Biology

12 pages, 1167 KiB

Open AccessArticle

Proteomic Characterization of Drosophila melanogaster Proboscis

by Enisa Aruçi, Jean-Michel Saliou, Jean-François Ferveur and Loïc Briand

Biology 2022, 11(11), 1687; https://doi.org/10.3390/biology11111687 - 21 Nov 2022

Cited by 3 | Viewed by 1533

Drosophila melanogaster flies use their proboscis to taste and distinguish edible compounds from toxic compounds. With their proboscis, flies can detect sex pheromones at a close distance or by contact. Most of the known proteins associated with probosci’s detection belong to gustatory receptor [...] Read more.

Drosophila melanogaster flies use their proboscis to taste and distinguish edible compounds from toxic compounds. With their proboscis, flies can detect sex pheromones at a close distance or by contact. Most of the known proteins associated with probosci’s detection belong to gustatory receptor families. To extend our knowledge of the proboscis-taste proteins involved in chemo-detection, we used a proteomic approach to identify soluble proteins from Drosophila females and males. This investigation, performed with hundreds of dissected proboscises, was initiated by the chromatographic separation of tryptic peptides, followed by tandem mass spectrometry, allowing for femtomole detection sensitivity. We found 586 proteins, including enzymes, that are involved in intermediary metabolism and proteins dedicated to various functions, such as nucleic acid metabolism, ion transport, immunity, digestion, and organ development. Among 60 proteins potentially involved in chemosensory detection, we identified two odorant-binding proteins (OBPs), i.e., OBP56d (which showed much higher expression in females than in males) and OBP19d. Because OBP56d was also reported to be more highly expressed in the antennae of females, this protein can be involved in the detection of both volatile and contact male pheromone(s). Our proteomic study paves the way to better understand the complex role of Drosophila proboscis in the chemical detection of food and pheromonal compounds. Full article

(This article belongs to the Special Issue New Sights in Odorant-Binding Proteins)

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15 pages, 3236 KiB

Open AccessArticle

Effects of Short-Term High Temperature on Gas Exchange in Kiwifruits (Actinidia spp.)

by Dawei Li, Xiaodong Xie, Xiaoying Liu, Chang Cheng, Wen Guo, Caihong Zhong and Arif Atak

Biology 2022, 11(11), 1686; https://doi.org/10.3390/biology11111686 - 21 Nov 2022

Cited by 3 | Viewed by 1689

Abstract

Climate changes occurring today require detailed research of the effects of increasing temperatures on photosynthesis in different species and cultivars. Temperature variability is a crucial determinant of the yield and quality of plants, particularly when high-temperature episodes coincide with their growth and fruit [...] Read more.

Climate changes occurring today require detailed research of the effects of increasing temperatures on photosynthesis in different species and cultivars. Temperature variability is a crucial determinant of the yield and quality of plants, particularly when high-temperature episodes coincide with their growth and fruit development. The effect of high temperature (HT) on higher plants primarily concerns photosynthetic functions, but the sensitivity of photosynthesis to high temperature is not well-understood in kiwifruits. In this study, we designed a new environmental monitoring system to evaluate the effects of environmental factors on the photosynthetic physiology of different kiwifruit species and cultivars. A significant positive correlation was determined between the main photosynthetic indices of kiwifruits, such as transpiration rate and net photosynthetic rate. The net photosynthetic rate of commercial kiwifruit cultivars was strongly inhibited when the temperature exceeded 44.5 °C, and the leaves of kiwifruits were irreversibly damaged when the temperature increased to 52 °C. Kiwifruit cultivars with different ploidy levels (diploid, tetraploid and hexaploid) were found to be sensitive to high temperature, whereas tetraploids had higher HT resistance and hexaploids had the highest net photosynthetic rate. Further research showed that the HT tolerance of kiwifruits existed not only between species but also among cultivars. A. eriantha had the highest net photosynthetic rate at more than 44.7 °C, but those of A. deliciosa and A. arguta declined sharply as the temperature exceeded 43.5 °C. As a result, it was determined that high temperatures have important effects on the photosynthetic activities of kiwifruit plants with different ploidy levels, and that these effects can significantly change their development according to how they differ among different species/cultivars. Full article

(This article belongs to the Special Issue Eco-Physiological and Molecular Basis of Stress Tolerance in Plants)

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14 pages, 3730 KiB

Open AccessArticle

Exploring Active Peptides with Antimicrobial Activity In Planta against Xylella fastidiosa

by Kaoutar El Handi, Miloud Sabri, Franco Valentini, Angelo De Stradis, El Hassan Achbani, Majida Hafidi, Maroun El Moujabber and Toufic Elbeaino

Biology 2022, 11(11), 1685; https://doi.org/10.3390/biology11111685 - 21 Nov 2022

Viewed by 1680

Abstract

Xylella fastidiosa (Xf) is a xylem-limited quarantine plant bacterium and one of the most harmful agricultural pathogens across the world. Despite significant research efforts, neither a direct treatment nor an efficient strategy has yet been developed for combatting Xylella-associated diseases. Antimicrobial peptides (AMPs) [...] Read more.

Xylella fastidiosa (Xf) is a xylem-limited quarantine plant bacterium and one of the most harmful agricultural pathogens across the world. Despite significant research efforts, neither a direct treatment nor an efficient strategy has yet been developed for combatting Xylella-associated diseases. Antimicrobial peptides (AMPs) have been gaining interest as a promising sustainable tool to control pathogens due to their unique mechanism of action, broad spectrum of activity, and low environmental impact. In this study, we disclose the bioactivity of nine AMPs reported in the literature to be efficient against human and plant pathogen bacteria, i.e., Escherichia coli, Staphylococcus aureus, and Pseudomonas aeruginosa, against Xf, through in vitro and in vivo experiments. Based on viable-quantitative PCR (v-qPCR), fluorescence microscopy (FM), optical density (OD), and transmission electron microscopy (TEM) assays, peptides Ascaphin-8 (GF19), DASamP1 (FF13), and DASamP2 (IL14) demonstrated the highest bactericidal and antibiofilm activities and were more efficient than the peptide PB178 (KL29), reported as one of the most potent AMPs against Xf at present. Furthermore, these AMPs showed low to no toxicity when tested on eukaryotic cells. In in planta tests, no Xf disease symptoms were noticed in Nicotiana tabacum plants treated with the AMPs 40 days post inoculation. This study highlighted the high antagonistic activity of newly tested AMP candidates against Xf, which could lead to the development of promising eco-friendly management of Xf-related diseases. Full article

(This article belongs to the Section Microbiology)

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10 pages, 16945 KiB

Open AccessReview

Are Panoramic Images a Good Tool to Detect Calcified Carotid Atheroma? A Systematic Review

by María Prados-Privado, Javier García Villalón, Antonio Blázquez Torres, Carlos Hugo Martínez-Martínez, Juan Carlos Prados-Frutos and Carlos Ivorra

Biology 2022, 11(11), 1684; https://doi.org/10.3390/biology11111684 - 21 Nov 2022

Viewed by 1313

Abstract

To investigate the reliability of panoramic dental images to detect calcified carotid atheroma, electronic databases (PubMed, IEEE/Xplore and Embase) were searched. Outcomes included cerebrovascular disease events, cardiovascular disease events, patient previous diseases, and combined endpoints. Risk of bias was evaluated using the Newcastle-Ottawa [...] Read more.

To investigate the reliability of panoramic dental images to detect calcified carotid atheroma, electronic databases (PubMed, IEEE/Xplore and Embase) were searched. Outcomes included cerebrovascular disease events, cardiovascular disease events, patient previous diseases, and combined endpoints. Risk of bias was evaluated using the Newcastle-Ottawa Scale. Hence, 15 studies were selected from 507 potential manuscripts. Five studies had a low risk of bias, while the remaining nine studies were found to have a moderate risk. Heterogeneous results were obtained but showed that patients with risk factors, such as obesity, diabetes mellitus, hypertension, and smoking, and with calcified carotid atheroma on panoramic images, have a higher prevalence than healthy patients. The evidence in the literature was found to be equivocal. However, the findings of this systematic review exhibit that panoramic radiographs can be used for dental diagnosis and treatment planning, as well as to detect calcified carotid artery atheroma. Full article

(This article belongs to the Special Issue Cardiovascular Disease Risk Factors and Atherosclerosis Biomarkers)

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17 pages, 1193 KiB

Open AccessReview

The Gut Microbiome and Female Health

by Ruqaiyyah Siddiqui, Zinb Makhlouf, Ahmad M. Alharbi, Hasan Alfahemi and Naveed Ahmed Khan

Biology 2022, 11(11), 1683; https://doi.org/10.3390/biology11111683 - 21 Nov 2022

Cited by 18 | Viewed by 9321

Abstract

The possession of two X chromosomes may come with the risk of various illnesses, females are more likely to be affected by osteoarthritis, heart disease, and anxiety. Given the reported correlations between gut microbiome dysbiosis and various illnesses, the female gut microbiome is [...] Read more.

The possession of two X chromosomes may come with the risk of various illnesses, females are more likely to be affected by osteoarthritis, heart disease, and anxiety. Given the reported correlations between gut microbiome dysbiosis and various illnesses, the female gut microbiome is worthy of exploration. Herein, we discuss the composition of the female gut microbiota and its dysbiosis in pathologies affecting the female population. Using PubMed, we performed a literature search, using key terms, namely: “gut microbiome”, “estrogen”, “menopause”, “polycystic ovarian syndrome”, “pregnancy”, and “menstruation”. In polycystic ovarian syndrome (PCOS), the abundance of Bacteroides vulgatus, Firmicutes, Streptococcus, and the ratio of Escherichia/Shigella was found to be increased while that of Tenericutes ML615J-28, Tenericutes 124-7, Akkermansia, Ruminococcaceae, and Bacteroidetes S24-7 was reduced. In breast cancer, the abundance of Clostridiales was enhanced, while in cervical cancer, Prevotella, Porphyromonas, and Dialister were enhanced but Bacteroides, Alistipes, and members of Lachnospiracea, were decreased. In ovarian cancer, Prevotella abundance was increased. Interestingly, the administration of Lactobacillus acidophilus, Bifidobacterium bifidum, Lactobacillus reuteri, and Lactobacillus fermentum ameliorated PCOS symptoms while that of a mix of Bifidobacterium lactis W51, Bifidobacterium bifidum W23, Lactobacillus brevis W63, Bifidobacterium lactis W52, Lactobacillus salivarius W24, Lactobacillus acidophilus W37, Lactococcus lactis W19, Lactobacillus casei W56, and Lactococcus lactis W58 alleviated vascular malfunction and arterial stiffness in obese postmenopausal women, and finally, while further research is needed, Prevotella maybe protective against postmenopausal bone mass loss. As several studies report the therapeutic potential of probiotics and since the gut microbiota of certain female pathological states has been relatively characterized, we speculate that the administration of certain bacterial species as probiotics is warranted, as novel independent or adjunct therapies for various female pathologies. Full article

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16 pages, 1652 KiB

Open AccessArticle

High-Frequency Local Field Potential Oscillations May Modulate Aggressive Behaviors in Mice

by Jing Yang, Yansu Liu, Yanzhu Fan, Di Shen, Jiangyan Shen and Guangzhan Fang

Biology 2022, 11(11), 1682; https://doi.org/10.3390/biology11111682 - 21 Nov 2022

Cited by 4 | Viewed by 1369

Abstract

Aggressive behavior is one of congenital social behaviors in many species, which could be promoted by social neglect or isolation in the early stages of life. Many brain regions including the medial prefrontal cortex (mPFC), medial amygdala (MeA) and ventromedial hypothalamus (VMH) are [...] Read more.

Aggressive behavior is one of congenital social behaviors in many species, which could be promoted by social neglect or isolation in the early stages of life. Many brain regions including the medial prefrontal cortex (mPFC), medial amygdala (MeA) and ventromedial hypothalamus (VMH) are demonstrated to relate to aggressive behavior; however, the dynamic patterns of neural activities during the occurrence of this behavior remain unclear. In this study, 21-day-old male CD-1 mice were reared in social isolation conditions and cohousing conditions for two weeks. Aggressive behaviors of each subject were estimated by the resident–intruder test. Simultaneously, the local field potentials of mPFC, MeA and VMH were recorded for exploring differences in the relative power spectra of different oscillations when aggressive behaviors occurred. The results showed that the following: (1) Compared with the cohousing mice, the socially isolated mice exhibited more aggression. (2) Regardless of “time condition” (pre-, during- and post- attack), the relative power spectra of beta band in the cohousing mice were significantly greater than those in the socially isolated mice, and inversely, the relative power spectra of gamma band in the cohousing mice were significantly smaller than those in the socially isolated mice. (3) The bilateral mPFC exhibited significantly smaller beta power spectra but greater gamma power spectra compared with other brain areas regardless of rearing patterns. (4) For the right VMH of the socially isolated mice, the relative power spectra of the gamma band during attacks were significantly greater than those before attack. These results suggest that aggressive behaviors in mice could be shaped by rearing patterns and that high-frequency oscillations (beta and gamma bands) may engage in mediating aggressive behaviors in mice. Full article

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15 pages, 1709 KiB

Open AccessArticle

Estuarine Aquacultures at the Crossroads of Animal Production and Antibacterial Resistance: A Metagenomic Approach to the Resistome

by Daniel G. Silva, Célia P. F. Domingues, João F. Figueiredo, Francisco Dionisio, Ana Botelho and Teresa Nogueira

Biology 2022, 11(11), 1681; https://doi.org/10.3390/biology11111681 - 21 Nov 2022

Cited by 4 | Viewed by 1794

Abstract

It is recognized that the spread of antibiotic resistance (AR) genes among aquatic environments, including aquaculture and the human environment, can have detrimental effects on human and animal health and the ecosystem. Thus, when transmitted to the human microbiome or pathogens, resistance genes [...] Read more.

It is recognized that the spread of antibiotic resistance (AR) genes among aquatic environments, including aquaculture and the human environment, can have detrimental effects on human and animal health and the ecosystem. Thus, when transmitted to the human microbiome or pathogens, resistance genes risk human health by compromising the eventual treatment of infections with antibiotic therapy. This study aimed to define the resistance profile of aquaculture farms and their potential risk for spreading. Twenty-four sediments from oyster and gilthead sea bream aquaculture farms located in three Portuguese river estuaries (17 sediments from Sado, 4 from Aveiro, and 3 from Lima) were studied by comparative metagenomic analysis. The computation of the diversity of genes conferring resistance per antibiotic class revealed a significant increase in aminoglycosides, beta-lactams, disinfectants, quinolones, and tetracyclines counts. In all geographic locations under study, the most diverse AR genes confer resistance to the macrolides, tetracyclines and oxazolidinones classes, all of which are medically important for human and animal therapies, as well as resistance to disinfectants. The diversity of mobile genetic elements correlated with the number of AR genes such as tetracyclines, suggesting that AR could be easily mobilized among bacterial genomes and microbiomes. Full article

(This article belongs to the Special Issue Omics Technologies Applied to Aquaculture Research)

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2 pages, 193 KiB

Open AccessEditorial

Proteases—From Basic Structure to Function to Drug Design as Targeted Therapy

by Hang Fai Kwok, Brian Walker and Chris Shaw

Biology 2022, 11(11), 1680; https://doi.org/10.3390/biology11111680 - 21 Nov 2022

Cited by 1 | Viewed by 1026

Abstract

In the last two decades, proteases have become a primary and vital target in drug discovery [...] Full article

(This article belongs to the Special Issue Proteases—From Basic Structure to Function to Drug Design as Targeted Therapy)

14 pages, 2615 KiB

Open AccessArticle

UPLC-QTOF/MS Metabolomics and Biochemical Assays Reveal Changes in Hepatic Nutrition and Energy Metabolism during Sexual Maturation in Female Rainbow Trout (Oncorhynchus mykiss)

by Lu Ding, Yingjie Liu, Meng Kang, Xiaofeng Wei, Chuanye Geng, Wenzhi Liu, Lin Han, Fangying Yuan, Peng Wang, Bingqian Wang and Yanchun Sun

Biology 2022, 11(11), 1679; https://doi.org/10.3390/biology11111679 - 18 Nov 2022

Cited by 2 | Viewed by 1465

Abstract

Mobilization and repartition of nutrients and energy are prerequisites for the normal sexual maturity of broodstock. However, there are few studies on the mechanisms of hepatic nutrients and energy metabolism during sexual maturation in female rainbow trout (Oncorhynchus mykiss). This study [...] Read more.

Mobilization and repartition of nutrients and energy are prerequisites for the normal sexual maturity of broodstock. However, there are few studies on the mechanisms of hepatic nutrients and energy metabolism during sexual maturation in female rainbow trout (Oncorhynchus mykiss). This study investigated hepatic metabolite changes and explored the potential nutritional regulation mechanism between mature and immature female rainbow trout by combining UPLC-QTOF/MS metabolomics and biochemical assays. It was observed that hepatic biochemical assays differed considerably between the two groups, such as glucose, triglycerides, hexokinase, lipase, and aspartate aminotransferase. Liver metabolomics showed that various differential metabolites involved in amino acid and lipid metabolism markedly increased, suggesting the enhancement of lipid metabolism and amino acid anabolism in the liver provides the necessary material basis for ovarian development. Meanwhile, glycogen catabolism and glycolysis hold the key to maintaining organismal energy homeostasis with normal sexual maturation of female rainbow trout. Overall, the results from this study suggested that the liver undergoes drastic reprogramming of the metabolic profile in response to mobilization and repartition of nutrients and energy during the sexual maturation of female rainbow trout. This study further deepened the understanding of the reproductive biology of rainbow trout, and provided the theoretical basis and practical ramifications for nutritional requirements of breeding high-quality broodstock in the artificial propagation of rainbow trout. Full article

(This article belongs to the Section Biochemistry and Molecular Biology)

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27 pages, 3614 KiB

Open AccessReview

Aging and Mesenchymal Stem Cells: Basic Concepts, Challenges and Strategies

by Maria Fraile, Noemi Eiro, Luis A. Costa, Arancha Martín and Francisco J. Vizoso

Biology 2022, 11(11), 1678; https://doi.org/10.3390/biology11111678 - 18 Nov 2022

Cited by 16 | Viewed by 4536

Abstract

Aging and frailty are complex processes implicating multifactorial mechanisms, such as replicative senescence, oxidative stress, mitochondrial dysfunction, or autophagy disorder. All of these mechanisms drive dramatic changes in the tissue environment, such as senescence-associated secretory phenotype factors and inflamm-aging. Thus, there is a [...] Read more.

Aging and frailty are complex processes implicating multifactorial mechanisms, such as replicative senescence, oxidative stress, mitochondrial dysfunction, or autophagy disorder. All of these mechanisms drive dramatic changes in the tissue environment, such as senescence-associated secretory phenotype factors and inflamm-aging. Thus, there is a demand for new therapeutic strategies against the devastating effects of the aging and associated diseases. Mesenchymal stem cells (MSC) participate in a “galaxy” of tissue signals (proliferative, anti-inflammatory, and antioxidative stress, and proangiogenic, antitumor, antifibrotic, and antimicrobial effects) contributing to tissue homeostasis. However, MSC are also not immune to aging. Three strategies based on MSC have been proposed: remove, rejuvenate, or replace the senescent MSC. These strategies include the use of senolytic drugs, antioxidant agents and genetic engineering, or transplantation of younger MSC. Nevertheless, these strategies may have the drawback of the adverse effects of prolonged use of the different drugs used or, where appropriate, those of cell therapy. In this review, we propose the new strategy of “Exogenous Restitution of Intercellular Signalling of Stem Cells” (ERISSC). This concept is based on the potential use of secretome from MSC, which are composed of molecules such as growth factors, cytokines, and extracellular vesicles and have the same biological effects as their parent cells. To face this cell-free regenerative therapy challenge, we have to clarify key strategy aspects, such as establishing tools that allow us a more precise diagnosis of aging frailty in order to identify the therapeutic requirements adapted to each case, identify the ideal type of MSC in the context of the functional heterogeneity of these cellular populations, to optimize the mass production and standardization of the primary materials (cells) and their secretome-derived products, to establish the appropriate methods to validate the anti-aging effects and to determine the most appropriate route of administration for each case. Full article

(This article belongs to the Special Issue Mesenchymal Stem Cells: What We Have Learned and How to Manage Them)

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13 pages, 2338 KiB

Open AccessArticle

Striated Muscle Evaluation Based on Velocity and Amortization Ratio of Mechanical Impulse Propagation in Simulated Microgravity Environment

by Alexandru Nistorescu, Stefan Sebastian Busnatu, Adrian Dinculescu, Gabriel Olteanu, Mihaela Marin, Cosmina Elena Jercalau, Cristian Vizitiu and Ioana Raluca Papacocea

Biology 2022, 11(11), 1677; https://doi.org/10.3390/biology11111677 - 18 Nov 2022

Viewed by 1484

Abstract

Long-duration space flight missions impose extreme physiological stress and/or changes, such as musculoskeletal function degradation, on the crew due to the microgravity exposure. A great deal of research studies have been conducted in order to understand these physiological stress influences and to provide [...] Read more.

Long-duration space flight missions impose extreme physiological stress and/or changes, such as musculoskeletal function degradation, on the crew due to the microgravity exposure. A great deal of research studies have been conducted in order to understand these physiological stress influences and to provide countermeasures to minimize the observed negative effects of weightlessness exposure on musculoskeletal function. Among others, studies and experiments have been conducted in DI analogue Earth-based facilities in order to reproduce the weightlessness negative effects on the human body. This paper presents a complex muscular analysis of mechanical wave propagation in striated muscle, using MusTone, a device developed in-house at the Institute of Space Science, Romania. The data were collected during a 21-day DI campaign in order to investigate muscle fibers’ behavior in longitudinal direction, after applying a mechanical impulse, taking into account two particular parameters, namely propagation velocity and amortization ratio. The parameters were determined based on the wave-propagation data collected from five points (one impact point, two distal direction points, and two proximal direction points) along the muscle fiber. By statistically analyzing propagation velocity and amortization ratio parameters, the study revealed that muscle deconditioning is time dependent, the amortization ratio is more significant in the distal direction, and the lower fibers are affected the most. Full article

(This article belongs to the Special Issue Effects of Environmental Factors on Human Health and Performance)

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14 pages, 3565 KiB

Open AccessReview

Antibiotics from Insect-Associated Actinobacteria

by Anna A. Baranova, Yuliya V. Zakalyukina, Anna A. Ovcharenko, Vladimir A. Korshun and Anton P. Tyurin

Biology 2022, 11(11), 1676; https://doi.org/10.3390/biology11111676 - 18 Nov 2022

Cited by 9 | Viewed by 3290

Abstract

Actinobacteria are involved into multilateral relationships between insects, their food sources, infectious agents, etc. Antibiotics and related natural products play an essential role in such systems. The literature from the January 2016–August 2022 period devoted to insect-associated actinomycetes with antagonistic and/or enzyme-inhibiting activity [...] Read more.

Actinobacteria are involved into multilateral relationships between insects, their food sources, infectious agents, etc. Antibiotics and related natural products play an essential role in such systems. The literature from the January 2016–August 2022 period devoted to insect-associated actinomycetes with antagonistic and/or enzyme-inhibiting activity was selected. Recent progress in multidisciplinary studies of insect–actinobacterial interactions mediated by antibiotics is summarized and discussed. Full article

(This article belongs to the Special Issue Secondary Metabolites from Microorganisms, or Microorganism-Host Interaction?)

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16 pages, 2411 KiB

Open AccessArticle

Temperature and Humidity Regulate Sporulation of Corynespora cassiicola That Is Associated with Pathogenicity in Cucumber (Cucumis sativus L.)

by Qian Zhao, Yanxia Shi, Yikai Wang, Xuewen Xie, Lei Li, Tengfei Fan, Liyun Guo, Ali Chai and Baoju Li

Biology 2022, 11(11), 1675; https://doi.org/10.3390/biology11111675 - 18 Nov 2022

Cited by 2 | Viewed by 2065

Abstract

Cucumber target leaf spot, caused by Corynespora cassiicola, is an emerging disease with a high incidence that causes severe damage to cucumbers on a global scale. Therefore, efforts need to be undertaken to limit the spread and infection of this pathogen, preferably [...] Read more.

Cucumber target leaf spot, caused by Corynespora cassiicola, is an emerging disease with a high incidence that causes severe damage to cucumbers on a global scale. Therefore, efforts need to be undertaken to limit the spread and infection of this pathogen, preferably by using environmentally friendly methods. In this study, the effects of temperature and moisture on the sporulation of C. cassiicola were investigated in vitro and in vivo. The novelty of our study refers to the observation of spore production and size as well as the revelation of a correlation between spore size and virulence. On potato dextrose agar (PDA) and cucumber−leaf extract agar (CEA), temperature played a critical role in spore production, which was strongly influenced by both temperature and moisture on detached leaves and cucumber seedlings. Maximum spore production was found at 30 °C on PDA and 25 °C on CEA, cucumber detached leaves and living plants. Lower spore productions were observed with a stepwise change of 5 °C. In addition, the largest spore production was found at 100% relative humidity (RH) in comparison to the other tested moisture. Moreover, moisture was found to be the most important factor affecting spore size, accounting for 83.09–84.86% of the total variance in length and 44.72–73.10% of the total variance in width. The longest−narrowest spores were formed at 100% RH, and the shortest−widest spores were formed at 75% RH. Furthermore, the result showed that larger spores of C. cassiicola were more virulent and small spores were avirulent. Our findings will contribute to the development of new strategies for the effective alleviation and control of cucumber target leaf spot. Full article

(This article belongs to the Section Microbiology)

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19 pages, 8245 KiB

Open AccessArticle

Dimorphilus gyrociliatus (Annelida: Dinophiliformia) Dwarf Male Nervous System Represents a Common Pattern for Lophotrochozoa

by Elizaveta Fofanova

Biology 2022, 11(11), 1674; https://doi.org/10.3390/biology11111674 - 17 Nov 2022

Viewed by 1812

Abstract

Dinophiliformia is a newly revealed clade within Annelida that is a sister group to Pleistoannelida. Dimorphilus gyrociliatus is a representative of this clade that has fascinated scientists with its high degree of sexual dimorphism. Both males and females are small, worm-like creatures that [...] Read more.

Dinophiliformia is a newly revealed clade within Annelida that is a sister group to Pleistoannelida. Dimorphilus gyrociliatus is a representative of this clade that has fascinated scientists with its high degree of sexual dimorphism. Both males and females are small, worm-like creatures that have specific ciliary structures: anterior ventral, posterior ventral, and dorsal ciliary fields in males, and prototroch, metatroch, and ventral ciliary fields in females. There are data on the morphology and development of the nervous system in Oweniidae, Sipunculida, Pleistoannelida, and even Dinophiliformia. However, data on the neuromorphology and development of D. gyrociliatus dwarf males are limited. Here, we present data on the distribution of cilia, sensory neurons, and the 5-HT-like immunoreactive system in 3D reconstructions and cross-sections. Immunochemical labeling with anti-acetylated tubulin and anti-5-HT antibodies and confocal microscopy were used to visualize the ciliary structures and neurons. The male has three ciliary fields: anterior ventral, posterior ventral, and dorsal. These include frontal ganglia, five commissures, two ventral and two dorsal bundles, and penial nerves. A total of fifty-seven neurons and only five 5-HT-like immunoreactive cells were described. Although the sensory neurons were not 5-HT-like immunoreactive, they had 5-HT innervation, which may indicate the role of 5-HT in perception. There may be homology between male and female ciliary structures. The dwarf male of D. gyrociliatus may have a reduced apical organ consisting of two sensory neurons and a 5-HT-like immunoreactive cell. Full article

(This article belongs to the Section Zoology)

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14 pages, 1127 KiB

Open AccessArticle

The Role of Serotonergic Gene Methylation in Regulating Anxiety-Related Personality Traits in Chimpanzees

by Nicky Staes, Elaine E. Guevara, William D. Hopkins, Steven J. Schapiro, Marcel Eens, Chet C. Sherwood and Brenda J. Bradley

Biology 2022, 11(11), 1673; https://doi.org/10.3390/biology11111673 - 17 Nov 2022

Viewed by 1585

Abstract

While low serotonergic activity is often associated with psychological disorders such as depression, anxiety, mood, and personality disorders, variations in serotonin also contribute to normal personality differences. In this study, we investigated the role of blood DNA methylation levels at individual CpG sites [...] Read more.

While low serotonergic activity is often associated with psychological disorders such as depression, anxiety, mood, and personality disorders, variations in serotonin also contribute to normal personality differences. In this study, we investigated the role of blood DNA methylation levels at individual CpG sites of two key serotonergic genes (serotonin receptor gene 1A, HTR1A; serotonin transporter gene, SLC6A4) in predicting the personalities of captive chimpanzees. We found associations between methylation at 9/48 CpG sites with four personality dimensions: Dominance, Reactivity/Dependability, Agreeableness, and Openness. Directionality of effects were CpG location-dependent and confirmed a role of serotonergic methylation in reducing anxiety (Dominance) and aggression-related personality (Reactivity/Undependability) while simultaneously promoting prosocial (Agreeableness) and exploratory personalities (Openness). Although early-life adversity has been shown to impact serotonergic methylation patterns in other species, here, atypical early social rearing experiences only had a modest impact on CpG methylation levels in this chimpanzee sample. The precise environmental factors impacting serotonergic methylation in chimpanzees remain to be identified. Nevertheless, our study suggests a role in shaping natural variation in animal personalities. The results of this study offer a basis for future hypothesis-driven testing in additional populations and species to better understand the impact of ecology and evolution on complex behavioral traits. Full article

(This article belongs to the Special Issue Neurogenetics of Behaviour)

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15 pages, 2066 KiB

Open AccessArticle

by Tianxing Pang, Jianping Peng, Ruiling Bian, Yu Liu, Dong Zhang, Ida Bagus Andika and Liying Sun

Biology 2022, 11(11), 1672; https://doi.org/10.3390/biology11111672 - 17 Nov 2022

Cited by 1 | Viewed by 1581

Abstract

RNA silencing is a host innate antiviral mechanism which acts via the synthesis of viral-derived small interfering RNAs (vsiRNAs). We have previously reported the infection of phytopathogenic fungi by plant viruses such as cucumber mosaic virus (CMV) and tobacco mosaic virus (TMV). Furthermore, [...] Read more.

RNA silencing is a host innate antiviral mechanism which acts via the synthesis of viral-derived small interfering RNAs (vsiRNAs). We have previously reported the infection of phytopathogenic fungi by plant viruses such as cucumber mosaic virus (CMV) and tobacco mosaic virus (TMV). Furthermore, fungal RNA silencing was shown to suppress plant virus accumulation, but the characteristics of plant vsiRNAs associated with the antiviral response in this nonconventional host remain unknown. Using high-throughput sequencing, we characterized vsiRNA profiles in two plant RNA virus–fungal host pathosystems: CMV infection in phytopathogenic fungus Rhizoctonia solani and TMV infection in phytopathogenic fungus Fusarium graminearum. The relative abundances of CMV and TMV siRNAs in the respective fungal hosts were much lower than those in the respective experimental plant hosts, Nicotiana benthamiana and Nicotiana tabacum. However, CMV and TMV siRNAs in fungi had similar characteristics to those in plants, particularly in their size distributions, proportion of plus and minus senses, and nucleotide preference for the 5′ termini of vsiRNAs. The abundance of TMV siRNAs largely decreased in F. graminearum mutants with a deletion in either dicer-like 1 (dcl1) or dcl2 genes which encode key proteins for the production of siRNAs and antiviral responses. However, deletion of both dcl1 and dcl2 restored TMV siRNA accumulation in F. graminearum, indicating the production of dcl-independent siRNAs with no antiviral function in the absence of the dcl1 and dcl2 genes. Our results suggest that fungal RNA silencing recognizes and processes the invading plant RNA virus genome in a similar way as in plants. Full article

(This article belongs to the Special Issue Recent Advances in Molecular Plant Pathology)

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14 pages, 645 KiB

Open AccessArticle

Association between Sperm Morphology and Altered Sperm microRNA Expression

by Maja Tomic, Luka Bolha, Joze Pizem, Helena Ban-Frangez, Eda Vrtacnik-Bokal and Martin Stimpfel

Biology 2022, 11(11), 1671; https://doi.org/10.3390/biology11111671 - 17 Nov 2022

Cited by 4 | Viewed by 1616

Abstract

Evaluation of male infertility has been based on semen analysis for years. As this method can be subjective at times, there is a scientific tendency to discover stable and quantifiable biomarkers. This study included 28 couples who underwent an in vitro fertilization/intracytoplasmic sperm [...] Read more.

Evaluation of male infertility has been based on semen analysis for years. As this method can be subjective at times, there is a scientific tendency to discover stable and quantifiable biomarkers. This study included 28 couples who underwent an in vitro fertilization/intracytoplasmic sperm injection (IVF/ICSI) cycle. The couples were assigned into two groups, according to sperm morphology. Couples where the males were normozoospermic were placed in the control group (15 participants), while couples where males had teratozoospermia were placed in the study group (13 participants). Thirteen candidate miRNAs were selected for qPCR analysis, based on our literature search. We determined significant under-expression of nine miRNAs (miR-10a-5p/-15b-5p/-26a-5p/-34b-3p/-122-5p/-125b-5p/-191-5p/-296-5p and let-7a-5p) in spermatozoa from patients with teratozoospermia compared to the controls, whereas expression levels of four miRNAs (miR-92a-3p/-93-3p/-99b-5p/-328-3p) did not significantly differ between the study and control groups. The expression levels of all 13 included miRNAs were significantly positively correlated with each other and significantly positively associated with spermatozoa morphology, excluding miR-99b-5p. There were no other significant associations between miRNA expression and sperm quality parameters. Only expression levels of miR-99b-5p were significantly positively correlated with good-quality day 3 embryo rate (ρ = 0.546; p = 0.003), while other variables of the IVF/ICSI cycle outcome showed no significant associations with miRNA expression profiles. This is one of the rare studies providing an insight directly into miRNA profiles in regard to sperm morphology. We identified nine miRNAs that could serve as biomarkers of spermatozoa quality in regard to teratozoospermia. Full article

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19 pages, 3493 KiB

Open AccessArticle

Isolation and Characterization of a Novel Vibrio natriegens—Infecting Phage and Its Potential Therapeutic Application in Abalone Aquaculture

by Xuejing Li, Yantao Liang, Zhenhua Wang, Yanyan Yao, Xiaoli Chen, Anran Shao, Longfei Lu and Hongyue Dang

Biology 2022, 11(11), 1670; https://doi.org/10.3390/biology11111670 - 17 Nov 2022

Cited by 4 | Viewed by 3051

Abstract

Phage-based pathogen control (i.e., phage therapy) has received increasing scientific attention to reduce and prevent the emergence, transmission, and detrimental effects of antibiotic resistance. In the current study, multidrug-resistant Vibrio natriegens strain AbY-1805 was isolated and tentatively identified as a pathogen causing the [...] Read more.

Phage-based pathogen control (i.e., phage therapy) has received increasing scientific attention to reduce and prevent the emergence, transmission, and detrimental effects of antibiotic resistance. In the current study, multidrug-resistant Vibrio natriegens strain AbY-1805 was isolated and tentatively identified as a pathogen causing the death of juvenile Pacific abalones (Haliotis discus hannai Ino). In order to apply phage therapy, instead of antibiotics, to treat and control V. natriegens infections in marine aquaculture environments, a lytic phage, vB_VnaS-L3, was isolated. It could effectively infect V. natriegens AbY-1805 with a short latent period (40 min) and high burst size (~890 PFU/cell). Treatment with vB_VnaS-L3 significantly reduced the mortality of juvenile abalones and maintained abalone feeding capacity over a 40-day V. natriegens challenge experiment. Comparative genomic and phylogenetic analyses suggested that vB_VnaS-L3 was a novel marine Siphoviridae-family phage. Furthermore, vB_VnaS-L3 had a narrow host range, possibly specific to the pathogenic V. natriegens strains. It also exhibited viability at a wide range of pH, temperature, and salinity. The short latent period, large burst size, high host specificity, and broad environmental adaptation suggest that phage vB_VnaS-L3 could potentially be developed as an alternative antimicrobial for the control and prevention of marine animal infections caused by pathogenic V. natriegens. Full article

(This article belongs to the Topic Marine Microbiology: Resources, Ecology, and Biogeochemistry)

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15 pages, 1467 KiB

Open AccessArticle

Genetic Modulation of the GLUT1 Transporter Expression—Potential Relevance in Complex Diseases

by Anna Kulin, Nóra Kucsma, Balázs Bohár, Botond Literáti-Nagy, László Korányi, Judit Cserepes, Anikó Somogyi, Balázs Sarkadi, Edit Szabó and György Várady

Biology 2022, 11(11), 1669; https://doi.org/10.3390/biology11111669 - 16 Nov 2022

Cited by 1 | Viewed by 1989

Abstract

The human GLUT1 (SLC2A1) membrane protein is the key glucose transporter in numerous cell types, including red cells, kidney, and blood-brain barrier cells. The expression level of this protein has a role in several diseases, including cancer and Alzheimer’s disease. In this work, [...] Read more.

The human GLUT1 (SLC2A1) membrane protein is the key glucose transporter in numerous cell types, including red cells, kidney, and blood-brain barrier cells. The expression level of this protein has a role in several diseases, including cancer and Alzheimer’s disease. In this work, to investigate a potential genetic modulation of the GLUT1 expression level, the protein level was measured in red cell membranes by flow cytometry, and the genetic background was analyzed by qPCR and luciferase assays. We found significant associations between red cell GLUT1 levels and four single nucleotide polymorphisms (SNP) in the coding SLC2A1 gene, that in individuals with the minor alleles of rs841848, rs1385129, and rs11537641 had increased, while those having the variant rs841847 had decreased erythrocyte GLUT1 levels. In the luciferase reporter studies performed in HEK-293T and HepG2 cells, a similar SNP-dependent modulation was observed, and lower glucose, serum, and hypoxic condition had variable, cell- and SNP-specific effects on luciferase expression. These results should contribute to a more detailed understanding of the genetic background of membrane GLUT1 expression and its potential role in associated diseases. Full article

(This article belongs to the Section Genetics and Genomics)

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14 pages, 2847 KiB

Open AccessArticle

Stk10 Deficiency in Mice Promotes Tumor Growth by Dysregulating the Tumor Microenvironment

by Jin-Xia Ma, Dan-Dan Xu, Shun-Yuan Lu, Qian-Lan Wang, Lu Zhang, Rui Guo, Ling-Yun Tang, Yan Shen, Chun-Ling Shen, Jin-Jin Wang, Li-Ming Lu, Zhu-Gang Wang and Hong-Xin Zhang

Biology 2022, 11(11), 1668; https://doi.org/10.3390/biology11111668 - 15 Nov 2022

Viewed by 1961

Abstract

Serine-threonine kinase 10 (STK10) is a member of the STE20/p21-activated kinase (PAK) family and is predominantly expressed in immune organs. Our previous reports suggested that STK10 participates in the growth and metastasis of prostate cancer via in vitro and in vivo data. However, [...] Read more.

Serine-threonine kinase 10 (STK10) is a member of the STE20/p21-activated kinase (PAK) family and is predominantly expressed in immune organs. Our previous reports suggested that STK10 participates in the growth and metastasis of prostate cancer via in vitro and in vivo data. However, the correlation between STK10 and the tumor microenvironment (TME) remains unclear. In this study, we assessed the relationship between STK10 and the immune cells in the tumor microenvironment of prostate cancer through bioinformatic analysis, and investigated the role of Stk10 in tumor growth using an Stk10 knockout mouse model. The results showed that STK10 is significantly associated with the tumor-infiltrating immune cells including lymphocytes, neutrophils, macrophages and dendritic cells. The target deletion of host Stk10 results in increased tumor growth, due to decreased activated/effector cytotoxic T lymphocytes (CTLs) and increased vessel density in the TME. In conclusion, we demonstrate that host Stk10 is involved in the host anti-tumor response by modulating the activated tumor-infiltrated CTLs and angiogenesis. Full article

(This article belongs to the Special Issue Anti-Cancer Immune Boosters, Immunotherapeutic Combinations and Novel Immunomodulatory Pathways)

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10 pages, 1298 KiB

Open AccessArticle

The Impact of Obesity on C1q/TNF-Related Protein-9 Expression and Endothelial Function following Acute High-Intensity Interval Exercise vs. Continuous Moderate-Intensity Exercise

by Brandon G. Fico, Ryan S. Garten, Michael C. Zourdos, Michael Whitehurst, Peter J. Ferrandi, Katelyn M. Dodge, Gabriel S. Pena, Alexandra A. Rodriguez and Chun-Jung Huang

Biology 2022, 11(11), 1667; https://doi.org/10.3390/biology11111667 - 15 Nov 2022

Cited by 2 | Viewed by 1355

Abstract

C1q-TNF-related protein-9 (CTRP9) increases endothelial nitric oxide synthase and reduces vasoconstrictors. There is limited information regarding exercise-mediated CTRP9 in obesity. The purpose of this study was to compare high-intensity interval exercise (HIIE) and continuous moderate-intensity exercise (CME) on the CTRP9 response and an [...] Read more.

C1q-TNF-related protein-9 (CTRP9) increases endothelial nitric oxide synthase and reduces vasoconstrictors. There is limited information regarding exercise-mediated CTRP9 in obesity. The purpose of this study was to compare high-intensity interval exercise (HIIE) and continuous moderate-intensity exercise (CME) on the CTRP9 response and an indicator of endothelial function (FMD) in obese participants. Sixteen young male participants (9 obese and 7 normal-weight) participated in a counterbalanced and caloric equated experiment: HIIE (30 min, 4 intervals of 4 min at 80–90% of VO₂ max with 3 min rest between intervals) and CME (38 min at 50–60% VO₂ max). Serum CTRP9 and FMD were measured prior to, immediately following exercise, and 1 h and 2 h into recovery. CTRP9 was significantly increased immediately following acute HIIE and CME in both groups (p = 0.003). There was a greater CME-induced FMD response at 2 h into recovery in obese participants (p = 0.009). A positive correlation between CTRP9 and FMD percent change was observed in response to acute CME when combined with both obese and normal-weight participants (r = 0.589, p = 0.016). The novel results from this study provide a foundation for additional examination of the mechanisms of exercise-mediated CTRP9 on endothelial function in individuals with obesity. Full article

(This article belongs to the Special Issue Biological Responses to Exercise in Obese Subjects)

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17 pages, 2487 KiB

Open AccessArticle

The Effect of Date Palm Genotypes on Rhizobacterial Community Structures under Saline Environments

by Aya Al-Busaidi, Bernard R. Glick and Mahmoud W. Yaish

Biology 2022, 11(11), 1666; https://doi.org/10.3390/biology11111666 - 15 Nov 2022

Cited by 2 | Viewed by 1553

Abstract

Some genotypes of date palms (Phoenix dactylifera L.) are salt-tolerant; however, salinity significantly affects others. This study aimed to determine the root epiphytic bacterial contributions to the salt tolerance mechanism in the date palm and to verify if the salt-tolerant “Umsila” and [...] Read more.

Some genotypes of date palms (Phoenix dactylifera L.) are salt-tolerant; however, salinity significantly affects others. This study aimed to determine the root epiphytic bacterial contributions to the salt tolerance mechanism in the date palm and to verify if the salt-tolerant “Umsila” and the salt-susceptible “Zabad” cultivars have different bacterial communities. Therefore, the epiphytic bacterial community structures were investigated in both cultivars when grown under control and salinity conditions. The proximal soils of the roots were collected, the DNA was extracted, and a culture-independent approach using Illumina^® MiSeq™ sequence analysis was carried out to identify the changes in the bacterial community structures in the soil samples due to the changes in salinity and the genotypes of the plants based on 16S rRNA gene sequencing. While salt tolerance response differences were evident between the two cultivars, the 16S rRNA gene sequencing results revealed 771 operational taxonomic units (OTUs), including 62 that were differentially accumulated in response to salinity. The ordination analysis showed significant (p = 0.001) changes among the communities in response to salinity in both cultivars. However, the results showed that the two cultivars had distinct bacterial communities when grown under controlled conditions, whereas they had a more similar bacterial community structure when grown under salinity conditions. The plant genotype does not affect the epiphyte bacterial community structure under salinity, probably because salinity affects the plant-microbe interaction similarly in both cultivars. Also, the identified rhizospheric bacteria are not directly associated with the root’s physiological processes in response to salinity. Full article

(This article belongs to the Collection Plant Growth-Promoting Bacteria: Mechanisms and Applications)

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15 pages, 1552 KiB

Open AccessArticle

Nile Tilapia (Oreochromis niloticus Linnaeus, 1758) Invasion Caused Trophic Structure Disruptions of Fish Communities in the South China River—Pearl River

by Fangmin Shuai and Jie Li

Biology 2022, 11(11), 1665; https://doi.org/10.3390/biology11111665 - 15 Nov 2022

Cited by 4 | Viewed by 2678

Abstract

Widespread introductions of non-native species, including aquaculture and ornamental species, threaten biodiversity and ecosystem functioning by modifying the trophic structure of communities. In this study, we quantified the multiple facets of trophic disruption in freshwater communities invaded by Nile tilapia, by comparing uninvaded [...] Read more.

Widespread introductions of non-native species, including aquaculture and ornamental species, threaten biodiversity and ecosystem functioning by modifying the trophic structure of communities. In this study, we quantified the multiple facets of trophic disruption in freshwater communities invaded by Nile tilapia, by comparing uninvaded and invaded rivers downstream of the Pearl River, China. Nile tilapia invasion reduced the trophic status of native fish species by forcing native herbivores and planktivores to seek new food sources. The food chain was also shortened by decreasing the trophic levels of native invertivores, omnivores, and piscivores, while the total isotopic niche area (TA) of native invertivores, omnivores, piscivores, and planktivores species also decreased. Simultaneously, Nile tilapia invasion affected the isotopic diversity of the fish community. Decreasing isotopic richness (IRic), isotopic evenness (IEve), and increasing isotopic uniqueness (IUni) indicated that Nile tilapia had a high trophic niche overlap with native species and competed with native species for food resources, and even caused the compression of the trophic niche of native species. Understanding the process described in this study is essential to conserve the stability of freshwater ecosystems, and improve the control strategy of alien aquatic organisms in south China. Full article

(This article belongs to the Special Issue Aquatic Biodiversity and Conservation Biology)

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10 pages, 499 KiB

Open AccessArticle

The Pattern of Tooth Loss for Periodontally Favorable Teeth: A Retrospective Study

by Peter Yanni, Donald A. Curtis, Richard T. Kao and Guo-Hao Lin

Biology 2022, 11(11), 1664; https://doi.org/10.3390/biology11111664 - 15 Nov 2022

Cited by 1 | Viewed by 1423

Abstract

To retrospectively analyze local and systemic factors that resulted in the short-term tooth loss of teeth that were previously assigned a favorable prognosis in patients who were seen and treated over an observational five-year period. This retrospective study included the records of patients [...] Read more.

To retrospectively analyze local and systemic factors that resulted in the short-term tooth loss of teeth that were previously assigned a favorable prognosis in patients who were seen and treated over an observational five-year period. This retrospective study included the records of patients who had a minimum of two dental exams at least twelve months apart over a 5-year period. This study investigated extracted teeth with an initially favorable periodontal prognosis that were then divided into one of four categories based on the reason for extraction: caries, periodontal disease, endodontic reasons, or fracture. Patient- and tooth-related factors associated with the extracted teeth were recorded: crown-to-root ratio, initial pocket depth, initial periodontal diagnosis, maintenance interval, presence of existing restoration, furcation involvement, and systemic conditions. Data analysis was performed using a linear mixed model. A total of 50 patients with 111 teeth met the inclusion criteria for this study. A higher odds ratio (OR) for tooth loss due to caries, endodontic reasons, and fracture were found in teeth with a history of root canal treatment with an OR of 3.61, 3.86, and 2.52, respectively. For tooth loss due to periodontal disease, higher ORs were found in patients who were on anti-depressants (OR = 4.28) and patients who had an initial diagnosis of Stage III/IV periodontitis (OR = 2.66). In addition, teeth with initial probing depths ≥5 mm (OR = 4.32) and with furcation involvement (OR = 1.93) showed a higher OR for tooth loss due to periodontal disease. Within the limitations of this study, previously root-canal-treated teeth present a higher OR for early loss due to caries, recurrent endodontic lesions, or fracture. In addition, patients with anti-depressant medication use, sporadic maintenance, initial probing depths ≥5 mm, and furcation involvement represent a significantly higher OR of tooth loss due to periodontal disease even for initially favorable teeth. Full article

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21 pages, 1021 KiB

Open AccessReview

Re-Enlightenment of Fulminant Type 1 Diabetes under the COVID-19 Pandemic

by Hiroyuki Sano and Akihisa Imagawa

Biology 2022, 11(11), 1662; https://doi.org/10.3390/biology11111662 - 15 Nov 2022

Cited by 3 | Viewed by 2417

Abstract

Fulminant type 1 diabetes (FT1D) is a subtype of type 1 diabetes (T1D) that is characterized by the rapid progression to diabetic ketoacidosis against the background of rapid and almost complete pancreatic islet destruction. The HbA1c level at FT1D onset remains normal or [...] Read more.

Fulminant type 1 diabetes (FT1D) is a subtype of type 1 diabetes (T1D) that is characterized by the rapid progression to diabetic ketoacidosis against the background of rapid and almost complete pancreatic islet destruction. The HbA1c level at FT1D onset remains normal or slightly elevated despite marked hyperglycemia, reflecting the rapid clinical course of the disease, and is an important marker for diagnosis. FT1D often appears following flu-like symptoms, and there are many reports of its onset being linked to viral infections. In addition, disease-susceptibility genes have been identified in FT1D, suggesting the involvement of host factors in disease development. In most cases, islet-related autoantibodies are not detected, and histology of pancreatic tissue reveals macrophage and T cell infiltration of the islets in the early stages of FT1D, suggesting that islet destruction occurs via an immune response different from that occurring in autoimmune type 1 diabetes. From 2019, coronavirus disease 2019 (COVID-19) caused by the novel severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) spread worldwide and became a serious problem. Reports on the association between SARS-CoV-2 and T1D are mixed, with some suggesting an increase in T1D incidence due to the COVID-19 pandemic. When discussing the association between COVID-19 and T1D, it is also necessary to focus on FT1D. However, it is not easy to diagnose this subtype without understanding the concept. Therefore, authors hereby review the concept and the latest findings of FT1D, hoping that the association between COVID-19 and T1D will be adequately evaluated in the future. Full article

(This article belongs to the Special Issue Regulation of Viral Infection in Diabetes)

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16 pages, 1378 KiB

Open AccessArticle

Assessment of the Functional Form of the Relationship between Balance Control and Physical Activity Regarding Demographic, Anthropometrical, and Eye Impairment Explanatory Covariates in 9- to 11-Year-Old Children: Results of Polynomial and Cluster Analyses

by Jarosław Domaradzki, Monika Modrzejewska, Dawid Koźlenia and Teresa Zwierko

Biology 2022, 11(11), 1663; https://doi.org/10.3390/biology11111663 - 14 Nov 2022

Cited by 1 | Viewed by 1132

Abstract

Explaining the causal and functional relationship between balance control and physical activity (PA) when comparing demographic, anthropometric, and eyesight impairment is uncharted. This study aimed to assess the shape of the relationships between balance control and PA and to verify the usefulness of [...] Read more.

Explaining the causal and functional relationship between balance control and physical activity (PA) when comparing demographic, anthropometric, and eyesight impairment is uncharted. This study aimed to assess the shape of the relationships between balance control and PA and to verify the usefulness of explanatory variables (sex, chronological age, biological age, myopia, and BMI) in explaining the formation of functional forms between both abovementioned variables. The current contribution evaluated data from 9–11-year-old children (47 boys, 58 girls) and attempts to explain the shape of the relationship between the overall stability index and PA synthetic index, sorting children into clusters depending on their balance features and PA and comparing the separated groups in terms of explanatory variables. The analysis demonstrates four larger clusters that displayed distinct functional relationships. Only BMI and myopia turned out to be useful in explaining cluster memberships. Children in clusters with a linear-constant decline functional form were mostly non-myopic girls, thin, and less mature. Meanwhile, it becomes clear that children with an L-shape were myopic, early-maturated boys with a BMI in the middle of the range for normal weight. The pattern of an inverted U-shaped functional form was distinctive for myopes with rather high BMIs compared to their peers but normally matured. Full article

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25 pages, 7323 KiB

Open AccessArticle

The Mitogenome of Sedum plumbizincicola (Crassulaceae): Insights into RNA Editing, Lateral Gene Transfer, and Phylogenetic Implications

by Hengwu Ding, De Bi, Sijia Zhang, Shiyun Han, Yuanxin Ye, Ran Yi, Jianke Yang, Birong Liu, Longhua Wu, Renying Zhuo and Xianzhao Kan

Biology 2022, 11(11), 1661; https://doi.org/10.3390/biology11111661 - 13 Nov 2022

Cited by 2 | Viewed by 1973

Abstract

As the largest family within the order Saxifragales, Crassulaceae contains about 34 genera with 1400 species. Mitochondria play a critical role in cellular energy production. Since the first land plant mitogenome was reported in Arabidopsis, more than 400 mitogenomic sequences have been [...] Read more.

As the largest family within the order Saxifragales, Crassulaceae contains about 34 genera with 1400 species. Mitochondria play a critical role in cellular energy production. Since the first land plant mitogenome was reported in Arabidopsis, more than 400 mitogenomic sequences have been deposited in a public database. However, no entire mitogenome data have been available for species of Crassulaceae to date. To better understand the evolutionary history of the organelles of Crassulaceae, we sequenced and performed comprehensive analyses on the mitogenome of Sedum plumbizincicola. The master mitogenomic circle is 212,159 bp in length, including 31 protein-coding genes (PCGs), 14 tRNA genes, and 3 rRNA genes. We further identified totally 508 RNA editing sites in PCGs, and demonstrated that the second codon positions of mitochondrial genes are most prone to RNA editing events. Notably, by neutrality plot analyses, we observed that the mitochondrial RNA editing events have large effects on the driving forces of plant evolution. Additionally, 4 MTPTs and 686 NUMTs were detected in the mitochondrial and nuclear genomes of S. plumbizincicola, respectively. Additionally, we conducted further analyses on gene transfer, secondary structures of mitochondrial RNAs, and phylogenetic implications. Therefore, the findings presented here will be helpful for future investigations on plant mitogenomes. Full article

(This article belongs to the Section Plant Science)

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29 pages, 5070 KiB

Open AccessArticle

Taxonomic Novelties of Woody Litter Fungi (Didymosphaeriaceae, Pleosporales) from the Greater Mekong Subregion

by Guangcong Ren, Dhanushka N. Wanasinghe, Antonio Roberto Gomes de Farias, Kevin D. Hyde, Erandi Yasanthika, Jianchu Xu, Abhaya Balasuriya, Kandawatte Wedaralalage Thilini Chethana and Heng Gui

Biology 2022, 11(11), 1660; https://doi.org/10.3390/biology11111660 - 13 Nov 2022

Cited by 7 | Viewed by 1860

Abstract

The Greater Mekong Subregion (GMS) is known as a diverse geographic landscape and one of the richest biodiversity hotspots in the world with a high fungal diversity. Collections were carried out in terrestrial habitats to determine the diversity of woody litter fungi in [...] Read more.

The Greater Mekong Subregion (GMS) is known as a diverse geographic landscape and one of the richest biodiversity hotspots in the world with a high fungal diversity. Collections were carried out in terrestrial habitats to determine the diversity of woody litter fungi in the GMS, with an emphasis on northern Thailand and the Yunnan Province of China. Morphological characteristics and multigene phylogenetic analyses of combined SSU, LSU, ITS, and tef1-α supported the placement of the new isolates in the family Didymosphaeriaceae. The phylogenetic affinities of our isolates are illustrated through maximum likelihood and Bayesian inference analyses. Seven species of woody litter fungi were identified, comprising a new monotypic genus, Septofusispora; five novel species (Chromolaenicola sapindi, Dictyoarthrinium thailandicum, Karstenula lancangensis, Septofusispora thailandica, and Spegazzinia jinghaensis); and new host records of two species (Austropleospora archidendri, and Montagnula donacina). Furthermore, this study provides a synopsis of the Montagnula aff. donacina species based on their morphological characteristics, which can be useful in the species-level identifications in this genus. Full article

(This article belongs to the Special Issue Molecular Characterization of Fungi)

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17 pages, 3705 KiB

Open AccessArticle

Distributional Response of the Rare and Endangered Tree Species Abies chensiensis to Climate Change in East Asia

by Peng-Bin Dong, Li-Yang Wang, Ling-Juan Wang, Yun Jia, Zhong-Hu Li, Gang Bai, Rui-Ming Zhao, Wei Liang, Hong-Yan Wang, Feng-Xia Guo and Yuan Chen

Biology 2022, 11(11), 1659; https://doi.org/10.3390/biology11111659 - 13 Nov 2022

Cited by 5 | Viewed by 1792

Abstract

Globally, increasing temperatures due to climate change have severely affected natural ecosystems in several regions of the world; however, the impact on the alpine plant may be particularly profound, further raising the risk of extinction for rare and endangered alpine plants. To identify [...] Read more.

Globally, increasing temperatures due to climate change have severely affected natural ecosystems in several regions of the world; however, the impact on the alpine plant may be particularly profound, further raising the risk of extinction for rare and endangered alpine plants. To identify how alpine species have responded to past climate change and to predict the potential geographic distribution of species under future climate change, we investigated the distribution records of A. chensiensis, an endangered alpine plant in the Qinling Mountains listed in the Red List. In this study, the optimized MaxEnt model was used to analyse the key environmental variables related to the distribution of A. chensiensis based on 93 wild distribution records and six environmental variables. The potential distribution areas of A. chensiensis in the last interglacial (LIG), the last glacial maximum (LGM), the current period, and the 2050s and 2070s were simulated. Our results showed that temperature is critical to the distribution of A. chensiensis, with the mean temperature of the coldest quarter being the most important climatic factor affecting the distribution of this species. In addition, ecological niche modeling analysis showed that the A. chensiensis distribution area in the last interglacial experiencing population expansion and, during the last glacial maximum occurring, a population contraction. Under the emission scenarios in the 2050s and 2070s, the suitable distribution area would contract significantly, and the migration routes of the centroids tended to migrate toward the southern high-altitude mountains, suggesting a strong response from the A. chensiensis distribution to climate change. Collectively, the results of this study provide a comprehensive and multidimensional perspective on the geographic distribution pattern and history of population dynamics for the endemic, rare, and endangered species, A. chensiensis, and it underscores the significant impact of geological and climatic changes on the geographic pattern of alpine species populations. Full article

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18 pages, 3404 KiB

Open AccessArticle

Entomopathogenic Nematodes and Their Symbiotic Bacteria from the National Parks of Thailand and Larvicidal Property of Symbiotic Bacteria against Aedes aegypti and Culex quinquefasciatus

by Aunchalee Thanwisai, Paramaporn Muangpat, Wipanee Meesil, Pichamon Janthu, Abdulhakam Dumidae, Chanakan Subkrasae, Jiranun Ardpairin, Sarunporn Tandhavanant, Timothy P. Yoshino and Apichat Vitta

Biology 2022, 11(11), 1658; https://doi.org/10.3390/biology11111658 - 13 Nov 2022

Cited by 3 | Viewed by 1925

Abstract

Entomopathogenic nematodes (EPNs) are insect parasitic nematodes of the genera Het-erorhabditis and Steinernema. These nematodes are symbiotically associated with the bacteria, Photorhabdus and Xenorhabdus, respectively. National parks in Thailand are a potentially rich resource for recovering native EPNs and their symbiotic bacteria. [...] Read more.

Entomopathogenic nematodes (EPNs) are insect parasitic nematodes of the genera Het-erorhabditis and Steinernema. These nematodes are symbiotically associated with the bacteria, Photorhabdus and Xenorhabdus, respectively. National parks in Thailand are a potentially rich resource for recovering native EPNs and their symbiotic bacteria. The objectives of this study are to isolate and identify EPNs and their bacterial flora from soil samples in four national parks in Thailand and to evaluate their efficacy for controlling mosquito larvae. Using a baiting method with a Galleria mellonella moth larvae and a White trap technique, 80 out of 840 soil samples (9.5%) from 168 field sites were positive for EPNs. Sequencing of an internal transcribed spacer resulted in the molecular identification of Heterorhabditis nematode isolates as H. indica, H. baujardi and Heterorhabditis SGmg3, while using 28S rDNA sequencing, Steinernema nematode species were identified as S. guang-dongense, S. surkhetense, S. minutum, S. longicaudum and one closely related to S. yirgalemense. For the symbiotic bacterial isolates, based on recA sequencing, the Photorhabdus spp. were identified as P. luminescens subsp. akhurstii, P. luminescens subsp. hainanensis and P. luminescens subsp. australis. Xenorhabdus isolates were identified as X. stockiae, X. indica, X. griffiniae, X. japonica and X. hominickii. Results of bioassays demonstrate that Photorhabdus isolates were effective on both Aedes aegypti and Culex quinquefasciatus. Therefore, we conclude that soil from Thailand’s national parks contain a high diversity of entomopathogenic nematodes and their symbiotic bacteria. Photorhabdus bacteria are larvicidal against culicine mosquitoes and may serve as effective biocontrol agents. Full article

(This article belongs to the Section Zoology)

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