Basic Statistics
Measure | Value |
---|---|
Filename | CerD11_reverse_paired.fq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25168657 |
Sequences flagged as poor quality | 0 |
Sequence length | 50-150 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGGGG | 560 | 0.0 | 32.363106 | 1 |
CTCGAAC | 12505 | 0.0 | 17.447191 | 1 |
CGCCTCT | 6410 | 0.0 | 16.311657 | 1 |
CGCGTTT | 2090 | 0.0 | 16.008839 | 1 |
CGGGGAT | 5730 | 0.0 | 14.232988 | 1 |
CGCGCAT | 900 | 5.456968E-12 | 13.94103 | 1 |
CGAACAT | 13775 | 0.0 | 13.659376 | 3 |
TCGAACA | 14050 | 0.0 | 13.544133 | 2 |
CCCGCAT | 4635 | 0.0 | 13.534981 | 1 |
AGTCGCT | 9075 | 0.0 | 13.361742 | 6 |
CCCGTCT | 3785 | 0.0 | 12.89131 | 1 |
CGGGGGG | 1720 | 0.0 | 12.563138 | 1 |
CTCGAAT | 20345 | 0.0 | 12.162855 | 1 |
GGTTAAC | 13510 | 0.0 | 12.124879 | 1 |
AATCCGC | 5405 | 0.0 | 11.990741 | 5 |
CGGGAAT | 9360 | 0.0 | 11.8409395 | 1 |
AGATCGG | 10230 | 0.0 | 11.808895 | 140-144 |
CGCCCCA | 3010 | 0.0 | 11.578929 | 1 |
CGCGTAT | 1230 | 9.094947E-12 | 11.334171 | 1 |
GTCGCTT | 11070 | 0.0 | 11.331424 | 7 |