCGG117650.012.963203140-144
CGCGTTT17000.012.7181451
CGCCTCT64950.012.56370451
CGCGTGT11151.8189894E-1212.5102551
CGGGGAT55500.012.1896091
CGGGCCC11201.8189894E-1111.8316851
CCCGTCT46100.011.8006161
CGCGTAT12005.456968E-1211.6241111
CGGGCAT83900.011.471711
CGGGGGG17750.011.3949031
GCCGGGT24750.011.2718661
CGGGACT44550.011.2718661
CGCCCTT80200.011.2182821
CGGGGCG10106.373739E-911.048661
CGCGCAT10951.9481377E-910.827941
CGCCCCT33600.010.79381751
CGGGAAT108650.010.78426551
CGGGCGT11102.4392648E-910.6816161