Basic Statistics
Measure | Value |
---|---|
Filename | CerC38_reverse_paired.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 17567580 |
Sequences flagged as poor quality | 0 |
Sequence length | 50-150 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGAACTTGTAACTTACTTAAAGAGTGCGAACACCCAACATATTATGCAT | 18225 | 0.10374223427472651 | No Hit |
CAGAAACTGGGGAAACCAAAAGAAAAAGACGTGGATGCAGGAAGTTCCGG | 17765 | 0.10112377458932875 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGGGG | 335 | 0.0 | 33.338985 | 1 |
CTCGAAC | 9340 | 0.0 | 28.698658 | 1 |
CGCCTCT | 4025 | 0.0 | 27.054277 | 1 |
CGCGGTT | 1635 | 0.0 | 26.896765 | 1 |
CGAACAT | 9600 | 0.0 | 25.080278 | 3 |
TCGAACA | 10150 | 0.0 | 22.969824 | 2 |
CGGGGGG | 1060 | 0.0 | 21.73128 | 1 |
CGCGCAT | 900 | 0.0 | 21.716648 | 1 |
CGCGTAT | 790 | 0.0 | 19.438951 | 1 |
AGATCGG | 9265 | 0.0 | 18.89906 | 140-144 |
CGGGCGT | 705 | 0.0 | 18.812292 | 1 |
GCGGGGG | 1250 | 0.0 | 18.428125 | 1 |
CGCGCCT | 815 | 0.0 | 17.986177 | 1 |
CGGGCCC | 590 | 2.3646862E-11 | 17.746655 | 1 |
CGGGGAT | 2925 | 0.0 | 17.421047 | 1 |
GATACGA | 10580 | 0.0 | 17.01849 | 7 |
CGGGCTT | 2465 | 0.0 | 16.707533 | 1 |
CGGGGCG | 670 | 9.094947E-12 | 16.669493 | 1 |
CGCCCCT | 1645 | 0.0 | 16.54916 | 1 |
CCCGCAT | 1310 | 0.0 | 16.518387 | 1 |