Basic Statistics
Measure | Value |
---|---|
Filename | CerA21_forward_paired.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21167042 |
Sequences flagged as poor quality | 0 |
Sequence length | 50-150 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGGGG | 555 | 0.0 | 24.302916 | 1 |
CGCCCTT | 5040 | 0.0 | 14.64875 | 1 |
CGCGTAT | 1335 | 0.0 | 12.762265 | 1 |
CTCGCTA | 5790 | 0.0 | 12.383361 | 9 |
CGGGCAT | 6090 | 0.0 | 12.006536 | 1 |
CGCCCAT | 5995 | 0.0 | 11.367889 | 1 |
AGATCGG | 14885 | 0.0 | 11.096845 | 140-144 |
GGAAAAT | 51095 | 0.0 | 11.003847 | 1 |
GCCGGGT | 3360 | 0.0 | 10.986563 | 1 |
CGGGCAC | 3545 | 0.0 | 10.61347 | 1 |
CGGGCCT | 2775 | 0.0 | 9.976987 | 1 |
CGGGTAT | 4140 | 0.0 | 9.945472 | 1 |
TCGCTAG | 4205 | 0.0 | 9.791691 | 9 |
GCCCGAT | 4140 | 0.0 | 9.773998 | 1 |
CCCGGCT | 3030 | 0.0 | 9.605921 | 1 |
GCGGGCT | 1950 | 0.0 | 9.465345 | 1 |
CGCGCAT | 1880 | 0.0 | 9.440172 | 1 |
CGCGGTA | 1855 | 1.8189894E-12 | 9.184703 | 1 |
CGCGGGC | 775 | 3.9750384E-4 | 9.160012 | 1 |
CGCGGAT | 2025 | 0.0 | 9.114778 | 1 |