Basic Statistics
Measure | Value |
---|---|
Filename | CerA78_reverse_paired.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21951933 |
Sequences flagged as poor quality | 0 |
Sequence length | 50-150 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGGGG | 605 | 0.0 | 23.071049 | 1 |
CGGGCCC | 1170 | 0.0 | 14.912376 | 1 |
CTCGCTA | 5695 | 0.0 | 14.333795 | 9 |
CCCGGCT | 3070 | 0.0 | 12.503081 | 1 |
CGGGCAT | 5860 | 0.0 | 12.385925 | 1 |
CGGGGGG | 1900 | 0.0 | 12.121408 | 1 |
CGGGGAT | 5780 | 0.0 | 11.953638 | 1 |
AGATCGG | 13480 | 0.0 | 11.234625 | 140-144 |
CGCCCGT | 1430 | 0.0 | 11.224954 | 1 |
CGCGTTT | 2390 | 0.0 | 11.096307 | 1 |
CGCCCTT | 5905 | 0.0 | 10.991469 | 1 |
CCGGGAT | 7055 | 0.0 | 10.782569 | 1 |
CGCGTCT | 1485 | 3.6379788E-12 | 10.339248 | 1 |
GCCCGAT | 4075 | 0.0 | 10.275817 | 1 |
GGAAAAT | 50295 | 0.0 | 10.226697 | 1 |
TCGCTAG | 4435 | 0.0 | 10.2256 | 9 |
CGGGCAC | 3275 | 0.0 | 10.015653 | 1 |
CGCACAT | 3520 | 0.0 | 9.9133415 | 1 |
CGCCCCT | 3870 | 0.0 | 9.738129 | 1 |
CGGGTAT | 4250 | 0.0 | 9.688483 | 1 |