FastQCFastQC Report
Wed 13 Feb 2019
CerA78_reverse_paired.fq

Summary

[OK]Basic Statistics

MeasureValue
FilenameCerA78_reverse_paired.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21951933
Sequences flagged as poor quality0
Sequence length50-150
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGGG6050.023.0710491
CGGGCCC11700.014.9123761
CTCGCTA56950.014.3337959
CCCGGCT30700.012.5030811
CGGGCAT58600.012.3859251
CGGGGGG19000.012.1214081
CGGGGAT57800.011.9536381
AGATCGG134800.011.234625140-144
CGCCCGT14300.011.2249541
CGCGTTT23900.011.0963071
CGCCCTT59050.010.9914691
CCGGGAT70550.010.7825691
CGCGTCT14853.6379788E-1210.3392481
GCCCGAT40750.010.2758171
GGAAAAT502950.010.2266971
TCGCTAG44350.010.22569
CGGGCAC32750.010.0156531
CGCACAT35200.09.91334151
CGCCCCT38700.09.7381291
CGGGTAT42500.09.6884831